Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7RZ6	24752	2024-02-20	2021-08-27	4.4	4.29	—	4.5	0.005	0.93	0.0	0.05	10.73	0.01	2.217	4.67	0.46	4.6	95.4	0.0	-4.26	0.54	0.48	—	4.2	0.003	0.69	0.0	0.04	12.80	0.00	2.051	14.08	0.03	4.0	96.0	0.0	-0.74	1.57	0.64	0.75	—	27922	3538	8	0	2	0	0	logfile
✔	7RZ8	24754	2024-02-16	2021-08-27	4.1	3.82	—	4.0	0.011	1.27	0.0	0.06	17.50	0.01	2.246	5.13	0.93	4.1	95.8	0.1	-4.14	0.66	0.74	—	3.7	0.003	0.72	0.0	0.04	15.23	0.00	2.198	14.96	0.00	4.3	95.7	0.0	-0.22	0.94	0.68	0.77	—	16722	2044	8	0	26	0	0	logfile
✔	7RZS	24776	2024-02-13	2021-08-27	2.52	2.32	—	2.1	0.005	0.46	0.0	0.03	14.73	0.00	2.273	3.04	0.00	1.0	99.0	0.0	1.98	0.77	0.79	1.82	2.0	0.003	0.42	0.0	0.03	15.88	0.00	2.317	5.27	1.42	0.0	100.0	0.0	5.62	1.18	0.79	0.82	1.27	2445	324	6	0	0	0	0	logfile
✔	7RZU	24778	2024-02-13	2021-08-27	2.3	2.32	—	2.0	0.006	0.50	0.0	0.04	13.61	0.01	2.212	7.50	0.00	2.9	97.1	0.0	1.69	0.77	0.78	1.84	2.0	0.003	0.54	0.0	0.03	15.53	0.00	2.199	7.70	2.11	0.0	100.0	0.0	5.17	0.52	0.80	0.81	1.81	2439	324	6	0	0	0	0	logfile
✔	7RZV	24779	2024-02-13	2021-08-27	2.11	2.24	—	2.0	0.005	0.35	0.0	0.03	14.68	0.00	2.348	5.44	0.00	0.0	100.0	0.0	3.06	0.79	0.80	2.21	2.0	0.004	0.36	0.0	0.03	16.04	0.00	2.237	5.05	1.35	0.0	100.0	0.0	5.77	0.88	0.83	0.83	1.74	2562	339	6	0	0	0	0	logfile
✔	7VA9	31835	2024-02-24	2021-08-27	3.08	2.58	—	2.9	0.020	2.12	0.0	0.05	18.94	0.05	1.992	15.64	2.83	2.3	97.7	0.0	1.34	0.60	0.79	3.23	2.8	0.004	0.74	0.0	0.04	17.71	0.00	1.785	8.33	2.06	1.6	98.4	0.0	2.36	0.53	0.64	0.83	3.17	42176	4350	124	0	131	0	0	logfile
✔	7V9X	31829	2024-02-14	2021-08-27	2.82	3.18	—	3.1	0.005	0.63	0.0	0.04	24.07	0.00	2.241	6.09	0.00	4.0	96.0	0.0	0.17	0.75	0.85	3.29	3.1	0.003	0.61	0.0	0.04	24.42	0.00	2.243	6.55	1.17	3.7	96.3	0.0	0.52	0.88	0.73	0.85	2.81	10550	760	9	210	0	0	0	logfile
✔	7RZ9	24755	2024-02-20	2021-08-27	4.15	3.58	—	4.1	0.007	0.98	0.0	0.05	10.41	0.01	2.264	3.46	0.26	5.6	94.4	0.0	-5.15	0.68	0.80	—	4.1	0.003	0.60	0.0	0.04	12.97	0.00	2.188	8.60	0.00	3.9	96.1	0.0	-0.12	1.42	0.70	0.78	—	27934	3550	4	0	0	0	0	logfile
✔	7RZF	24758	2024-02-16	2021-08-27	3.4	2.25	—	3.5	0.009	1.19	1.0	0.07	12.93	0.01	1.454	14.43	0.41	4.2	95.8	0.0	-4.07	0.65	0.74	2.52	3.5	0.003	0.68	0.0	0.04	15.63	0.00	2.190	10.60	3.18	4.2	95.8	0.0	-0.61	2.50	0.66	0.77	1.63	15584	1902	4	0	0	0	0	logfile
✔	7RZE	24757	2024-02-16	2021-08-27	3.3	3.26	—	3.4	0.005	0.97	0.0	0.06	13.09	0.01	2.098	10.04	0.30	3.9	96.1	0.0	-3.81	0.64	0.77	2.14	3.3	0.003	0.66	0.0	0.04	16.42	0.00	2.155	7.59	2.24	4.5	95.5	0.0	0.06	0.64	0.65	0.81	2.36	15545	1898	4	0	0	0	0	logfile
✔	7RZA	24756	2024-02-20	2021-08-27	4.26	4.24	—	4.2	0.007	0.98	0.0	0.05	11.53	0.01	2.247	4.48	0.53	4.3	95.7	0.0	-4.39	0.70	0.74	—	4.2	0.004	0.70	0.0	0.04	12.53	0.00	2.062	12.93	0.07	5.6	94.4	0.0	-0.57	1.25	0.71	0.75	—	27850	3532	8	0	4	0	0	logfile
✔	7RZ4	24750	2024-02-20	2021-08-27	3.6	2.91	—	3.6	0.007	0.97	0.0	0.05	14.07	0.01	2.325	2.77	0.26	2.9	97.1	0.0	-3.94	0.68	0.78	2.64	3.5	0.003	0.54	0.0	0.04	15.37	0.00	2.167	5.10	1.87	2.3	97.7	0.0	0.86	1.33	0.72	0.81	2.60	28998	3574	8	0	32	0	0	logfile
✔	7RZR	24775	2024-02-13	2021-08-27	2.27	2.24	—	2.0	0.007	0.40	0.0	0.04	14.34	0.00	2.436	3.23	0.00	1.9	98.1	0.0	2.50	0.79	0.80	3.37	2.0	0.003	0.32	0.0	0.03	15.17	0.00	2.285	5.04	0.35	0.0	100.0	0.0	6.38	0.31	0.82	0.83	3.42	2448	324	6	0	0	0	0	logfile
✔	7RZ5	24751	2024-02-16	2021-08-27	3.3	3.18	—	3.4	0.010	1.19	0.0	0.05	15.37	0.01	2.368	1.91	0.35	3.5	96.5	0.0	-5.41	0.72	0.83	3.34	3.3	0.003	0.58	0.0	0.04	16.03	0.00	2.274	4.41	2.55	2.2	97.8	0.0	0.47	0.62	0.75	0.87	3.23	16770	2046	8	0	28	0	0	logfile
✔	7RZH	24760	2024-02-16	2021-08-27	3.8	3.54	—	3.2	0.012	1.50	6.0	0.11	14.19	0.00	1.444	15.94	5.29	2.6	97.3	0.2	2.98	0.66	0.54	0.28	3.2	0.003	0.76	0.0	0.04	16.43	0.00	2.146	18.14	2.82	3.6	96.4	0.1	0.12	3.17	0.71	0.63	0.46	15300	1867	2	0	0	0	0	logfile
✔	7PKP	13476	2024-02-18	2021-08-26	3.1	3.25	—	3.2	0.008	0.69	0.0	0.04	14.18	0.00	2.238	15.25	0.00	8.7	91.3	0.0	-4.06	0.76	0.83	2.79	3.2	0.003	0.52	0.0	0.04	15.95	0.00	2.316	7.26	3.12	4.8	95.2	0.0	-0.70	1.15	0.71	0.82	2.75	20360	2504	8	0	0	0	0	logfile
✔	7RYS	24747	2024-02-17	2021-08-26	3.7	3.49	—	3.6	0.007	1.11	0.0	0.06	18.24	0.01	2.247	6.73	0.30	5.7	94.3	0.0	-1.42	0.68	0.70	1.94	3.6	0.003	0.70	0.0	0.04	16.13	0.00	2.107	6.65	1.58	4.0	96.0	0.0	0.33	0.53	0.68	0.70	1.89	12900	1556	8	0	32	0	0	logfile
✔	7RYR	24746	2024-02-17	2021-08-26	3.6	3.52	—	3.6	0.007	1.12	4.0	0.06	19.14	0.01	2.197	7.18	0.60	7.0	93.0	0.0	-1.65	0.76	0.81	1.67	3.6	0.002	0.66	0.0	0.04	16.71	0.00	2.230	5.72	3.83	4.5	95.5	0.0	0.39	0.54	0.76	0.82	1.41	13024	1556	8	0	32	0	0	logfile
✔	7PKS	13479	2024-02-22	2021-08-26	3.6	4.27	3.31	2.8	0.004	0.78	0.0	0.05	14.55	0.01	1.638	5.38	0.00	4.0	95.9	0.0	-0.87	0.76	0.62	1.06	2.8	0.003	0.63	0.0	0.04	15.50	0.00	2.047	12.31	0.67	3.8	96.1	0.0	1.21	1.57	0.85	0.81	1.05	101147	13139	41	74	118	0	0	logfile
✔	7PKQ	13477	2024-02-17	2021-08-26	4.2	4.26	4.62	4.1	0.009	1.42	20.0	0.08	21.64	0.01	2.123	9.00	0.89	6.0	93.8	0.3	-2.71	0.63	0.61	—	4.1	0.004	0.78	0.0	0.04	21.20	0.01	2.001	20.85	0.05	8.0	91.9	0.1	-1.32	0.85	0.65	0.66	—	70313	4968	44	1114	1722	0	0	logfile

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