Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7V68	31738	2024-02-15	2021-08-20	3.4	2.57	—	3.3	0.007	0.83	1.0	0.05	12.84	0.02	2.151	16.41	0.00	3.1	96.8	0.1	-0.44	0.71	0.69	1.57	2.1	0.004	0.71	0.0	0.04	15.89	0.00	2.120	18.36	4.92	4.1	95.9	0.0	-0.67	0.49	0.73	0.72	1.44	8577	1122	5	0	2	0	0	logfile
✔	7V6N	31743	2024-02-22	2021-08-20	3.99	2.98	—	3.3	0.013	1.54	22.0	0.11	13.59	0.00	1.225	8.65	8.11	4.0	94.9	1.1	1.46	0.71	0.48	0.48	2.9	0.004	0.79	0.0	0.04	14.80	0.00	2.058	18.41	3.09	8.1	91.6	0.3	-1.35	1.51	0.78	0.62	1.00	34448	4663	9	0	0	0	0	logfile
✔	7RX0	24721	2024-02-14	2021-08-20	3.89	4.63	—	4.5	0.006	0.85	1.0	0.05	15.61	0.00	1.666	29.17	0.00	7.1	92.9	0.0	-2.61	0.60	0.82	0.77	4.5	0.003	0.82	0.0	0.04	16.82	0.00	2.057	19.99	3.33	4.0	96.0	0.0	-0.43	0.79	0.59	0.82	0.34	9673	1182	7	0	83	0	0	logfile
✔	7PiM	13442	2024-02-15	2021-08-20	4.6	5.02	5.18	4.6	0.002	0.41	0.0	0.03	8.31	0.00	1.900	45.64	0.67	2.0	98.0	0.0	2.23	0.81	0.76	—	4.6	0.002	0.52	0.0	0.04	11.82	0.00	1.561	70.94	0.00	2.3	97.7	0.0	0.58	0.98	0.83	0.77	—	11844	1412	12	0	8	0	524	logfile
✔	7V6B	31741	2024-02-15	2021-08-20	3.3	2.81	3.21	3.3	0.012	1.65	3.0	0.09	13.69	0.01	2.312	6.55	5.01	4.3	95.7	0.0	-1.67	0.57	0.72	2.30	3.2	0.003	0.58	0.0	0.04	16.00	0.00	2.228	8.31	2.90	2.5	97.5	0.0	0.82	2.25	0.68	0.80	2.22	13633	1678	2	0	0	0	0	logfile
✔	7V6Z	31754	2024-02-13	2021-08-20	3.64	3.89	—	3.9	0.012	1.67	6.0	0.11	14.34	0.01	2.282	9.81	10.76	3.2	96.5	0.3	1.70	0.64	0.71	1.36	3.8	0.004	0.74	0.0	0.04	14.74	0.00	2.214	12.54	5.38	3.4	96.5	0.1	0.97	1.01	0.64	0.73	1.07	7082	1008	3	0	6	0	0	logfile
✔	7V69	31739	2024-02-15	2021-08-20	3.4	2.24	—	2.0	0.003	0.65	0.0	0.04	12.64	0.00	2.096	13.28	0.00	2.9	97.1	0.0	-2.02	0.68	0.64	2.22	2.0	0.003	0.62	0.0	0.04	15.01	0.00	2.101	14.88	3.58	4.2	95.8	0.0	-0.95	1.13	0.70	0.68	2.06	8539	1122	5	0	0	0	0	logfile
✔	7RWJ	24717	2024-02-14	2021-08-20	3.5	3.71	—	3.7	0.008	1.17	4.0	0.07	16.67	0.01	2.258	9.32	1.35	5.1	94.6	0.3	-3.76	0.78	0.80	2.26	3.7	0.004	0.64	0.0	0.04	16.15	0.00	2.147	7.40	2.12	5.0	94.9	0.2	0.70	0.47	0.78	0.81	2.01	9906	1212	4	0	8	0	0	logfile
✔	7V6A	31740	2024-02-15	2021-08-20	3.6	2.46	—	2.1	0.004	0.71	0.0	0.05	14.08	0.00	2.113	14.17	0.00	4.4	95.6	0.0	-1.88	0.71	0.70	2.85	2.0	0.003	0.70	0.0	0.04	16.45	0.00	2.163	14.93	3.67	4.2	95.8	0.0	-1.04	0.46	0.71	0.70	2.30	8584	1122	5	0	1	0	0	logfile
✔	7RW9	24711	2024-02-14	2021-08-19	3.9	4.54	3.87	4.2	0.003	0.63	0.0	0.04	13.18	0.00	2.140	7.83	0.11	6.4	93.3	0.3	0.44	0.78	0.69	1.28	4.2	0.003	0.65	0.0	0.04	14.81	0.00	2.136	8.82	2.02	5.5	94.2	0.3	1.51	0.54	0.88	0.84	0.85	10365	1456	4	0	0	0	0	logfile
✔	7RWB	24713	2024-02-19	2021-08-19	3.9	4.19	3.83	4.1	0.003	0.53	0.0	0.04	12.89	0.00	2.103	8.14	0.10	4.4	95.5	0.1	0.92	0.72	0.69	1.21	4.1	0.004	0.55	0.0	0.04	14.68	0.00	2.092	9.15	2.34	5.0	95.0	0.0	1.14	0.35	0.74	0.70	0.79	23962	3408	8	0	0	0	0	logfile
✔	7RW8	24710	2024-02-15	2021-08-19	3.5	4.25	3.47	3.8	0.004	0.58	0.0	0.04	13.41	0.00	2.069	5.73	0.00	3.5	96.5	0.0	0.99	0.80	0.72	2.46	3.8	0.003	0.53	0.0	0.04	14.48	0.00	2.101	6.01	1.22	3.3	96.7	0.0	2.20	0.98	0.89	0.85	1.87	12572	1712	4	0	0	0	0	logfile
✔	7RW2	24708	2024-02-21	2021-08-19	3.5	3.76	3.53	3.8	0.005	0.97	9.0	0.07	13.47	0.01	2.254	6.35	0.03	3.6	96.4	0.0	-1.51	0.71	0.70	1.71	3.7	0.003	0.69	0.0	0.05	15.29	0.00	2.106	11.33	2.96	4.3	95.7	0.0	-0.99	1.28	0.74	0.76	1.60	31614	3951	18	0	60	0	0	logfile
✔	7V66	31736	2024-02-22	2021-08-19	1.89	1.85	—	5.2	0.006	1.02	0.0	0.07	12.14	0.01	1.929	1.89	2.07	1.9	98.0	0.0	1.97	0.09	0.05	1.38	4.1	0.006	1.44	8.0	0.04	15.60	0.01	2.233	16.30	1.64	4.1	95.9	0.0	3.25	1.24	0.14	0.12	-0.77	33216	4128	24	0	0	0	0	logfile
✔	7RW6	24709	2024-02-15	2021-08-19	2.55	2.65	—	2.8	0.003	0.55	0.0	0.04	11.59	0.00	2.167	9.15	0.00	5.9	94.1	0.0	0.17	0.86	0.86	4.11	2.8	0.003	0.63	0.0	0.04	14.60	0.00	2.045	10.08	1.15	5.9	94.1	0.0	0.28	0.39	0.87	0.88	3.73	13130	1634	6	0	2	0	0	logfile
✔	7Pii	13437	2024-02-15	2021-08-19	2.68	2.39	—	2.7	0.010	0.78	0.0	0.05	28.13	0.00	2.229	8.23	0.31	4.0	96.0	0.0	-0.89	0.51	0.38	3.69	2.6	0.004	0.66	0.0	0.04	28.59	0.00	2.171	7.45	2.18	2.9	97.1	0.0	1.82	0.97	0.81	0.88	3.46	11192	779	12	245	0	0	0	logfile
✔	7PHR	13427	2024-02-15	2021-08-18	3.08	3.38	—	3.4	0.006	0.77	0.0	0.05	12.73	0.00	2.475	5.22	0.08	2.6	97.4	0.0	-0.08	0.66	0.79	3.56	3.4	0.004	0.53	0.0	0.04	14.60	0.00	2.225	6.86	2.41	2.8	97.2	0.0	0.50	0.39	0.67	0.82	3.48	11511	1443	14	0	6	0	0	logfile
✔	7V61	31732	2024-02-20	2021-08-18	3.2	3.38	—	3.2	0.007	0.97	2.0	0.07	15.53	0.01	1.986	21.56	5.08	9.3	88.8	1.9	-5.19	0.70	0.77	2.16	3.2	0.003	0.72	0.0	0.04	15.54	0.00	2.046	11.31	1.78	7.4	92.4	0.2	-0.49	1.27	0.75	0.87	2.04	29076	3586	28	0	40	4	0	logfile
✔	7PHM	13420	2024-02-16	2021-08-17	2.2	2.20	—	2.2	0.009	0.91	0.0	0.06	9.20	0.01	2.260	2.25	0.00	1.5	98.5	0.0	-1.09	0.76	0.87	6.46	2.2	0.003	0.57	0.0	0.04	13.91	0.00	2.182	5.17	1.57	1.1	98.9	0.0	2.02	1.90	0.77	0.88	5.83	121560	15840	60	0	0	0	0	logfile
✔	7V5C	31722	2024-02-14	2021-08-17	3.2	3.83	—	3.7	0.009	0.63	0.0	0.04	13.83	0.00	1.766	28.98	0.00	6.7	93.3	0.0	-6.06	0.66	0.86	2.72	3.7	0.003	0.68	0.0	0.04	15.99	0.00	1.875	5.18	3.83	3.6	96.4	0.0	-0.86	0.95	0.65	0.86	2.46	8916	1144	4	0	6	0	0	logfile

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