Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7PJW	13462	2024-02-29	2021-08-24	4.0	4.18	3.62	4.0	0.007	0.95	3.0	0.05	24.06	0.02	1.344	23.05	0.46	13.5	86.3	0.2	-4.51	0.71	0.76	—	4.0	0.004	0.75	2.0	0.04	23.79	0.01	1.854	18.72	3.50	8.2	91.8	0.0	-1.93	1.78	0.72	0.78	—	152719	6657	61	4728	2	0	0	logfile
✔	7V96	31810	2024-02-19	2021-08-24	3.92	4.00	3.84	4.0	0.011	1.59	35.0	0.11	30.75	0.01	1.891	6.46	15.66	4.7	94.5	0.8	-1.38	0.71	0.74	1.81	4.0	0.003	0.60	0.0	0.03	28.55	0.00	2.199	10.33	3.09	4.5	95.4	0.1	-0.61	1.21	0.75	0.81	1.15	23968	1593	18	550	0	0	0	logfile
✔	7RYC	24733	2024-02-14	2021-08-24	2.9	2.34	—	3.0	0.006	0.86	0.0	0.05	13.76	0.00	2.198	5.49	0.38	4.9	95.1	0.0	-2.98	0.80	0.77	2.64	3.0	0.003	0.61	0.0	0.04	15.80	0.00	2.196	3.74	2.25	2.7	97.3	0.0	-0.08	0.45	0.81	0.80	2.43	8277	1125	6	0	2	0	0	logfile
✔	7V9C	31815	2024-02-18	2021-08-24	4.5	3.01	4.36	3.5	0.002	0.44	0.0	0.03	28.92	0.00	2.240	8.56	1.27	5.0	94.1	0.9	-0.37	0.60	0.38	—	2.9	0.005	0.77	0.0	0.04	29.15	0.01	2.069	23.07	0.32	5.1	94.6	0.3	0.35	1.59	0.73	0.60	—	23228	1518	18	546	0	0	0	logfile
✔	7V90	31806	2024-02-15	2021-08-24	3.5	3.21	3.42	3.5	0.005	0.73	3.0	0.04	26.09	0.00	2.219	8.45	4.01	4.7	94.8	0.5	-0.16	0.66	0.78	2.00	3.4	0.003	0.54	0.0	0.03	27.20	0.00	2.212	6.14	2.62	4.1	95.9	0.0	2.51	1.09	0.73	0.84	2.26	12148	781	10	290	0	0	0	logfile
✔	7V99	31811	2024-02-16	2021-08-24	3.54	4.33	—	3.3	0.002	0.53	0.0	0.03	20.83	0.00	2.258	7.85	0.10	5.9	94.1	0.1	-3.21	0.79	0.68	0.93	3.3	0.002	0.59	0.0	0.03	21.18	0.00	2.191	12.80	1.60	5.9	94.0	0.1	-0.17	1.38	0.82	0.76	0.55	14582	1170	5	249	0	0	0	logfile
✔	7RXG	24730	2024-02-15	2021-08-23	2.28	2.01	—	2.3	0.008	1.27	0.0	0.05	22.39	0.00	2.211	14.00	0.18	2.5	97.4	0.2	-0.83	0.61	0.82	4.82	2.3	0.003	0.53	0.0	0.04	18.71	0.00	1.989	16.23	1.79	2.7	97.3	0.0	1.60	0.91	0.66	0.87	5.07	11380	1300	6	0	26	48	96	logfile
✔	7RXH	24731	2024-02-13	2021-08-23	2.3	3.07	—	2.8	0.009	1.40	0.0	0.05	24.73	0.00	2.211	13.92	0.56	2.7	97.1	0.2	-0.87	0.63	0.78	3.25	2.8	0.003	0.46	0.0	0.04	17.02	0.00	1.955	15.81	0.93	3.2	96.8	0.0	2.20	1.67	0.60	0.90	3.81	5631	626	1	0	18	24	48	logfile
✔	7V8i	31802	2024-02-14	2021-08-23	3.6	3.75	—	3.7	0.005	0.87	0.0	0.05	15.81	0.01	2.007	11.55	1.36	3.9	95.8	0.3	-0.76	0.59	0.61	1.25	3.7	0.004	0.69	0.0	0.04	17.06	0.00	1.930	12.41	2.51	4.4	95.5	0.1	-0.72	1.14	0.66	0.71	1.13	9388	1261	6	0	4	0	0	logfile
✔	7V8M	31804	2024-02-14	2021-08-23	4.2	4.31	—	4.2	0.004	0.81	0.0	0.05	13.86	0.01	2.046	15.98	0.10	4.1	95.9	0.0	-0.28	0.67	0.72	—	4.2	0.003	0.70	0.0	0.04	14.04	0.00	2.197	13.58	0.10	4.3	95.7	0.0	0.33	0.60	0.68	0.78	—	9338	1263	4	0	0	0	0	logfile
✔	7PiU	13453	2024-02-13	2021-08-23	2.58	2.73	—	2.7	0.013	1.71	0.0	0.09	14.83	0.00	2.250	3.33	0.97	4.1	95.8	0.1	-2.07	0.70	0.88	4.78	2.7	0.003	0.54	0.0	0.04	16.30	0.00	2.137	5.68	2.07	1.8	98.2	0.0	2.00	0.94	0.69	0.88	4.62	7788	974	12	0	3	88	0	logfile
✔	7PiV	13454	2024-02-13	2021-08-23	2.86	2.87	—	3.2	0.013	1.71	1.0	0.10	13.14	0.00	2.234	3.79	0.86	5.7	94.1	0.2	-2.91	0.70	0.84	3.61	3.2	0.005	1.07	0.0	0.04	14.99	0.00	2.135	7.32	2.93	2.9	97.1	0.0	1.02	1.27	0.69	0.85	3.17	7814	976	12	0	2	115	0	logfile
✔	7RXC	24728	2024-02-14	2021-08-22	3.2	2.84	—	3.2	0.006	0.78	0.0	0.04	14.27	0.01	2.089	9.58	0.00	2.3	97.7	0.0	1.18	0.66	0.79	2.95	3.2	0.004	0.57	0.0	0.04	15.94	0.00	2.145	9.58	1.80	2.9	97.1	0.0	0.76	0.35	0.64	0.82	2.77	9360	1178	7	0	6	0	0	logfile
✔	7RXB	24727	2024-02-14	2021-08-22	3.07	3.22	—	3.2	0.009	1.15	0.0	0.05	16.23	0.01	2.437	0.72	0.00	6.0	94.0	0.0	-4.88	0.67	0.89	3.48	3.2	0.004	0.58	0.0	0.04	15.46	0.00	2.370	1.98	0.76	5.3	94.7	0.0	-0.75	0.24	0.64	0.89	3.34	8506	1096	4	0	8	0	0	logfile
✔	7RXA	24726	2024-02-14	2021-08-22	3.08	3.22	—	3.3	0.006	1.11	0.0	0.05	17.17	0.01	2.381	1.32	0.00	5.4	94.6	0.0	-4.42	0.67	0.84	2.99	3.3	0.003	0.56	0.0	0.04	14.81	0.00	2.257	2.75	1.76	4.7	95.3	0.0	0.70	0.30	0.67	0.85	3.04	8694	1156	4	0	8	0	0	logfile
✔	7V87	31792	2024-02-13	2021-08-22	3.3	3.93	—	3.6	0.003	0.65	0.0	0.05	16.49	0.00	2.167	6.58	0.00	5.4	94.6	0.0	-0.21	0.79	0.84	2.44	3.6	0.003	0.58	0.0	0.04	15.78	0.00	2.046	6.50	2.57	5.4	94.6	0.0	0.21	0.33	0.79	0.86	2.39	6617	797	6	0	12	0	0	logfile
✔	7V83	31788	2024-02-23	2021-08-22	2.8	3.28	—	3.2	0.005	0.63	0.0	0.05	14.99	0.00	2.147	10.09	0.00	5.7	94.3	0.0	-0.33	0.76	0.79	1.90	3.2	0.003	0.60	0.0	0.04	15.40	0.00	2.131	8.66	1.33	5.0	95.0	0.0	-0.08	0.36	0.75	0.78	1.71	40162	4902	40	0	89	0	0	logfile
✔	7V82	31787	2024-02-23	2021-08-22	2.8	3.88	—	3.0	0.005	0.62	0.0	0.05	15.22	0.00	2.150	10.11	0.00	5.1	94.9	0.0	-0.41	0.84	0.78	1.93	3.0	0.002	0.60	0.0	0.04	15.08	0.00	2.187	9.54	1.14	5.2	94.8	0.0	-0.06	0.31	0.87	0.83	1.59	40092	4902	39	0	84	0	0	logfile
✔	7V8B	31796	2024-02-13	2021-08-22	3.2	3.85	—	3.6	0.003	0.59	0.0	0.04	15.61	0.00	2.308	6.16	0.00	5.0	94.8	0.1	-0.34	0.79	0.85	2.31	3.6	0.002	0.58	0.0	0.04	15.54	0.00	2.188	6.09	1.57	5.2	94.7	0.1	0.28	1.16	0.79	0.88	2.36	6650	797	9	0	14	0	0	logfile
✔	7V88	31793	2024-02-22	2021-08-22	3.3	4.01	—	3.6	0.005	0.63	0.0	0.05	14.13	0.00	2.106	12.04	0.00	5.7	94.3	0.1	-0.29	0.86	0.84	1.72	3.7	0.003	0.60	0.0	0.04	14.95	0.00	2.117	10.44	1.33	5.3	94.7	0.0	-0.11	0.31	0.86	0.86	1.46	35098	4281	47	0	89	0	0	logfile

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