Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7S05	24784	2024-02-13	2021-08-30	3.1	3.37	3.11	3.4	0.004	0.68	0.0	0.05	16.05	0.00	2.212	8.45	0.00	5.8	94.2	0.0	0.10	0.68	0.81	2.22	3.4	0.004	0.61	0.0	0.05	15.82	0.00	2.295	7.77	2.18	6.1	93.9	0.0	1.20	0.48	0.68	0.85	2.45	7504	874	8	0	16	0	0	logfile
✔	7S0Q	24791	2024-02-16	2021-08-30	3.7	4.24	—	3.8	0.004	0.61	0.0	0.06	16.05	0.00	1.445	10.03	0.00	9.9	90.1	0.0	-4.98	0.82	0.71	0.74	3.8	0.003	0.59	0.0	0.04	13.16	0.00	1.932	12.41	0.82	10.3	89.7	0.0	-2.80	0.77	0.82	0.72	1.12	15357	958	8	0	16	0	7466	logfile
✔	7VAJ	31843	2024-02-21	2021-08-30	3.1	2.68	3.19	3.1	0.010	0.79	0.0	0.05	14.01	0.01	2.081	7.34	0.06	4.8	95.1	0.1	-2.47	0.63	0.84	2.99	3.0	0.003	0.57	0.0	0.04	16.42	0.00	2.157	6.33	2.63	2.8	97.2	0.0	0.31	1.03	0.68	0.87	2.38	29462	3788	12	0	0	0	0	logfile
✔	7VAi	31842	2024-02-21	2021-08-30	3.1	2.66	3.06	3.0	0.011	0.82	0.0	0.05	13.98	0.01	2.128	7.02	0.13	4.6	95.3	0.0	-2.40	0.66	0.85	3.49	2.9	0.008	0.75	0.0	0.05	16.05	0.01	2.101	7.61	2.85	4.3	95.7	0.0	-0.40	1.01	0.72	0.89	3.14	29462	3788	12	0	0	0	0	logfile
✔	7VAK	31845	2024-02-21	2021-08-30	4.7	3.87	4.25	4.0	0.003	0.55	0.0	0.04	13.32	0.00	2.115	9.01	0.00	2.9	97.1	0.0	0.43	0.71	0.75	—	3.9	0.002	0.62	0.0	0.04	14.02	0.00	2.111	9.53	0.00	3.2	96.8	0.0	0.28	1.21	0.72	0.77	—	29462	3788	12	0	0	0	0	logfile
✔	7VAY	31871	2024-02-21	2021-08-30	3.3	2.93	3.28	3.2	0.005	0.59	0.0	0.04	13.65	0.00	1.949	6.21	0.00	2.6	97.4	0.0	1.07	0.63	0.77	3.23	3.2	0.003	0.54	0.0	0.04	16.00	0.00	1.980	7.90	1.72	2.4	97.6	0.0	0.56	1.02	0.72	0.85	3.09	29553	3788	16	0	5	0	0	logfile
✔	7VB7	31874	2024-02-21	2021-08-30	2.4	2.41	—	2.4	0.007	0.77	1.0	0.05	16.79	0.01	1.988	6.35	1.28	3.0	96.9	0.1	0.48	0.76	0.90	5.52	2.4	0.004	0.59	0.0	0.04	16.83	0.00	2.093	4.34	1.58	3.3	96.7	0.0	0.61	0.22	0.77	0.91	5.45	29279	3543	45	0	19	736	0	logfile
✔	7VAN	31853	2024-02-21	2021-08-30	3.0	2.41	2.94	2.8	0.005	0.59	0.0	0.04	13.65	0.00	1.909	3.67	0.00	2.5	97.5	0.0	1.31	0.49	0.76	3.18	2.6	0.003	0.69	1.0	0.04	17.15	0.00	2.001	6.82	1.98	2.1	97.9	0.0	0.51	0.58	0.59	0.84	3.16	29558	3788	15	0	6	0	0	logfile
✔	7VAP	31857	2024-02-21	2021-08-30	3.0	2.45	2.98	2.9	0.004	0.54	0.0	0.04	13.61	0.00	1.645	3.89	0.00	2.0	98.0	0.0	1.43	0.54	0.79	3.19	2.9	0.003	0.58	0.0	0.04	16.87	0.00	1.920	5.64	2.21	2.2	97.8	0.0	0.59	0.57	0.63	0.85	2.90	29558	3788	15	0	6	0	0	logfile
✔	7VAL	31849	2024-02-21	2021-08-30	3.1	2.59	2.99	2.9	0.003	0.55	0.0	0.04	13.21	0.00	1.776	3.43	0.00	1.5	98.5	0.0	1.44	0.56	0.80	3.46	2.9	0.004	0.59	0.0	0.04	16.25	0.01	1.889	5.49	2.27	2.3	97.7	0.0	0.43	0.49	0.65	0.87	3.32	29558	3788	15	0	6	0	0	logfile
✔	7S0G	24790	2024-02-16	2021-08-30	3.86	3.93	—	3.9	0.003	0.44	0.0	0.04	12.41	0.00	1.898	3.75	0.00	3.3	96.7	0.0	-1.90	0.49	0.72	2.15	3.9	0.004	0.53	0.0	0.04	15.61	0.00	1.931	9.67	3.10	5.7	94.3	0.0	-0.07	1.31	0.49	0.73	2.01	13846	893	5	0	1	0	6854	logfile
✔	7VB9	31875	2024-02-23	2021-08-30	3.45	3.03	—	3.3	0.019	1.97	0.0	0.04	17.30	0.05	2.077	14.17	3.01	2.8	97.2	0.0	2.33	0.62	0.77	2.94	3.3	0.004	0.81	1.0	0.04	17.01	0.00	1.426	11.95	2.09	2.0	98.0	0.0	2.36	0.70	0.65	0.81	2.68	36474	3807	100	0	107	0	0	logfile
✔	7VAU	31864	2024-02-21	2021-08-30	3.3	2.83	3.35	3.2	0.007	0.69	0.0	0.05	13.70	0.00	1.966	5.17	0.00	2.6	97.4	0.0	0.84	0.60	0.81	2.86	3.1	0.005	0.63	0.0	0.05	16.42	0.01	1.948	6.89	2.66	3.3	96.7	0.0	0.10	1.09	0.64	0.85	2.52	29513	3787	14	0	4	0	0	logfile
✔	7S0D	24787	2024-02-22	2021-08-30	3.5	3.80	—	3.7	0.005	0.88	2.0	0.05	13.46	0.01	1.969	18.32	0.13	6.0	93.4	0.6	-0.74	0.66	0.78	1.75	3.7	0.004	0.67	0.0	0.04	15.54	0.00	2.080	14.60	3.25	5.8	94.1	0.2	-0.50	1.03	0.67	0.81	1.81	33623	4383	9	0	0	0	0	logfile
✔	7S0E	24788	2024-02-14	2021-08-30	4.9	4.98	—	4.8	0.004	0.87	0.0	0.05	13.44	0.01	1.886	21.60	1.22	8.1	91.3	0.7	-1.76	0.77	0.67	—	4.8	0.004	0.79	0.0	0.05	12.96	0.01	2.080	22.56	0.00	10.5	89.3	0.2	-1.99	1.17	0.78	0.73	—	8248	1076	3	0	0	0	0	logfile
✔	7VAV	31866	2024-02-21	2021-08-30	2.8	2.66	3.31	3.2	0.002	0.49	0.0	0.04	13.38	0.00	2.035	3.96	0.00	1.5	98.5	0.0	1.80	0.63	0.80	2.95	3.1	0.002	0.55	0.0	0.04	16.50	0.00	2.039	6.02	1.52	2.2	97.8	0.0	0.83	1.09	0.67	0.85	2.82	29520	3787	14	0	4	0	0	logfile
✔	7VAX	31869	2024-02-21	2021-08-30	2.9	2.65	2.96	2.8	0.003	0.51	0.0	0.04	13.52	0.00	2.017	4.97	0.03	2.0	98.0	0.0	1.44	0.60	0.81	3.35	2.7	0.002	0.55	0.0	0.04	16.59	0.00	2.008	7.78	1.65	2.3	97.7	0.0	0.70	0.50	0.67	0.86	3.14	29553	3788	15	0	5	0	0	logfile
✔	7VAW	31868	2024-02-21	2021-08-30	2.7	2.11	2.77	2.6	0.004	0.58	0.0	0.04	13.30	0.00	1.960	4.58	0.03	1.4	98.6	0.0	0.85	0.51	0.78	3.78	2.5	0.005	0.69	0.0	0.05	16.46	0.01	1.905	8.42	1.62	3.0	97.0	0.0	-0.05	0.47	0.57	0.83	3.61	29553	3788	16	0	5	0	0	logfile
✔	7VAT	31863	2024-02-21	2021-08-30	3.2	2.73	3.10	3.1	0.003	0.53	0.0	0.04	13.43	0.00	1.997	3.69	0.00	1.8	98.2	0.0	1.37	0.63	0.83	3.27	3.0	0.005	0.63	0.0	0.05	16.28	0.01	2.048	6.08	2.11	3.2	96.8	0.0	0.48	0.62	0.68	0.87	3.09	29520	3787	14	0	4	0	0	logfile
✔	7S0C	24786	2024-02-21	2021-08-30	3.25	3.47	—	3.5	0.012	0.93	2.0	0.06	13.41	0.01	1.762	13.60	0.19	5.1	94.7	0.2	-0.32	0.69	0.81	2.60	3.4	0.010	0.70	0.0	0.05	14.78	0.00	1.824	11.42	1.78	4.0	95.9	0.1	-0.26	0.49	0.71	0.84	2.29	29598	3818	16	0	31	0	0	logfile

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