Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8T57	41044	2024-02-14	2023-06-12	2.7	2.45	2.65	3.0	0.027	1.65	0.0	0.12	11.19	0.01	2.385	1.27	0.00	0.8	99.2	0.0	0.77	0.80	0.82	4.03	3.0	0.003	0.59	0.0	0.04	14.08	0.00	2.122	8.18	1.66	1.2	98.8	0.0	1.48	0.58	0.76	0.82	3.03	8466	1008	4	0	20	0	0	logfile
✔	8PDQ	17618	2024-02-22	2023-06-12	3.1	3.25	3.11	3.2	0.004	0.57	0.0	0.04	15.29	0.00	0.235	15.65	0.00	1.9	98.1	0.0	0.16	0.77	0.82	2.60	3.2	0.004	0.54	0.0	0.04	16.40	0.00	2.151	10.61	1.75	2.5	97.5	0.0	1.46	0.38	0.78	0.83	2.34	33176	4070	33	77	0	0	0	logfile
✔	8PDS	17620	2024-02-13	2023-06-12	2.9	3.01	2.88	3.0	0.004	0.58	0.0	0.04	15.09	0.00	2.230	7.92	0.16	1.6	98.4	0.0	-0.16	0.68	0.83	3.17	3.0	0.003	0.53	0.0	0.04	17.00	0.00	2.191	7.92	2.84	1.2	98.8	0.0	1.05	0.38	0.68	0.84	2.60	6056	744	5	14	0	0	0	logfile
✔	8PD8	17605	2024-02-16	2023-06-12	3.3	2.43	3.21	2.1	0.005	0.85	0.0	0.05	13.01	0.01	2.240	6.27	0.00	2.4	97.6	0.0	0.77	0.68	0.71	1.97	2.1	0.003	0.59	0.0	0.04	15.81	0.00	2.070	7.03	2.23	1.2	98.8	0.0	2.10	1.20	0.77	0.78	1.60	16122	2036	4	0	2	0	0	logfile
✔	8PD9	17607	2024-02-13	2023-06-12	3.6	2.49	3.49	2.3	0.005	0.73	0.0	0.04	13.44	0.01	2.197	5.39	0.11	2.1	97.9	0.0	2.01	0.64	0.68	1.57	2.2	0.003	0.59	0.0	0.04	16.22	0.00	2.180	6.48	2.16	1.5	98.5	0.0	2.06	1.90	0.73	0.75	1.83	8107	1024	2	0	1	0	0	logfile
✔	8JPJ	36481	2024-02-15	2023-06-12	3.5	3.22	3.01	3.3	0.003	0.58	0.0	0.04	13.48	0.00	2.279	5.13	0.00	3.1	96.9	0.0	1.48	0.51	0.72	2.26	3.3	0.002	0.54	0.0	0.04	16.01	0.00	2.196	5.82	1.91	3.0	96.8	0.1	1.76	1.70	0.71	0.87	2.06	11448	1466	4	0	4	0	0	logfile
✔	8PDo	17616	2024-02-13	2023-06-12	3.1	3.28	3.06	3.3	0.006	0.66	0.0	0.04	15.62	0.00	2.068	8.31	0.00	1.9	98.1	0.0	0.19	0.60	0.81	3.39	3.3	0.004	0.49	0.0	0.04	16.82	0.00	2.126	8.31	0.84	1.6	98.4	0.0	1.27	0.34	0.59	0.82	2.20	5722	702	3	14	0	0	0	logfile
✔	8PDN	17615	2024-02-22	2023-06-12	4.7	4.94	4.72	4.7	0.007	0.66	0.0	0.04	15.88	0.00	0.984	15.88	0.00	1.5	98.5	0.0	0.42	0.64	0.57	—	4.7	0.004	0.81	0.0	0.04	15.86	0.01	1.799	20.03	0.00	1.5	98.5	0.0	0.61	3.80	0.70	0.66	—	33228	4068	24	84	0	0	0	logfile
✔	8PDR	17619	2024-02-21	2023-06-12	4.0	4.33	4.07	4.1	0.005	0.61	0.0	0.04	14.93	0.00	0.603	14.55	0.00	1.2	98.8	0.0	0.34	0.63	0.53	—	4.1	0.003	0.68	0.0	0.04	16.92	0.00	2.029	15.31	1.76	2.5	97.5	0.0	1.38	1.88	0.75	0.73	—	32142	3938	33	77	0	0	0	logfile
✔	8JPR	36487	2024-02-15	2023-06-12	3.4	3.63	3.40	3.7	0.003	0.56	0.0	0.04	13.51	0.00	2.111	6.61	0.00	2.2	97.8	0.0	1.04	0.69	0.82	2.53	3.7	0.003	0.57	0.0	0.04	15.33	0.00	2.071	8.01	1.37	2.8	97.1	0.1	1.38	0.66	0.66	0.88	1.92	11396	1460	4	0	8	0	0	logfile
✔	8PD3	17599	2024-02-13	2023-06-11	3.3	2.29	3.23	2.1	0.003	0.56	0.0	0.04	13.67	0.00	2.227	4.23	0.00	1.3	98.7	0.0	0.70	0.61	0.78	2.84	2.1	0.003	0.51	0.0	0.04	15.68	0.00	2.163	5.56	2.94	1.5	98.5	0.0	2.38	0.96	0.67	0.81	2.04	8121	1028	1	0	0	0	0	logfile
✔	8PD7	17602	2024-02-13	2023-06-11	3.4	2.32	3.31	2.1	0.003	0.59	0.0	0.04	12.69	0.00	2.276	3.44	0.11	1.5	98.5	0.0	1.39	0.62	0.78	2.65	2.1	0.003	0.54	0.0	0.04	15.85	0.00	2.218	5.92	2.72	2.5	97.5	0.0	2.32	0.99	0.69	0.81	2.03	8121	1028	1	0	0	0	0	logfile
✔	8JPF	36478	2024-02-13	2023-06-11	3.02	3.21	3.41	3.3	0.006	1.76	0.0	0.27	15.61	0.00	2.214	5.45	0.46	2.7	97.3	0.0	2.25	0.48	0.75	2.58	3.3	0.003	0.66	0.0	0.04	16.05	0.00	2.153	8.17	2.75	3.0	97.0	0.0	1.86	0.41	0.45	0.78	2.79	2269	304	3	0	1	0	0	logfile
✔	8PCZ	17596	2024-02-16	2023-06-11	3.21	2.32	3.12	2.1	0.003	0.56	0.0	0.04	12.91	0.00	2.216	5.81	0.23	2.3	97.7	0.0	1.86	0.70	0.75	2.92	2.1	0.003	0.55	0.0	0.04	15.73	0.00	2.222	6.36	2.05	2.3	97.7	0.0	2.53	0.54	0.79	0.80	2.46	16176	2046	2	0	0	0	0	logfile
✔	8PD2	17598	2024-02-14	2023-06-11	3.25	2.29	3.19	2.1	0.004	0.52	0.0	0.04	12.99	0.00	2.322	3.02	0.00	1.4	98.6	0.0	0.72	0.62	0.78	3.03	2.1	0.003	0.52	0.0	0.04	15.84	0.00	2.245	4.80	2.56	1.4	98.6	0.0	2.59	0.97	0.68	0.82	2.36	8270	1047	1	0	0	0	0	logfile
✔	8JPD	36476	2024-02-13	2023-06-11	2.81	3.01	2.83	3.1	0.004	0.61	0.0	0.04	14.35	0.00	2.283	4.50	0.37	2.7	97.3	0.0	0.83	0.68	0.79	3.29	3.0	0.003	0.63	0.0	0.04	17.20	0.00	2.161	8.51	2.24	2.4	97.6	0.0	0.86	1.35	0.69	0.86	3.44	5198	658	2	0	1	0	0	logfile
✔	8PD5	17601	2024-02-13	2023-06-11	3.4	2.30	3.32	2.1	0.003	0.53	0.0	0.04	13.12	0.00	2.148	2.18	0.00	2.2	97.8	0.0	1.83	0.61	0.77	2.43	2.1	0.002	0.48	0.0	0.04	15.95	0.00	2.268	4.48	2.28	1.7	98.3	0.0	2.65	0.49	0.68	0.81	2.00	8093	1024	1	0	0	0	0	logfile
✔	8PBD	17585	2024-02-20	2023-06-09	2.83	3.29	3.26	3.3	0.007	0.52	0.0	0.04	15.39	0.00	2.152	5.21	1.92	6.2	93.5	0.3	-4.28	0.59	0.82	4.13	3.3	0.005	0.60	0.0	0.04	18.32	0.00	2.158	8.81	3.53	2.5	97.5	0.0	0.05	0.59	0.53	0.83	3.13	26366	3254	31	54	30	0	0	logfile
✔	8PBY	17588	2024-02-25	2023-06-09	3.7	4.03	3.80	4.0	0.003	0.56	0.0	0.04	13.88	0.00	1.886	18.49	0.05	8.4	91.4	0.2	-2.20	0.65	0.59	1.00	4.0	0.003	0.60	0.0	0.04	15.69	0.00	1.878	20.46	1.46	8.7	91.0	0.2	-2.31	1.20	0.67	0.62	0.87	33480	2187	2	0	0	0	16474	logfile
✔	8PBL	17586	2024-02-20	2023-06-09	2.87	2.31	2.88	2.6	0.005	0.77	0.0	0.05	15.61	0.01	2.137	12.11	0.18	2.9	97.1	0.0	-0.47	0.53	0.57	1.91	2.3	0.003	0.62	0.0	0.04	17.90	0.00	2.150	12.01	1.48	2.7	97.3	0.0	-0.26	0.86	0.63	0.62	1.82	26261	3171	10	68	3	0	0	logfile

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