Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8PDN	17615	2024-02-22	2023-06-12	4.7	4.94	4.72	4.7	0.007	0.66	0.0	0.04	15.88	0.00	0.984	15.88	0.00	1.5	98.5	0.0	0.42	0.64	0.57	—	4.7	0.004	0.81	0.0	0.04	15.86	0.01	1.799	20.03	0.00	1.5	98.5	0.0	0.61	3.80	0.70	0.66	—	33228	4068	24	84	0	0	0	logfile
✔	8PDo	17616	2024-02-13	2023-06-12	3.1	3.28	3.06	3.3	0.006	0.66	0.0	0.04	15.62	0.00	2.068	8.31	0.00	1.9	98.1	0.0	0.19	0.60	0.81	3.39	3.3	0.004	0.49	0.0	0.04	16.82	0.00	2.126	8.31	0.84	1.6	98.4	0.0	1.27	0.34	0.59	0.82	2.20	5722	702	3	14	0	0	0	logfile
✔	8PDL	17613	2024-02-20	2023-06-12	3.1	3.30	3.16	3.3	0.009	0.83	0.0	0.06	15.94	0.01	0.922	18.38	0.00	1.7	98.3	0.0	0.63	0.73	0.80	1.93	3.3	0.004	0.61	0.0	0.04	16.77	0.00	2.102	10.48	0.97	2.2	97.8	0.0	1.25	0.42	0.74	0.81	2.10	28610	3510	20	70	0	0	0	logfile
✔	8JPJ	36481	2024-02-15	2023-06-12	3.5	3.22	3.01	3.3	0.003	0.58	0.0	0.04	13.48	0.00	2.279	5.13	0.00	3.1	96.9	0.0	1.48	0.51	0.72	2.26	3.3	0.002	0.54	0.0	0.04	16.01	0.00	2.196	5.82	1.91	3.0	96.8	0.1	1.76	1.70	0.71	0.87	2.06	11448	1466	4	0	4	0	0	logfile
✔	8PD9	17607	2024-02-13	2023-06-12	3.6	2.49	3.49	2.3	0.005	0.73	0.0	0.04	13.44	0.01	2.197	5.39	0.11	2.1	97.9	0.0	2.01	0.64	0.68	1.57	2.2	0.003	0.59	0.0	0.04	16.22	0.00	2.180	6.48	2.16	1.5	98.5	0.0	2.06	1.90	0.73	0.75	1.83	8107	1024	2	0	1	0	0	logfile
✔	8T57	41044	2024-02-14	2023-06-12	2.7	2.45	2.65	3.0	0.027	1.65	0.0	0.12	11.19	0.01	2.385	1.27	0.00	0.8	99.2	0.0	0.77	0.80	0.82	4.03	3.0	0.003	0.59	0.0	0.04	14.08	0.00	2.122	8.18	1.66	1.2	98.8	0.0	1.48	0.58	0.76	0.82	3.03	8466	1008	4	0	20	0	0	logfile
✔	8JPR	36487	2024-02-15	2023-06-12	3.4	3.63	3.40	3.7	0.003	0.56	0.0	0.04	13.51	0.00	2.111	6.61	0.00	2.2	97.8	0.0	1.04	0.69	0.82	2.53	3.7	0.003	0.57	0.0	0.04	15.33	0.00	2.071	8.01	1.37	2.8	97.1	0.1	1.38	0.66	0.66	0.88	1.92	11396	1460	4	0	8	0	0	logfile
✔	8PDM	17614	2024-02-21	2023-06-12	3.3	3.51	3.38	3.5	0.006	0.73	0.0	0.05	15.48	0.01	0.279	15.39	0.00	2.0	98.0	0.0	0.75	0.75	0.79	1.66	3.5	0.003	0.59	0.0	0.04	17.31	0.00	2.167	10.45	1.62	2.8	97.2	0.0	1.63	1.22	0.76	0.80	0.86	31471	3861	22	77	0	0	0	logfile
✔	8PDR	17619	2024-02-21	2023-06-12	4.0	4.33	4.07	4.1	0.005	0.61	0.0	0.04	14.93	0.00	0.603	14.55	0.00	1.2	98.8	0.0	0.34	0.63	0.53	—	4.1	0.003	0.68	0.0	0.04	16.92	0.00	2.029	15.31	1.76	2.5	97.5	0.0	1.38	1.88	0.75	0.73	—	32142	3938	33	77	0	0	0	logfile
✔	8T56	41043	2024-02-15	2023-06-12	2.8	2.38	2.74	2.9	0.027	1.66	0.0	0.11	14.22	0.01	2.385	1.27	0.00	0.5	99.5	0.0	0.58	0.84	0.87	4.71	2.9	0.003	0.57	0.0	0.04	15.50	0.00	2.276	4.21	1.88	1.0	99.0	0.0	3.19	0.58	0.81	0.87	3.25	13096	1498	18	0	36	0	0	logfile
✔	8PD2	17598	2024-02-14	2023-06-11	3.25	2.29	3.19	2.1	0.004	0.52	0.0	0.04	12.99	0.00	2.322	3.02	0.00	1.4	98.6	0.0	0.72	0.62	0.78	3.03	2.1	0.003	0.52	0.0	0.04	15.84	0.00	2.245	4.80	2.56	1.4	98.6	0.0	2.59	0.97	0.68	0.82	2.36	8270	1047	1	0	0	0	0	logfile
✔	8PD5	17601	2024-02-13	2023-06-11	3.4	2.30	3.32	2.1	0.003	0.53	0.0	0.04	13.12	0.00	2.148	2.18	0.00	2.2	97.8	0.0	1.83	0.61	0.77	2.43	2.1	0.002	0.48	0.0	0.04	15.95	0.00	2.268	4.48	2.28	1.7	98.3	0.0	2.65	0.49	0.68	0.81	2.00	8093	1024	1	0	0	0	0	logfile
✔	8JPD	36476	2024-02-13	2023-06-11	2.81	3.01	2.83	3.1	0.004	0.61	0.0	0.04	14.35	0.00	2.283	4.50	0.37	2.7	97.3	0.0	0.83	0.68	0.79	3.29	3.0	0.003	0.63	0.0	0.04	17.20	0.00	2.161	8.51	2.24	2.4	97.6	0.0	0.86	1.35	0.69	0.86	3.44	5198	658	2	0	1	0	0	logfile
✔	8PD3	17599	2024-02-13	2023-06-11	3.3	2.29	3.23	2.1	0.003	0.56	0.0	0.04	13.67	0.00	2.227	4.23	0.00	1.3	98.7	0.0	0.70	0.61	0.78	2.84	2.1	0.003	0.51	0.0	0.04	15.68	0.00	2.163	5.56	2.94	1.5	98.5	0.0	2.38	0.96	0.67	0.81	2.04	8121	1028	1	0	0	0	0	logfile
✔	8PD7	17602	2024-02-13	2023-06-11	3.4	2.32	3.31	2.1	0.003	0.59	0.0	0.04	12.69	0.00	2.276	3.44	0.11	1.5	98.5	0.0	1.39	0.62	0.78	2.65	2.1	0.003	0.54	0.0	0.04	15.85	0.00	2.218	5.92	2.72	2.5	97.5	0.0	2.32	0.99	0.69	0.81	2.03	8121	1028	1	0	0	0	0	logfile
✔	8JPF	36478	2024-02-13	2023-06-11	3.02	3.21	3.41	3.3	0.006	1.76	0.0	0.27	15.61	0.00	2.214	5.45	0.46	2.7	97.3	0.0	2.25	0.48	0.75	2.58	3.3	0.003	0.66	0.0	0.04	16.05	0.00	2.153	8.17	2.75	3.0	97.0	0.0	1.86	0.41	0.45	0.78	2.79	2269	304	3	0	1	0	0	logfile
✔	8PCZ	17596	2024-02-16	2023-06-11	3.21	2.32	3.12	2.1	0.003	0.56	0.0	0.04	12.91	0.00	2.216	5.81	0.23	2.3	97.7	0.0	1.86	0.70	0.75	2.92	2.1	0.003	0.55	0.0	0.04	15.73	0.00	2.222	6.36	2.05	2.3	97.7	0.0	2.53	0.54	0.79	0.80	2.46	16176	2046	2	0	0	0	0	logfile
✔	8PBX	17587	2024-02-25	2023-06-09	3.3	3.77	3.44	3.7	0.005	0.59	0.0	0.04	15.13	0.00	1.897	11.63	0.26	6.5	93.4	0.0	-0.66	0.70	0.75	2.64	3.7	0.004	0.56	0.0	0.04	15.69	0.00	1.889	13.28	1.41	7.3	92.7	0.0	-1.09	0.28	0.68	0.75	2.60	33448	2187	2	0	0	0	16455	logfile
✔	8T4S	41039	2024-02-18	2023-06-09	2.6	2.55	—	1.7	0.005	0.70	0.0	0.05	23.99	0.01	1.654	12.19	3.03	4.5	95.1	0.4	-0.03	0.89	0.87	3.39	1.6	0.005	0.65	0.0	0.04	23.46	0.01	1.847	9.17	2.84	4.4	95.3	0.3	0.19	1.11	0.89	0.87	3.30	74894	4895	42	1671	100	4	0	logfile
✔	8PBY	17588	2024-02-25	2023-06-09	3.7	4.03	3.80	4.0	0.003	0.56	0.0	0.04	13.88	0.00	1.886	18.49	0.05	8.4	91.4	0.2	-2.20	0.65	0.59	1.00	4.0	0.003	0.60	0.0	0.04	15.69	0.00	1.878	20.46	1.46	8.7	91.0	0.2	-2.31	1.20	0.67	0.62	0.87	33480	2187	2	0	0	0	16474	logfile

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