Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7RX3	24723	2024-02-14	2021-08-21	3.3	3.49	—	3.4	0.009	1.37	0.0	0.06	22.83	0.01	2.327	6.98	0.20	7.5	92.5	0.0	-3.98	0.74	0.84	3.22	3.4	0.003	0.56	0.0	0.04	18.54	0.00	2.205	4.87	1.67	6.6	93.4	0.0	0.95	0.42	0.73	0.86	2.51	10130	1182	4	0	16	0	0	logfile
✔	7V7C	31766	2024-02-23	2021-08-21	3.7	2.55	—	2.0	0.005	0.86	0.0	0.05	9.60	0.01	2.268	5.66	0.09	9.0	91.0	0.0	-4.75	0.68	0.69	1.95	2.0	0.003	0.72	0.0	0.05	14.35	0.00	2.157	13.26	1.77	7.8	92.2	0.0	-2.04	1.30	0.69	0.68	1.35	40264	5084	8	0	0	0	0	logfile
✔	7V7F	31769	2024-02-19	2021-08-21	2.9	3.82	—	3.2	0.005	0.63	0.0	0.05	13.39	0.00	2.061	7.26	0.00	5.1	94.7	0.1	-0.13	0.88	0.86	2.44	3.2	0.007	0.69	0.0	0.05	14.30	0.00	2.084	8.95	1.36	6.2	93.7	0.1	-0.34	0.28	0.89	0.88	2.34	25503	3114	42	0	84	0	0	logfile
✔	7V7V	31783	2024-02-19	2021-08-21	3.1	3.59	—	3.5	0.004	0.58	0.0	0.05	14.23	0.00	2.145	6.07	0.00	4.0	95.9	0.1	0.39	0.80	0.83	1.92	3.4	0.011	0.82	0.0	0.05	14.44	0.01	2.140	7.27	1.89	5.7	94.2	0.1	-0.30	1.17	0.83	0.87	1.80	25304	3089	42	0	84	0	0	logfile
✔	7V7i	31772	2024-02-25	2021-08-21	3.3	4.09	—	3.8	0.005	0.67	0.0	0.05	14.45	0.00	2.128	8.29	0.00	5.4	94.5	0.2	-0.23	0.86	0.85	2.37	3.8	0.003	0.55	0.0	0.04	14.14	0.00	1.980	6.73	1.25	4.6	95.3	0.1	-0.04	0.31	0.87	0.87	1.87	51072	6228	84	0	174	0	0	logfile
✔	7V7P	31777	2024-02-19	2021-08-21	2.9	3.73	—	3.2	0.004	0.61	0.0	0.05	13.70	0.00	2.191	5.56	0.00	4.2	95.6	0.2	0.06	0.89	0.88	2.27	3.2	0.005	0.59	0.0	0.05	14.04	0.00	2.183	6.72	1.00	4.9	95.0	0.1	0.19	1.14	0.89	0.87	2.08	25371	3096	42	0	84	0	0	logfile
✔	7V7o	31776	2024-02-19	2021-08-21	2.9	3.72	—	3.2	0.007	0.69	0.0	0.05	14.12	0.00	2.158	7.07	0.00	5.5	94.4	0.1	-0.05	0.89	0.88	2.42	3.2	0.007	0.65	0.0	0.05	14.30	0.00	2.140	7.39	1.04	5.3	94.6	0.1	0.16	0.25	0.89	0.88	2.12	25325	3092	41	0	83	0	0	logfile
✔	7V7U	31782	2024-02-19	2021-08-21	3.0	3.56	—	3.4	0.005	0.64	0.0	0.05	14.00	0.00	2.194	7.34	0.00	4.8	95.1	0.1	0.24	0.81	0.84	2.19	3.4	0.008	0.72	0.0	0.05	14.47	0.00	2.144	7.34	1.89	4.7	95.3	0.1	-0.04	0.42	0.81	0.85	2.13	25283	3088	41	0	83	0	0	logfile
✔	7V7R	31779	2024-02-19	2021-08-21	2.9	3.74	—	3.2	0.004	0.61	0.0	0.05	13.57	0.00	2.163	6.28	0.00	4.5	95.4	0.1	0.06	0.89	0.87	2.64	3.2	0.002	0.57	0.0	0.04	14.02	0.00	2.154	6.02	0.92	3.9	96.0	0.1	0.30	0.28	0.89	0.88	2.07	25362	3095	42	0	84	0	0	logfile
✔	7V7D	31767	2024-02-19	2021-08-21	3.0	3.88	—	3.3	0.005	0.63	0.0	0.05	13.57	0.00	2.088	6.90	0.00	4.3	95.7	0.0	0.03	0.87	0.85	2.00	3.3	0.005	0.63	0.0	0.05	14.20	0.00	2.105	8.96	1.22	5.2	94.7	0.1	-0.12	0.35	0.87	0.86	2.00	25353	3095	40	0	82	0	0	logfile
✔	7V79	31763	2024-02-19	2021-08-21	3.3	3.77	—	3.7	0.006	0.66	0.0	0.05	16.28	0.00	2.099	7.53	0.00	5.8	94.1	0.0	-0.49	0.71	0.77	2.36	3.7	0.004	0.60	0.0	0.05	14.53	0.00	2.176	6.48	2.49	4.9	95.1	0.0	-0.51	0.36	0.79	0.84	2.39	25677	3125	40	0	89	0	0	logfile
✔	7V7S	31780	2024-02-19	2021-08-21	3.0	3.84	—	3.3	0.004	0.59	0.0	0.05	13.70	0.00	2.197	7.39	0.00	3.9	96.0	0.0	0.13	0.88	0.86	1.94	3.3	0.003	0.56	0.0	0.04	14.33	0.00	2.199	7.67	1.30	4.4	95.6	0.0	0.24	0.28	0.87	0.86	1.90	25255	3088	39	0	81	0	0	logfile
✔	7V7Q	31778	2024-02-19	2021-08-21	2.8	3.73	—	3.2	0.004	0.58	0.0	0.05	14.00	0.00	2.148	6.16	0.00	3.9	96.0	0.1	0.05	0.89	0.87	2.71	3.2	0.003	0.56	0.0	0.04	14.11	0.00	2.190	5.86	1.00	4.3	95.6	0.1	0.32	1.13	0.88	0.87	2.40	25371	3096	42	0	84	0	0	logfile
✔	7V7H	31771	2024-02-25	2021-08-21	3.2	4.02	—	3.7	0.004	0.62	0.0	0.05	14.69	0.00	2.162	7.22	0.00	4.2	95.7	0.1	-0.31	0.85	0.85	1.93	3.7	0.005	0.65	1.0	0.05	14.33	0.00	2.095	7.76	1.18	4.6	95.3	0.0	-0.17	1.14	0.85	0.85	1.87	50949	6209	84	0	174	0	0	logfile
✔	7RX4	24724	2024-02-15	2021-08-21	3.8	3.99	—	4.0	0.003	0.49	0.0	0.04	13.38	0.00	1.928	12.86	0.00	0.0	100.0	0.0	6.26	0.60	0.78	1.41	3.9	0.003	0.51	0.0	0.04	16.86	0.00	2.341	5.40	3.97	0.0	100.0	0.0	6.10	0.47	0.61	0.80	0.95	13560	1740	60	0	0	0	0	logfile
✔	7RX5	24725	2024-02-14	2021-08-21	3.4	3.65	—	3.6	0.002	0.25	0.0	0.03	11.98	0.00	2.288	5.05	0.00	0.0	100.0	0.0	4.54	0.70	0.85	3.58	3.6	0.002	0.33	0.0	0.03	13.43	0.00	2.264	5.87	0.00	0.0	100.0	0.0	5.24	0.23	0.71	0.87	2.92	9120	1160	40	0	0	0	0	logfile
✔	7V6N	31743	2024-02-22	2021-08-20	3.99	2.98	—	3.3	0.013	1.54	22.0	0.11	13.59	0.00	1.225	8.65	8.11	4.0	94.9	1.1	1.46	0.71	0.48	0.48	2.9	0.004	0.79	0.0	0.04	14.80	0.00	2.058	18.41	3.09	8.1	91.6	0.3	-1.35	1.51	0.78	0.62	1.00	34448	4663	9	0	0	0	0	logfile
✔	7V6o	31744	2024-02-22	2021-08-20	4.56	4.27	—	3.8	0.013	1.54	24.0	0.11	13.45	0.00	1.712	7.94	7.18	4.0	95.1	0.9	1.49	0.81	0.61	—	3.6	0.004	0.80	0.0	0.05	12.32	0.00	2.062	19.88	0.00	8.5	91.3	0.3	-1.02	1.43	0.86	0.73	—	34816	4739	9	0	0	0	0	logfile
✔	7V6A	31740	2024-02-15	2021-08-20	3.6	2.46	—	2.1	0.004	0.71	0.0	0.05	14.08	0.00	2.113	14.17	0.00	4.4	95.6	0.0	-1.88	0.71	0.70	2.85	2.0	0.003	0.70	0.0	0.04	16.45	0.00	2.163	14.93	3.67	4.2	95.8	0.0	-1.04	0.46	0.71	0.70	2.30	8584	1122	5	0	1	0	0	logfile
✔	7PiM	13442	2024-02-15	2021-08-20	4.6	5.02	5.18	4.6	0.002	0.41	0.0	0.03	8.31	0.00	1.900	45.64	0.67	2.0	98.0	0.0	2.23	0.81	0.76	—	4.6	0.002	0.52	0.0	0.04	11.82	0.00	1.561	70.94	0.00	2.3	97.7	0.0	0.58	0.98	0.83	0.77	—	11844	1412	12	0	8	0	524	logfile

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