Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7PKP	13476	2024-02-18	2021-08-26	3.1	3.25	—	3.2	0.008	0.69	0.0	0.04	14.18	0.00	2.238	15.25	0.00	8.7	91.3	0.0	-4.06	0.76	0.83	2.79	3.2	0.003	0.52	0.0	0.04	15.95	0.00	2.316	7.26	3.12	4.8	95.2	0.0	-0.70	1.15	0.71	0.82	2.75	20360	2504	8	0	0	0	0	logfile
✔	7PKo	13474	2024-02-18	2021-08-26	3.9	4.01	—	3.9	0.004	0.66	0.0	0.04	14.59	0.00	2.205	10.80	0.00	7.5	92.5	0.0	-4.16	0.76	0.82	2.59	3.9	0.003	0.60	0.0	0.04	16.19	0.00	2.162	10.87	3.74	4.8	95.2	0.0	-0.51	0.58	0.75	0.81	2.25	20368	2504	8	0	0	0	0	logfile
✔	7RYZ	24749	2024-02-16	2021-08-26	4.15	3.50	—	3.4	0.008	0.95	0.0	0.05	10.88	0.01	2.225	4.30	0.24	3.4	96.6	0.0	-4.55	0.73	0.77	—	3.4	0.004	0.68	0.0	0.04	12.87	0.00	2.083	13.48	0.00	4.0	96.0	0.0	-0.14	2.04	0.74	0.78	—	15742	2014	8	0	4	0	0	logfile
✔	7V9M	31825	2024-02-13	2021-08-26	3.29	2.28	—	2.1	0.004	0.65	0.0	0.05	13.19	0.01	2.195	4.52	0.23	4.4	95.6	0.0	-0.30	0.72	0.72	3.08	2.1	0.004	0.66	0.0	0.04	15.70	0.00	2.139	10.52	3.76	3.7	96.3	0.0	0.34	1.15	0.73	0.75	1.92	8138	1029	6	0	0	0	0	logfile
✔	7PKQ	13477	2024-02-17	2021-08-26	4.2	4.26	4.62	4.1	0.009	1.42	20.0	0.08	21.64	0.01	2.123	9.00	0.89	6.0	93.8	0.3	-2.71	0.63	0.61	—	4.1	0.004	0.78	0.0	0.04	21.20	0.01	2.001	20.85	0.05	8.0	91.9	0.1	-1.32	0.85	0.65	0.66	—	70313	4968	44	1114	1722	0	0	logfile
✔	7PKS	13479	2024-02-22	2021-08-26	3.6	4.27	3.31	2.8	0.004	0.78	0.0	0.05	14.55	0.01	1.638	5.38	0.00	4.0	95.9	0.0	-0.87	0.76	0.62	1.06	2.8	0.003	0.63	0.0	0.04	15.50	0.00	2.047	12.31	0.67	3.8	96.1	0.0	1.21	1.57	0.85	0.81	1.05	101147	13139	41	74	118	0	0	logfile
✔	7RYG	24739	2024-02-20	2021-08-25	2.38	1.92	—	2.2	0.006	0.61	0.0	0.07	23.29	0.02	1.799	3.76	2.32	2.6	97.2	0.1	1.15	0.77	0.74	3.06	1.6	0.004	0.76	0.0	0.05	23.03	0.01	1.788	5.31	4.60	2.9	97.0	0.1	0.34	1.12	0.78	0.76	3.06	137579	5505	55	4408	8	0	0	logfile
✔	7PKB	13467	2024-02-16	2021-08-25	3.2	2.68	3.08	3.1	0.008	0.90	0.0	0.14	13.28	0.01	1.950	3.97	0.00	5.1	94.8	0.1	-0.98	0.72	0.85	5.32	3.2	0.004	0.70	0.0	0.14	13.47	0.00	2.006	3.04	0.11	3.6	96.4	0.0	-0.31	0.59	0.73	0.87	4.88	16145	1030	15	0	10	5	7970	logfile
✔	7PKD	13468	2024-02-22	2021-08-25	3.3	3.31	3.25	3.3	0.009	0.90	0.0	0.15	13.30	0.00	2.086	3.20	0.00	3.9	96.1	0.0	-0.82	0.79	0.89	4.99	3.3	0.003	0.70	0.0	0.15	14.38	0.00	2.050	4.31	1.11	2.2	97.8	0.0	-0.17	0.56	0.76	0.90	4.41	32400	2060	30	0	30	10	15940	logfile
✔	7PKF	13470	2024-02-21	2021-08-25	2.8	2.64	2.80	2.8	0.004	0.90	0.0	0.16	13.32	0.01	1.918	4.90	0.00	4.3	95.7	0.0	-0.68	0.72	0.86	5.63	2.7	0.003	0.75	0.0	0.16	14.66	0.00	2.114	3.72	0.89	1.6	98.4	0.0	0.13	1.34	0.73	0.88	5.06	32310	2060	30	0	20	10	15960	logfile
✔	7PK6	13466	2024-02-16	2021-08-25	2.15	2.27	2.23	2.3	0.007	0.61	0.0	0.05	17.38	0.01	1.864	4.25	2.22	2.0	98.0	0.0	1.43	0.73	0.77	4.80	2.2	0.004	0.60	0.0	0.05	17.76	0.00	2.115	6.89	2.31	2.8	97.2	0.0	1.31	0.87	0.78	0.89	5.10	120580	15100	20	0	0	0	0	logfile
✔	7PKH	13472	2024-02-22	2021-08-25	3.0	2.80	2.91	2.9	0.009	0.99	0.0	0.16	13.27	0.01	2.024	4.15	0.00	4.1	95.9	0.0	-0.72	0.76	0.87	5.58	2.9	0.003	0.73	0.0	0.16	14.70	0.00	2.034	4.21	0.78	1.8	98.2	0.0	0.08	1.01	0.76	0.88	4.72	32420	2060	30	0	30	10	15960	logfile
✔	7RYE	24735	2024-02-17	2021-08-25	3.9	4.10	—	4.0	0.003	0.65	0.0	0.04	14.57	0.00	2.090	14.13	0.00	3.7	96.3	0.0	1.07	0.76	0.69	-0.18	4.0	0.003	0.72	0.0	0.04	17.76	0.00	2.100	15.41	3.80	4.0	96.0	0.0	1.41	1.07	0.81	0.80	0.20	19708	2535	24	0	0	0	0	logfile
✔	7PKG	13471	2024-02-16	2021-08-25	3.3	2.97	3.19	3.2	0.005	0.85	0.0	0.17	13.68	0.01	2.156	4.65	0.00	5.5	94.5	0.0	-1.10	0.69	0.84	5.60	3.2	0.003	0.76	0.0	0.16	14.39	0.00	2.053	3.72	0.44	3.0	97.0	0.0	-0.39	0.57	0.70	0.86	4.92	16155	1030	15	0	10	5	7980	logfile
✔	7RYP	24744	2024-02-15	2021-08-25	4.8	5.38	4.84	6.5	0.015	1.50	0.0	0.07	10.94	0.01	2.098	4.80	0.00	6.2	92.1	1.7	-1.44	0.78	0.73	—	6.5	0.004	0.68	0.0	0.04	12.98	0.00	2.023	16.46	0.00	12.0	87.7	0.3	-1.20	0.97	0.77	0.72	—	11293	725	2	0	0	0	5599	logfile
✔	7RYQ	24745	2024-02-13	2021-08-25	4.6	6.00	4.65	4.8	0.005	1.08	0.0	0.06	15.48	0.01	1.251	39.25	6.25	10.7	88.9	0.4	-1.51	0.85	0.76	—	4.9	0.003	0.74	0.0	0.04	14.12	0.01	2.126	14.78	0.00	6.8	93.2	0.0	-0.17	1.21	0.85	0.76	—	4332	527	1	0	0	0	0	logfile
✔	7RYF	24738	2024-02-20	2021-08-25	2.65	2.01	—	2.3	0.006	0.61	0.0	0.07	22.82	0.02	1.764	4.27	0.02	2.5	97.4	0.1	1.04	0.76	0.73	2.78	1.6	0.004	0.75	0.0	0.05	22.88	0.01	1.795	6.77	4.16	2.9	97.1	0.1	0.26	0.35	0.79	0.76	2.63	137516	5497	55	4408	8	0	0	logfile
✔	7PKN	13473	2024-02-17	2021-08-25	3.2	3.78	—	3.4	0.002	0.55	0.0	0.04	12.63	0.00	2.106	6.10	0.00	2.6	97.4	0.0	2.14	0.77	0.75	1.23	3.4	0.003	0.63	0.0	0.04	15.34	0.00	2.176	7.94	1.29	3.2	96.8	0.0	2.10	0.80	0.81	0.85	1.91	18616	2310	12	0	0	1	0	logfile
✔	7RYH	24740	2024-02-19	2021-08-25	2.43	1.94	—	2.2	0.005	0.61	0.0	0.07	23.26	0.02	1.844	3.77	2.55	2.2	97.7	0.1	1.17	0.77	0.74	2.99	1.6	0.007	0.95	0.0	0.05	23.14	0.01	1.824	5.69	4.72	2.9	96.9	0.2	0.13	0.30	0.79	0.76	3.10	135829	5499	53	4328	8	0	0	logfile
✔	7V9C	31815	2024-02-18	2021-08-24	4.5	3.01	4.36	3.5	0.002	0.44	0.0	0.03	28.92	0.00	2.240	8.56	1.27	5.0	94.1	0.9	-0.37	0.60	0.38	—	2.9	0.005	0.77	0.0	0.04	29.15	0.01	2.069	23.07	0.32	5.1	94.6	0.3	0.35	1.59	0.73	0.60	—	23228	1518	18	546	0	0	0	logfile

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