Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7RTV	24690	2024-02-13	2021-08-15	3.96	4.06	—	4.1	0.004	0.76	0.0	0.05	24.99	0.00	2.207	14.04	0.32	2.8	97.2	0.0	3.61	0.41	0.63	0.10	4.1	0.003	0.92	0.0	0.05	17.35	0.00	2.201	16.81	5.19	2.8	97.2	0.0	3.26	0.50	0.42	0.64	-0.08	2881	366	3	0	6	0	0	logfile
✔	7PGS	13394	2024-02-16	2021-08-15	3.4	3.61	3.34	3.4	0.002	0.40	0.0	0.03	10.77	0.00	1.972	3.57	0.66	1.2	98.8	0.0	-0.33	0.80	0.79	2.03	3.4	0.004	0.55	0.0	0.04	13.30	0.00	1.884	5.95	1.25	3.6	96.3	0.0	1.35	0.72	0.82	0.82	1.35	67202	4210	2	0	1	0	33807	logfile
✔	7RTU	24689	2024-02-13	2021-08-15	3.89	4.06	—	4.1	0.003	0.61	0.0	0.04	20.84	0.00	2.175	7.11	0.16	3.1	96.9	0.0	4.32	0.55	0.69	0.15	4.1	0.004	0.61	0.0	0.04	16.11	0.00	2.177	6.86	2.83	2.8	97.2	0.0	4.01	0.32	0.62	0.73	0.38	5962	754	6	0	12	0	0	logfile
✔	7RTW	24691	2024-02-13	2021-08-15	3.23	3.74	—	3.7	0.004	0.68	0.0	0.05	20.75	0.00	2.213	9.12	0.00	3.9	96.1	0.0	2.01	0.60	0.70	0.84	3.7	0.003	0.64	0.0	0.04	16.30	0.00	2.284	8.15	4.08	3.5	96.5	0.0	2.60	0.41	0.60	0.72	1.02	5644	701	8	0	17	0	0	logfile
✔	7PGQ	13392	2024-02-21	2021-08-15	3.5	3.89	3.50	3.6	0.003	0.45	0.0	0.03	10.68	0.00	1.905	3.80	0.91	1.2	98.8	0.0	-0.24	0.81	0.79	1.38	3.6	0.003	0.52	0.0	0.03	12.89	0.00	2.006	5.48	1.42	3.6	96.3	0.1	1.09	0.71	0.81	0.79	1.34	31508	1970	3	0	2	0	15807	logfile
✔	7RTN	24684	2024-02-13	2021-08-13	3.4	3.47	—	3.5	0.004	0.63	0.0	0.04	14.58	0.00	2.298	6.03	0.00	6.1	93.9	0.0	0.60	0.31	0.74	3.40	3.5	0.002	0.54	0.0	0.04	16.48	0.00	2.169	7.69	3.06	4.5	95.5	0.0	1.51	0.35	0.31	0.78	2.75	6018	810	3	0	0	0	0	logfile
✔	7V4L	31715	2024-02-14	2021-08-13	3.4	3.80	—	3.8	0.005	0.82	1.0	0.06	15.20	0.01	2.102	18.13	3.71	8.8	90.6	0.5	-2.60	0.55	0.55	1.34	3.8	0.003	0.71	0.0	0.05	16.01	0.01	2.157	17.26	2.44	7.4	92.5	0.1	-2.68	0.73	0.59	0.62	1.35	9345	1190	5	0	0	0	0	logfile
✔	7V4i	31712	2024-02-20	2021-08-13	3.3	3.91	—	3.9	0.003	0.58	0.0	0.04	14.20	0.01	2.079	10.39	0.00	5.5	94.5	0.0	-1.15	0.70	0.74	1.97	3.9	0.003	0.61	0.0	0.04	15.97	0.01	2.088	12.04	2.32	5.6	94.4	0.0	-0.87	0.35	0.73	0.76	1.64	27680	3560	10	0	0	0	0	logfile
✔	7V4J	31713	2024-02-14	2021-08-13	3.5	3.64	—	3.8	0.003	0.67	0.0	0.05	13.95	0.01	2.092	19.96	0.00	8.2	91.8	0.0	-1.60	0.61	0.52	1.21	3.8	0.003	0.76	0.0	0.05	16.53	0.01	2.080	22.59	1.98	6.7	93.3	0.0	-1.65	0.52	0.63	0.58	1.23	9850	1275	5	0	0	0	0	logfile
✔	7PG9	13389	2024-02-24	2021-08-13	3.7	4.05	—	3.7	0.003	0.63	0.0	0.04	7.81	0.00	2.144	8.56	0.02	2.9	97.0	0.1	-2.89	0.85	0.79	2.74	3.7	0.004	0.77	0.0	0.04	14.02	0.00	2.147	11.98	2.20	2.8	97.2	0.0	0.75	0.90	0.89	0.86	2.38	45326	6195	28	0	0	0	0	logfile
✔	7RTF	24681	2024-02-15	2021-08-13	2.9	2.86	—	3.0	0.009	1.35	0.0	0.05	21.04	0.01	2.280	5.21	1.41	7.2	92.8	0.0	-0.52	0.67	0.80	2.92	3.0	0.003	0.64	0.0	0.04	16.82	0.00	2.216	6.61	1.71	5.9	94.1	0.0	1.47	0.33	0.69	0.82	2.34	13460	1580	8	0	52	0	0	logfile
✔	7RTJ	24682	2024-02-17	2021-08-13	3.8	3.82	—	3.8	0.008	1.02	0.0	0.05	20.09	0.01	2.224	9.50	1.17	5.6	94.4	0.0	0.00	0.65	0.75	1.48	3.8	0.003	0.70	0.0	0.04	17.76	0.00	2.212	11.80	3.73	6.0	94.0	0.0	0.73	1.51	0.63	0.78	1.59	13352	1592	8	0	36	0	0	logfile
✔	7RTo	24685	2024-02-13	2021-08-13	3.8	3.83	—	3.8	0.004	0.82	0.0	0.05	14.32	0.00	2.200	8.55	0.16	5.6	94.4	0.0	1.09	0.32	0.76	2.41	3.8	0.003	0.64	0.0	0.04	16.64	0.00	2.244	7.52	2.95	4.9	95.1	0.0	1.63	0.52	0.33	0.78	1.65	6607	888	3	0	0	0	0	logfile
✔	7V4H	31711	2024-02-20	2021-08-13	2.9	3.14	—	3.2	0.004	0.59	0.0	0.05	13.65	0.01	2.083	7.28	0.00	3.6	96.4	0.0	-1.11	0.67	0.81	3.76	3.2	0.002	0.54	0.0	0.04	15.72	0.00	2.146	7.03	2.36	3.1	96.9	0.0	-0.28	0.31	0.56	0.79	3.49	27340	3520	10	0	0	0	0	logfile
✔	7RTM	24683	2024-02-14	2021-08-13	3.4	3.54	3.61	20.0	0.031	3.05	44.0	0.18	16.56	0.03	1.051	1.40	2.80	6.8	93.0	0.3	-1.12	0.10	0.04	0.21	3.5	0.003	0.83	0.0	0.04	15.98	0.00	2.134	10.79	2.20	5.4	94.6	0.1	0.27	4.69	0.66	0.78	1.34	9161	1142	6	0	12	0	0	logfile
✔	7PFV	13381	2024-02-16	2021-08-12	4.4	7.43	—	4.1	0.006	0.86	0.0	0.05	30.43	0.01	2.249	7.20	0.00	1.2	98.8	0.0	0.36	0.91	0.85	—	4.1	0.005	0.64	0.0	0.04	29.81	0.00	2.172	22.11	0.00	2.3	97.7	0.0	2.09	0.62	0.91	0.86	—	13880	843	11	354	0	0	0	logfile
✔	7PFX	13383	2024-02-16	2021-08-12	4.3	7.46	—	4.0	0.006	0.88	0.0	0.05	30.29	0.01	2.234	6.11	0.00	1.3	98.7	0.0	0.30	0.91	0.85	—	4.0	0.005	0.66	0.0	0.04	30.16	0.00	2.097	20.30	0.00	2.5	97.5	0.0	1.99	1.56	0.91	0.86	—	13880	843	11	354	0	0	0	logfile
✔	7V47	31702	2024-02-13	2021-08-12	2.8	2.80	—	3.0	0.007	0.78	0.0	0.06	12.91	0.00	2.567	6.32	0.00	18.6	81.4	0.0	-5.86	0.44	0.80	6.31	3.0	0.004	0.69	0.0	0.06	17.28	0.00	2.415	6.71	7.32	18.1	81.9	0.0	-4.31	0.34	0.44	0.80	6.12	2484	366	6	0	0	0	0	logfile
✔	7V48	31703	2024-02-13	2021-08-12	3.0	2.27	—	3.3	0.002	0.48	0.0	0.05	12.91	0.00	2.295	8.64	0.00	9.8	90.2	0.0	-5.61	0.37	0.75	4.10	3.3	0.004	0.65	0.0	0.05	14.15	0.00	2.253	4.89	2.65	21.3	78.7	0.0	-4.60	0.41	0.39	0.76	4.74	2598	378	6	0	0	0	0	logfile
✔	7RTB	24680	2024-02-14	2021-08-12	2.14	2.32	2.23	2.3	0.003	0.57	0.0	0.04	14.48	0.00	2.277	5.37	0.77	1.6	98.4	0.0	-0.80	0.64	0.69	3.38	2.3	0.005	0.66	0.0	0.04	16.95	0.00	2.201	5.31	2.99	3.2	96.8	0.0	0.82	0.67	0.68	0.83	3.90	8972	1169	7	0	0	1	0	logfile

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