Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	8PC6	17595	2024-02-15	2023-06-09	3.04	3.48	3.06	3.1	0.004	0.68	0.0	0.04	28.54	0.01	2.142	7.87	0.13	2.2	97.8	0.0	0.83	0.89	0.83	2.36	3.1	0.004	0.58	0.0	0.03	27.32	0.00	2.154	9.25	0.51	2.5	97.5	0.0	1.36	1.33	0.93	0.92	2.94	13493	939	12	294	0	0	0	logfile
✔	8PC5	17594	2024-02-15	2023-06-09	3.02	3.37	3.06	3.0	0.006	0.79	0.0	0.06	29.26	0.01	2.205	7.09	0.42	1.9	98.1	0.0	1.05	0.90	0.86	3.01	3.0	0.004	0.57	0.0	0.03	27.66	0.00	2.221	7.05	1.26	2.0	98.0	0.0	1.61	1.95	0.93	0.91	2.63	12836	853	11	294	0	0	0	logfile
✔	8T4S	41039	2024-02-18	2023-06-09	2.6	2.55	—	1.7	0.005	0.70	0.0	0.05	23.99	0.01	1.654	12.19	3.03	4.5	95.1	0.4	-0.03	0.89	0.87	3.39	1.6	0.005	0.65	0.0	0.04	23.46	0.01	1.847	9.17	2.84	4.4	95.3	0.3	0.19	1.11	0.89	0.87	3.30	74894	4895	42	1671	100	4	0	logfile
✔	8PBD	17585	2024-02-20	2023-06-09	2.83	3.29	3.26	3.3	0.007	0.52	0.0	0.04	15.39	0.00	2.152	5.21	1.92	6.2	93.5	0.3	-4.28	0.59	0.82	4.13	3.3	0.005	0.60	0.0	0.04	18.32	0.00	2.158	8.81	3.53	2.5	97.5	0.0	0.05	0.59	0.53	0.83	3.13	26366	3254	31	54	30	0	0	logfile
✔	8PB1	17580	2024-02-13	2023-06-08	3.5	3.99	3.47	3.7	0.005	0.86	0.0	0.06	15.49	0.01	2.253	6.71	0.26	3.7	96.3	0.0	-0.98	0.75	0.78	2.11	3.8	0.004	0.65	0.0	0.04	15.56	0.00	2.149	11.74	1.72	5.0	95.0	0.0	-0.39	0.87	0.76	0.80	1.99	6652	829	8	0	8	1	0	logfile
✔	8JoU	36462	2024-02-14	2023-06-08	4.1	6.13	3.95	3.9	0.004	0.83	0.0	0.05	12.09	0.01	0.759	16.82	0.49	7.7	90.4	1.9	-1.54	0.17	0.37	—	3.1	0.003	0.69	0.0	0.04	11.93	0.00	2.055	23.73	0.08	8.5	89.8	1.7	-1.53	1.41	0.23	0.86	—	62425	8135	70	0	590	0	0	logfile
✔	8T3Y	41016	2024-02-15	2023-06-08	3.47	3.65	3.22	3.4	0.004	0.64	0.0	0.04	26.54	0.00	2.284	6.78	1.74	2.8	97.2	0.0	-1.27	0.87	0.87	2.24	3.3	0.005	0.63	0.0	0.04	26.97	0.00	2.165	5.60	2.95	2.8	97.2	0.0	0.93	0.60	0.88	0.90	2.15	13001	886	14	292	4	0	0	logfile
✔	8JoV	36463	2024-02-17	2023-06-08	3.8	3.76	3.78	3.7	0.003	0.70	0.0	0.04	13.80	0.01	2.195	15.09	0.09	4.0	95.6	0.4	0.47	0.57	0.79	1.01	3.7	0.004	0.66	0.0	0.04	16.03	0.00	2.102	15.25	2.57	5.4	94.3	0.3	0.35	0.47	0.58	0.81	0.94	128070	16764	60	0	0	0	0	logfile
✔	8JoL	36459	2024-02-14	2023-06-07	3.0	3.98	2.98	3.4	0.009	1.46	0.0	0.07	18.20	0.01	2.214	35.79	16.43	12.3	86.8	0.8	-4.77	0.56	0.70	0.79	3.4	0.003	0.77	0.0	0.04	16.16	0.00	1.944	9.11	1.65	3.6	96.4	0.0	0.76	2.18	0.62	0.88	1.56	8513	1087	5	0	4	0	0	logfile
✔	8T3W	41015	2024-02-15	2023-06-07	3.25	3.53	3.11	3.3	0.004	0.64	0.0	0.04	26.53	0.00	2.284	6.74	1.74	2.8	97.2	0.0	-1.27	0.88	0.88	2.25	3.3	0.004	0.59	0.0	0.03	27.21	0.00	2.241	5.34	3.75	2.1	97.9	0.0	0.78	0.53	0.90	0.92	2.24	13001	886	14	292	4	0	0	logfile
✔	8T3T	41011	2024-02-15	2023-06-07	3.21	3.55	3.10	3.3	0.004	0.60	0.0	0.04	27.44	0.00	2.202	7.81	0.27	2.9	97.1	0.0	0.21	0.89	0.91	2.14	3.3	0.004	0.55	0.0	0.03	27.35	0.00	2.205	6.15	3.49	2.7	97.3	0.0	1.38	0.23	0.89	0.92	1.43	12991	885	14	292	4	0	0	logfile
✔	8T3Q	41008	2024-02-14	2023-06-07	3.14	3.59	3.25	3.6	0.008	1.15	2.0	0.07	14.66	0.01	2.144	11.89	1.75	4.3	95.6	0.1	-1.14	0.45	0.67	2.95	3.6	0.003	0.61	0.0	0.04	15.71	0.00	2.162	9.56	2.98	4.1	95.9	0.0	0.02	0.96	0.53	0.78	2.90	9035	1159	6	0	1	0	0	logfile
✔	8T3S	41010	2024-02-14	2023-06-07	3.07	3.44	3.18	3.4	0.005	0.75	1.0	0.05	15.22	0.00	2.185	9.29	0.53	2.5	97.5	0.0	0.78	0.63	0.85	2.72	3.4	0.006	0.59	0.0	0.04	15.55	0.00	2.143	9.81	3.42	2.5	97.5	0.0	1.06	0.91	0.61	0.86	3.16	8769	1119	6	0	4	0	0	logfile
✔	8T3V	41013	2024-02-14	2023-06-07	3.39	3.88	3.56	3.9	0.005	0.81	0.0	0.05	15.86	0.01	2.175	11.45	0.44	2.6	97.4	0.0	0.38	0.52	0.64	0.69	3.9	0.004	0.66	0.0	0.04	16.46	0.00	2.080	10.53	3.71	2.9	97.1	0.0	0.85	0.74	0.60	0.83	1.73	8742	1136	6	0	2	0	0	logfile
✔	8T3K	41004	2024-02-18	2023-06-07	3.33	2.44	3.36	3.1	0.008	1.06	0.0	0.05	20.31	0.01	2.225	7.61	0.20	7.2	92.8	0.0	-1.55	0.72	0.67	1.36	3.1	0.003	0.51	0.0	0.04	19.26	0.00	2.084	9.57	2.64	6.9	93.1	0.0	-0.37	0.40	0.74	0.71	1.12	19768	1204	4	0	15	0	9730	logfile
✔	8T2R	40985	2024-02-16	2023-06-06	3.1	3.34	3.14	3.3	0.006	0.96	0.0	0.05	25.03	0.01	2.174	4.24	1.15	3.1	96.3	0.5	-2.13	0.68	0.83	2.96	3.3	0.004	0.65	0.0	0.04	24.64	0.00	2.070	11.32	4.32	4.2	95.3	0.5	0.52	0.38	0.75	0.86	2.95	15063	388	4	552	15	0	0	logfile
✔	8T2S	40986	2024-02-16	2023-06-06	3.0	3.20	3.02	3.2	0.004	0.89	0.0	0.04	24.68	0.01	2.251	3.85	2.04	2.9	97.1	0.0	-2.71	0.64	0.82	3.11	3.2	0.003	0.60	0.0	0.03	24.22	0.00	2.146	9.84	4.37	5.5	94.5	0.0	-0.35	0.35	0.70	0.86	2.35	14998	389	3	551	13	0	0	logfile
✔	8JNJ	36449	2024-02-15	2023-06-06	3.3	3.66	3.37	3.6	0.004	0.49	0.0	0.04	10.55	0.00	2.292	7.26	1.45	1.6	98.4	0.0	-0.38	0.63	0.84	3.60	3.6	0.003	0.56	0.0	0.04	14.14	0.00	2.193	8.65	2.01	1.9	98.1	0.0	1.56	0.95	0.57	0.83	2.46	11736	1516	2	0	0	0	0	logfile
✔	8JNS	36450	2024-02-19	2023-06-06	4.2	5.01	4.21	3.5	0.010	1.52	0.0	0.08	18.70	0.01	1.390	39.59	17.81	12.8	86.4	0.8	-4.88	0.88	0.76	—	3.5	0.002	0.70	0.0	0.04	13.62	0.00	1.945	9.74	0.00	3.5	96.5	0.0	0.66	1.16	0.91	0.85	—	24168	2985	15	0	12	0	0	logfile
✔	8Jo2	36453	2024-02-22	2023-06-06	2.74	2.96	2.83	3.0	0.011	1.06	4.0	0.06	18.63	0.00	2.068	13.99	2.22	6.7	93.3	0.0	-2.09	0.67	0.77	2.16	3.0	0.003	0.62	0.0	0.04	20.06	0.00	2.150	10.11	2.84	3.5	96.5	0.0	0.49	0.81	0.69	0.84	1.86	35368	4163	10	130	0	0	0	logfile

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