Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7VAN	31853	2024-02-21	2021-08-30	3.0	2.41	2.94	2.8	0.005	0.59	0.0	0.04	13.65	0.00	1.909	3.67	0.00	2.5	97.5	0.0	1.31	0.49	0.76	3.18	2.6	0.003	0.69	1.0	0.04	17.15	0.00	2.001	6.82	1.98	2.1	97.9	0.0	0.51	0.58	0.59	0.84	3.16	29558	3788	15	0	6	0	0	logfile
✔	7VB7	31874	2024-02-21	2021-08-30	2.4	2.41	—	2.4	0.007	0.77	1.0	0.05	16.79	0.01	1.988	6.35	1.28	3.0	96.9	0.1	0.48	0.76	0.90	5.52	2.4	0.004	0.59	0.0	0.04	16.83	0.00	2.093	4.34	1.58	3.3	96.7	0.0	0.61	0.22	0.77	0.91	5.45	29279	3543	45	0	19	736	0	logfile
✔	7PLA	13486	2024-02-14	2021-08-30	3.04	4.14	—	3.1	0.008	1.08	0.0	0.09	26.24	0.00	2.216	9.66	0.26	3.3	96.7	0.0	-0.03	0.74	0.61	1.97	3.1	0.007	0.73	0.0	0.04	24.69	0.00	2.139	19.26	2.33	4.4	95.6	0.0	0.16	0.87	0.84	0.81	1.68	8701	437	4	244	0	0	0	logfile
✔	7S06	24785	2024-02-13	2021-08-30	3.3	3.59	3.40	3.6	0.004	0.66	0.0	0.05	16.63	0.00	2.199	7.68	0.00	6.2	93.8	0.0	0.97	0.65	0.78	2.56	3.6	0.003	0.65	0.0	0.05	16.68	0.00	2.213	8.00	3.47	6.2	93.8	0.0	0.87	1.07	0.69	0.83	2.58	7862	918	8	0	14	0	0	logfile
✔	7VAW	31868	2024-02-21	2021-08-30	2.7	2.11	2.77	2.6	0.004	0.58	0.0	0.04	13.30	0.00	1.960	4.58	0.03	1.4	98.6	0.0	0.85	0.51	0.78	3.78	2.5	0.005	0.69	0.0	0.05	16.46	0.01	1.905	8.42	1.62	3.0	97.0	0.0	-0.05	0.47	0.57	0.83	3.61	29553	3788	16	0	5	0	0	logfile
✔	7VAV	31866	2024-02-21	2021-08-30	2.8	2.66	3.31	3.2	0.002	0.49	0.0	0.04	13.38	0.00	2.035	3.96	0.00	1.5	98.5	0.0	1.80	0.63	0.80	2.95	3.1	0.002	0.55	0.0	0.04	16.50	0.00	2.039	6.02	1.52	2.2	97.8	0.0	0.83	1.09	0.67	0.85	2.82	29520	3787	14	0	4	0	0	logfile
✔	7S0Q	24791	2024-02-16	2021-08-30	3.7	4.24	—	3.8	0.004	0.61	0.0	0.06	16.05	0.00	1.445	10.03	0.00	9.9	90.1	0.0	-4.98	0.82	0.71	0.74	3.8	0.003	0.59	0.0	0.04	13.16	0.00	1.932	12.41	0.82	10.3	89.7	0.0	-2.80	0.77	0.82	0.72	1.12	15357	958	8	0	16	0	7466	logfile
✔	7VB0	31873	2024-02-21	2021-08-30	3.6	2.84	3.39	3.2	0.003	0.55	0.0	0.04	13.60	0.00	1.982	6.16	0.00	1.9	98.1	0.0	0.96	0.63	0.78	2.84	3.2	0.002	0.55	0.0	0.04	16.46	0.00	1.978	8.59	1.72	2.1	97.9	0.0	0.44	0.67	0.66	0.80	2.52	29553	3788	16	0	5	0	0	logfile
✔	7VAD	31837	2024-02-13	2021-08-29	3.41	4.00	—	3.9	0.002	0.59	0.0	0.04	13.01	0.01	2.227	8.39	0.00	7.1	92.9	0.0	0.34	0.64	0.76	1.49	3.9	0.003	0.77	0.0	0.04	16.06	0.00	2.182	12.32	4.95	8.0	92.0	0.0	0.09	0.75	0.61	0.80	2.20	5697	743	3	0	0	0	0	logfile
✔	7VAF	31839	2024-02-13	2021-08-29	3.11	3.67	—	3.6	0.002	0.56	0.0	0.04	13.38	0.00	2.264	8.84	0.00	7.3	92.7	0.0	0.32	0.63	0.80	2.23	3.6	0.003	0.69	0.0	0.04	15.73	0.00	2.089	11.40	3.12	8.5	91.5	0.0	0.13	0.47	0.57	0.79	2.42	5625	734	3	0	0	0	0	logfile
✔	7VAE	31838	2024-02-13	2021-08-29	3.55	4.03	—	4.0	0.003	0.67	0.0	0.04	13.73	0.01	2.212	11.73	0.00	7.5	92.5	0.0	-0.15	0.62	0.76	2.31	4.0	0.003	0.79	0.0	0.04	16.45	0.00	2.196	14.82	4.69	7.9	92.1	0.0	-0.12	0.68	0.58	0.77	1.65	5643	736	3	0	0	0	0	logfile
✔	7PL9	13485	2024-02-23	2021-08-29	3.21	3.18	3.25	3.2	0.006	0.68	0.0	0.08	13.26	0.00	2.209	7.23	0.00	5.3	94.7	0.0	-3.28	0.69	0.79	2.11	3.2	0.003	0.57	0.0	0.04	15.95	0.00	2.219	6.11	3.42	3.0	97.0	0.0	1.97	0.67	0.70	0.85	1.69	37945	4970	10	0	5	0	0	logfile
✔	7VAG	31840	2024-02-13	2021-08-29	3.32	3.68	—	3.7	0.002	0.66	0.0	0.04	13.27	0.00	2.109	7.78	0.15	8.3	91.7	0.0	0.41	0.58	0.76	1.46	3.7	0.003	0.79	0.0	0.04	16.17	0.00	2.148	12.76	3.87	8.3	91.7	0.0	-0.04	1.37	0.55	0.77	2.02	5697	743	3	0	0	0	0	logfile
✔	7RZY	24783	2024-02-17	2021-08-28	3.5	2.57	3.55	4.0	0.014	1.83	0.0	0.08	15.46	0.00	2.491	1.92	0.80	10.2	88.4	1.4	-2.89	0.55	0.40	0.25	3.2	0.004	0.82	0.0	0.04	17.64	0.01	2.106	13.79	3.13	7.5	91.9	0.6	-1.20	1.45	0.70	0.66	0.76	17458	2177	13	0	7	0	0	logfile
✔	7VAB	31836	2024-02-14	2021-08-28	3.2	3.44	—	3.4	0.004	0.80	0.0	0.06	9.19	0.01	2.270	4.38	0.00	1.9	98.1	0.0	-2.44	0.55	0.70	2.90	3.4	0.003	0.54	0.0	0.04	13.92	0.00	2.132	6.43	2.38	2.2	97.8	0.0	0.77	0.73	0.67	0.81	2.97	8772	1077	7	0	6	0	0	logfile
✔	7RZH	24760	2024-02-16	2021-08-27	3.8	3.54	—	3.2	0.012	1.50	6.0	0.11	14.19	0.00	1.444	15.94	5.29	2.6	97.3	0.2	2.98	0.66	0.54	0.28	3.2	0.003	0.76	0.0	0.04	16.43	0.00	2.146	18.14	2.82	3.6	96.4	0.1	0.12	3.17	0.71	0.63	0.46	15300	1867	2	0	0	0	0	logfile
✔	7RZE	24757	2024-02-16	2021-08-27	3.3	3.26	—	3.4	0.005	0.97	0.0	0.06	13.09	0.01	2.098	10.04	0.30	3.9	96.1	0.0	-3.81	0.64	0.77	2.14	3.3	0.003	0.66	0.0	0.04	16.42	0.00	2.155	7.59	2.24	4.5	95.5	0.0	0.06	0.64	0.65	0.81	2.36	15545	1898	4	0	0	0	0	logfile
✔	7RZR	24775	2024-02-13	2021-08-27	2.27	2.24	—	2.0	0.007	0.40	0.0	0.04	14.34	0.00	2.436	3.23	0.00	1.9	98.1	0.0	2.50	0.79	0.80	3.37	2.0	0.003	0.32	0.0	0.03	15.17	0.00	2.285	5.04	0.35	0.0	100.0	0.0	6.38	0.31	0.82	0.83	3.42	2448	324	6	0	0	0	0	logfile
✔	7VA9	31835	2024-02-24	2021-08-27	3.08	2.58	—	2.9	0.020	2.12	0.0	0.05	18.94	0.05	1.992	15.64	2.83	2.3	97.7	0.0	1.34	0.60	0.79	3.23	2.8	0.004	0.74	0.0	0.04	17.71	0.00	1.785	8.33	2.06	1.6	98.4	0.0	2.36	0.53	0.64	0.83	3.17	42176	4350	124	0	131	0	0	logfile
✔	7RZU	24778	2024-02-13	2021-08-27	2.3	2.32	—	2.0	0.006	0.50	0.0	0.04	13.61	0.01	2.212	7.50	0.00	2.9	97.1	0.0	1.69	0.77	0.78	1.84	2.0	0.003	0.54	0.0	0.03	15.53	0.00	2.199	7.70	2.11	0.0	100.0	0.0	5.17	0.52	0.80	0.81	1.81	2439	324	6	0	0	0	0	logfile

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