Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7PHG	13415	2024-02-13	2021-08-17	4.3	4.13	—	4.0	0.003	0.68	0.0	0.04	13.71	0.00	1.916	18.40	0.00	11.9	88.1	0.0	-3.68	0.78	0.67	—	4.0	0.004	0.69	0.0	0.04	13.40	0.00	1.919	21.02	0.00	13.1	86.9	0.0	-3.80	1.25	0.78	0.67	—	6469	427	3	0	0	0	3160	logfile
✔	7RUG	24705	2024-02-13	2021-08-17	4.7	5.03	4.07	4.8	0.003	0.50	0.0	0.04	12.58	0.00	1.920	12.90	0.00	1.6	98.4	0.0	3.26	0.59	0.66	—	4.8	0.002	0.47	0.0	0.03	13.55	0.00	1.974	14.01	0.00	1.6	98.4	0.0	3.04	1.61	0.60	0.66	—	5429	331	2	0	0	0	2728	logfile
✔	7V5D	31723	2024-02-14	2021-08-17	3.4	4.15	—	4.0	0.010	0.94	0.0	0.05	16.06	0.01	2.215	8.62	0.63	8.5	91.5	0.0	-2.76	0.65	0.81	1.75	4.0	0.003	0.60	0.0	0.04	17.30	0.00	2.235	8.73	3.79	4.5	95.5	0.0	0.15	0.93	0.65	0.81	1.15	8822	1140	3	0	1	0	0	logfile
✔	7V5K	31726	2024-02-23	2021-08-17	2.8	3.21	—	2.5	0.010	1.25	32.0	0.08	13.50	0.01	1.043	15.75	2.76	8.7	89.9	1.4	-1.38	0.85	0.77	1.83	2.4	0.003	0.77	1.0	0.05	15.24	0.00	2.023	14.22	1.85	9.7	90.1	0.2	-1.16	0.74	0.88	0.83	1.68	36369	4725	9	0	0	0	0	logfile
✔	7PHM	13420	2024-02-16	2021-08-17	2.2	2.20	—	2.2	0.009	0.91	0.0	0.06	9.20	0.01	2.260	2.25	0.00	1.5	98.5	0.0	-1.09	0.76	0.87	6.46	2.2	0.003	0.57	0.0	0.04	13.91	0.00	2.182	5.17	1.57	1.1	98.9	0.0	2.02	1.90	0.77	0.88	5.83	121560	15840	60	0	0	0	0	logfile
✔	7V5C	31722	2024-02-14	2021-08-17	3.2	3.83	—	3.7	0.009	0.63	0.0	0.04	13.83	0.00	1.766	28.98	0.00	6.7	93.3	0.0	-6.06	0.66	0.86	2.72	3.7	0.003	0.68	0.0	0.04	15.99	0.00	1.875	5.18	3.83	3.6	96.4	0.0	-0.86	0.95	0.65	0.86	2.46	8916	1144	4	0	6	0	0	logfile
✔	7V5M	31727	2024-02-24	2021-08-17	3.88	4.12	—	3.8	0.002	0.61	0.0	0.04	7.67	0.00	2.155	9.48	0.00	3.0	96.9	0.1	-2.87	0.80	0.69	1.03	3.8	0.006	0.86	2.0	0.05	14.23	0.00	1.335	19.55	2.98	2.9	97.1	0.0	0.15	1.81	0.90	0.85	2.11	45340	6198	28	0	0	0	0	logfile
✔	7V5J	31725	2024-02-23	2021-08-17	2.8	3.15	—	2.5	0.013	1.55	32.0	0.11	14.16	0.00	1.014	9.67	9.26	4.6	94.3	1.0	1.20	0.80	0.66	1.10	2.6	0.007	0.95	0.0	0.05	15.60	0.01	1.974	19.72	3.24	8.6	91.0	0.5	-1.04	1.05	0.86	0.79	1.89	36189	4707	9	0	0	0	0	logfile
✔	7RU0	24692	2024-02-17	2021-08-16	4.3	3.77	—	4.2	0.005	1.12	0.0	0.06	14.47	0.01	2.146	8.30	0.00	6.9	93.1	0.0	-3.06	0.48	0.48	—	4.2	0.004	0.89	0.0	0.05	14.43	0.01	2.123	12.33	0.00	6.5	93.5	0.0	-1.22	1.50	0.62	0.63	—	12284	1536	8	0	4	0	0	logfile
✔	7RU1	24693	2024-02-20	2021-08-16	2.8	3.31	2.92	3.2	0.021	1.78	0.0	0.12	10.14	0.01	2.402	0.79	0.00	3.0	97.0	0.0	0.58	0.80	0.82	5.05	3.2	0.003	0.61	0.0	0.04	14.03	0.00	2.184	5.17	1.46	3.7	96.2	0.1	0.25	1.21	0.78	0.82	4.35	26493	3294	18	0	54	0	0	logfile
✔	7RU8	24699	2024-02-13	2021-08-16	3.8	4.10	3.80	3.9	0.022	1.87	0.0	0.12	10.39	0.01	2.356	1.12	0.00	6.1	93.9	0.0	-0.23	0.77	0.72	2.53	3.9	0.004	0.77	0.0	0.05	14.85	0.00	2.120	14.98	3.78	8.6	91.4	0.0	-1.34	1.47	0.78	0.75	1.17	3198	405	5	0	3	0	0	logfile
✔	7RU4	24696	2024-02-13	2021-08-16	3.3	3.64	3.27	3.4	0.023	1.89	0.0	0.11	9.65	0.01	2.362	0.60	0.55	3.1	96.9	0.0	0.06	0.75	0.80	3.98	3.5	0.003	0.73	0.0	0.05	14.86	0.00	2.208	9.00	3.56	6.7	93.3	0.0	-0.67	1.35	0.76	0.82	2.33	3382	428	5	0	4	0	0	logfile
✔	7RU3	24695	2024-02-20	2021-08-16	3.3	4.03	3.38	3.7	0.022	1.85	0.0	0.12	10.46	0.01	2.056	1.17	0.32	3.2	96.8	0.0	0.61	0.84	0.81	2.55	3.7	0.004	0.69	0.0	0.04	13.16	0.00	2.158	10.15	1.20	4.1	95.8	0.1	0.28	0.73	0.85	0.84	2.09	28157	3537	16	0	42	0	0	logfile
✔	7RU6	24698	2024-02-13	2021-08-16	4.4	4.33	3.79	4.2	0.003	0.59	0.0	0.04	15.25	0.00	2.027	10.32	0.00	0.3	99.7	0.0	3.15	0.71	0.67	—	4.2	0.003	0.52	0.0	0.03	12.86	0.00	2.107	6.63	0.00	1.6	98.4	0.0	3.90	0.73	0.74	0.70	—	5426	331	2	0	0	0	2725	logfile
✔	7RUA	24701	2024-02-15	2021-08-16	3.4	3.27	3.30	3.3	0.003	0.57	0.0	0.04	14.91	0.01	1.920	7.52	0.00	2.2	97.8	0.0	1.77	0.65	0.76	2.85	3.3	0.004	0.57	0.0	0.04	16.88	0.01	2.085	9.64	3.21	2.2	97.8	0.0	1.57	1.28	0.75	0.85	2.78	11603	1448	10	0	5	0	0	logfile
✔	7RU9	24700	2024-02-15	2021-08-16	3.3	2.93	3.26	3.2	0.003	0.59	0.0	0.07	14.94	0.01	1.899	7.92	0.00	2.9	97.1	0.0	1.87	0.65	0.78	2.93	3.2	0.004	0.57	0.0	0.04	16.44	0.00	1.912	7.83	1.26	3.0	97.0	0.0	1.59	0.55	0.73	0.84	2.70	11595	1448	10	0	5	0	0	logfile
✔	7RUC	24702	2024-02-15	2021-08-16	3.6	3.41	3.38	3.4	0.004	0.53	0.0	0.04	14.65	0.00	1.772	7.64	0.00	4.6	95.4	0.0	1.89	0.68	0.76	2.48	3.4	0.003	0.58	0.0	0.04	16.51	0.00	1.925	9.04	2.87	2.9	97.1	0.0	1.65	0.94	0.76	0.83	2.33	10766	1344	9	0	5	0	0	logfile
✔	7RU2	24694	2024-02-20	2021-08-16	3.0	3.60	3.09	3.4	0.022	1.79	0.0	0.12	9.89	0.01	2.391	0.63	0.14	3.0	97.0	0.0	0.56	0.84	0.83	4.15	3.4	0.003	0.60	0.0	0.04	12.89	0.00	2.194	4.91	1.25	4.2	95.8	0.1	0.29	1.58	0.85	0.85	3.49	26646	3301	20	0	62	0	0	logfile
✔	7PGQ	13392	2024-02-21	2021-08-15	3.5	3.89	3.50	3.6	0.003	0.45	0.0	0.03	10.68	0.00	1.905	3.80	0.91	1.2	98.8	0.0	-0.24	0.81	0.79	1.38	3.6	0.003	0.52	0.0	0.03	12.89	0.00	2.006	5.48	1.42	3.6	96.3	0.1	1.09	0.71	0.81	0.79	1.34	31508	1970	3	0	2	0	15807	logfile
✔	7PGS	13394	2024-02-16	2021-08-15	3.4	3.61	3.34	3.4	0.002	0.40	0.0	0.03	10.77	0.00	1.972	3.57	0.66	1.2	98.8	0.0	-0.33	0.80	0.79	2.03	3.4	0.004	0.55	0.0	0.04	13.30	0.00	1.884	5.95	1.25	3.6	96.3	0.0	1.35	0.72	0.82	0.82	1.35	67202	4210	2	0	1	0	33807	logfile

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