Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7V8C	31798	2024-02-19	2021-08-22	3.4	3.98	—	3.8	0.005	0.67	0.0	0.05	13.40	0.00	2.102	10.89	0.00	6.8	93.0	0.2	-0.58	0.82	0.75	1.60	3.7	0.006	0.66	0.0	0.05	14.40	0.00	2.005	11.33	2.33	7.1	92.7	0.2	-0.70	1.62	0.83	0.79	1.58	25197	3088	35	0	75	0	0	logfile
✔	7V89	31794	2024-02-23	2021-08-22	2.8	3.36	—	3.2	0.003	0.58	0.0	0.05	14.39	0.00	2.128	8.98	0.00	4.8	95.2	0.0	0.26	0.79	0.80	1.92	3.2	0.004	0.66	0.0	0.05	15.51	0.00	2.167	8.85	1.99	5.8	94.1	0.0	0.14	1.62	0.79	0.82	1.89	40034	4869	54	0	100	0	0	logfile
✔	7V8A	31795	2024-02-23	2021-08-22	2.7	3.21	—	3.1	0.004	0.58	0.0	0.04	14.61	0.00	2.123	10.02	0.00	4.9	95.1	0.0	-0.03	0.74	0.78	1.70	3.1	0.004	0.63	0.0	0.05	15.71	0.00	2.145	9.31	2.18	5.2	94.7	0.0	-0.07	1.22	0.76	0.82	1.81	39922	4869	50	0	92	0	0	logfile
✔	7V8B	31796	2024-02-13	2021-08-22	3.2	3.85	—	3.6	0.003	0.59	0.0	0.04	15.61	0.00	2.308	6.16	0.00	5.0	94.8	0.1	-0.34	0.79	0.85	2.31	3.6	0.002	0.58	0.0	0.04	15.54	0.00	2.188	6.09	1.57	5.2	94.7	0.1	0.28	1.16	0.79	0.88	2.36	6650	797	9	0	14	0	0	logfile
✔	7V87	31792	2024-02-13	2021-08-22	3.3	3.93	—	3.6	0.003	0.65	0.0	0.05	16.49	0.00	2.167	6.58	0.00	5.4	94.6	0.0	-0.21	0.79	0.84	2.44	3.6	0.003	0.58	0.0	0.04	15.78	0.00	2.046	6.50	2.57	5.4	94.6	0.0	0.21	0.33	0.79	0.86	2.39	6617	797	6	0	12	0	0	logfile
✔	7V82	31787	2024-02-23	2021-08-22	2.8	3.88	—	3.0	0.005	0.62	0.0	0.05	15.22	0.00	2.150	10.11	0.00	5.1	94.9	0.0	-0.41	0.84	0.78	1.93	3.0	0.002	0.60	0.0	0.04	15.08	0.00	2.187	9.54	1.14	5.2	94.8	0.0	-0.06	0.31	0.87	0.83	1.59	40092	4902	39	0	84	0	0	logfile
✔	7V84	31789	2024-02-13	2021-08-22	3.0	3.81	—	3.5	0.003	0.54	0.0	0.04	16.31	0.00	2.199	5.95	0.00	4.3	95.7	0.0	-0.37	0.82	0.87	2.88	3.5	0.003	0.61	0.0	0.04	15.35	0.00	2.180	6.56	0.86	4.7	95.3	0.0	0.03	0.36	0.78	0.84	3.04	6636	797	9	0	13	0	0	logfile
✔	7V86	31791	2024-02-23	2021-08-22	2.8	3.32	—	3.2	0.004	0.60	0.0	0.05	13.94	0.00	2.163	9.23	0.00	5.3	94.7	0.0	-0.17	0.77	0.78	2.00	3.2	0.003	0.63	0.0	0.04	15.43	0.00	2.149	8.70	1.79	5.5	94.5	0.0	-0.25	0.48	0.75	0.78	1.78	39996	4881	47	0	87	0	0	logfile
✔	7V83	31788	2024-02-23	2021-08-22	2.8	3.28	—	3.2	0.005	0.63	0.0	0.05	14.99	0.00	2.147	10.09	0.00	5.7	94.3	0.0	-0.33	0.76	0.79	1.90	3.2	0.003	0.60	0.0	0.04	15.40	0.00	2.131	8.66	1.33	5.0	95.0	0.0	-0.08	0.36	0.75	0.78	1.71	40162	4902	40	0	89	0	0	logfile
✔	7V88	31793	2024-02-22	2021-08-22	3.3	4.01	—	3.6	0.005	0.63	0.0	0.05	14.13	0.00	2.106	12.04	0.00	5.7	94.3	0.1	-0.29	0.86	0.84	1.72	3.7	0.003	0.60	0.0	0.04	14.95	0.00	2.117	10.44	1.33	5.3	94.7	0.0	-0.11	0.31	0.86	0.86	1.46	35098	4281	47	0	89	0	0	logfile
✔	7V7H	31771	2024-02-25	2021-08-21	3.2	4.02	—	3.7	0.004	0.62	0.0	0.05	14.69	0.00	2.162	7.22	0.00	4.2	95.7	0.1	-0.31	0.85	0.85	1.93	3.7	0.005	0.65	1.0	0.05	14.33	0.00	2.095	7.76	1.18	4.6	95.3	0.0	-0.17	1.14	0.85	0.85	1.87	50949	6209	84	0	174	0	0	logfile
✔	7V77	31761	2024-02-19	2021-08-21	3.3	3.76	—	3.6	0.005	0.65	0.0	0.05	13.98	0.00	2.077	8.53	0.00	6.2	93.7	0.1	-0.49	0.77	0.77	2.10	3.6	0.005	0.63	0.0	0.05	14.37	0.00	2.135	8.67	1.63	6.1	93.8	0.1	-0.65	0.35	0.80	0.82	1.86	25293	3102	36	0	77	0	0	logfile
✔	7V7i	31772	2024-02-25	2021-08-21	3.3	4.09	—	3.8	0.005	0.67	0.0	0.05	14.45	0.00	2.128	8.29	0.00	5.4	94.5	0.2	-0.23	0.86	0.85	2.37	3.8	0.003	0.55	0.0	0.04	14.14	0.00	1.980	6.73	1.25	4.6	95.3	0.1	-0.04	0.31	0.87	0.87	1.87	51072	6228	84	0	174	0	0	logfile
✔	7V7D	31767	2024-02-19	2021-08-21	3.0	3.88	—	3.3	0.005	0.63	0.0	0.05	13.57	0.00	2.088	6.90	0.00	4.3	95.7	0.0	0.03	0.87	0.85	2.00	3.3	0.005	0.63	0.0	0.05	14.20	0.00	2.105	8.96	1.22	5.2	94.7	0.1	-0.12	0.35	0.87	0.86	2.00	25353	3095	40	0	82	0	0	logfile
✔	7V7V	31783	2024-02-19	2021-08-21	3.1	3.59	—	3.5	0.004	0.58	0.0	0.05	14.23	0.00	2.145	6.07	0.00	4.0	95.9	0.1	0.39	0.80	0.83	1.92	3.4	0.011	0.82	0.0	0.05	14.44	0.01	2.140	7.27	1.89	5.7	94.2	0.1	-0.30	1.17	0.83	0.87	1.80	25304	3089	42	0	84	0	0	logfile
✔	7V7A	31764	2024-02-19	2021-08-21	3.4	3.92	—	3.8	0.004	0.61	0.0	0.05	14.86	0.00	2.137	7.80	0.04	3.8	96.1	0.1	-0.10	0.77	0.77	2.30	3.8	0.011	0.86	0.0	0.05	14.57	0.01	2.092	10.80	1.73	7.6	92.3	0.1	-0.92	0.38	0.81	0.83	2.07	25579	3119	38	0	86	0	0	logfile
✔	7V7P	31777	2024-02-19	2021-08-21	2.9	3.73	—	3.2	0.004	0.61	0.0	0.05	13.70	0.00	2.191	5.56	0.00	4.2	95.6	0.2	0.06	0.89	0.88	2.27	3.2	0.005	0.59	0.0	0.05	14.04	0.00	2.183	6.72	1.00	4.9	95.0	0.1	0.19	1.14	0.89	0.87	2.08	25371	3096	42	0	84	0	0	logfile
✔	7V7E	31768	2024-02-19	2021-08-21	2.9	3.84	—	3.2	0.004	0.62	0.0	0.05	14.06	0.00	2.106	7.79	0.00	5.0	95.0	0.1	-0.18	0.87	0.84	2.51	3.2	0.004	0.59	0.0	0.05	14.18	0.00	2.171	8.39	1.40	5.1	94.8	0.1	-0.06	1.14	0.87	0.85	2.04	25340	3093	40	0	82	0	0	logfile
✔	7V7G	31770	2024-02-19	2021-08-21	3.1	3.93	—	3.3	0.004	0.62	0.0	0.05	13.60	0.00	2.168	7.85	0.04	5.6	94.3	0.1	-0.14	0.87	0.85	2.49	3.3	0.004	0.60	0.0	0.05	14.40	0.00	2.160	9.17	1.18	6.3	93.6	0.1	-0.17	1.13	0.88	0.86	2.10	25461	3114	39	0	81	0	0	logfile
✔	7V7Q	31778	2024-02-19	2021-08-21	2.8	3.73	—	3.2	0.004	0.58	0.0	0.05	14.00	0.00	2.148	6.16	0.00	3.9	96.0	0.1	0.05	0.89	0.87	2.71	3.2	0.003	0.56	0.0	0.04	14.11	0.00	2.190	5.86	1.00	4.3	95.6	0.1	0.32	1.13	0.88	0.87	2.40	25371	3096	42	0	84	0	0	logfile

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