Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7RSQ	24677	2024-02-13	2021-08-11	3.8	4.03	3.73	4.1	0.008	0.80	0.0	0.05	12.74	0.00	2.360	4.01	2.88	3.0	97.0	0.0	-0.64	0.63	0.68	1.39	4.1	0.003	0.52	0.0	0.03	15.34	0.00	2.233	2.76	0.96	2.6	97.4	0.0	2.14	1.75	0.64	0.71	1.77	3970	246	1	0	0	0	1958	logfile
✔	7RSN	24675	2024-02-17	2021-08-11	3.49	3.85	3.57	3.9	0.023	1.84	3.0	0.14	13.45	0.01	2.296	0.46	0.00	4.0	95.6	0.4	0.48	0.73	0.82	2.83	3.9	0.005	0.76	0.0	0.05	14.29	0.00	2.136	9.13	2.47	7.5	92.2	0.3	-0.58	3.07	0.71	0.84	2.14	19623	2310	33	0	99	0	0	logfile
✔	7PEo	13355	2024-02-20	2021-08-11	4.37	6.48	—	4.4	0.009	1.63	0.0	0.13	22.19	0.02	2.206	4.00	0.60	2.5	97.5	0.0	-2.52	0.90	0.86	—	4.3	0.002	0.62	0.0	0.04	11.40	0.00	2.092	8.37	0.09	2.6	97.4	0.0	1.95	1.36	0.91	0.89	—	26278	3388	42	0	210	0	0	logfile
✔	7PF4	13367	2024-02-16	2021-08-11	4.0	4.72	—	3.7	0.005	0.89	0.0	0.05	29.72	0.01	2.258	6.44	0.00	2.4	97.6	0.0	-0.80	0.87	0.76	—	3.7	0.005	0.70	0.0	0.04	29.71	0.00	2.075	22.23	2.20	4.0	96.0	0.0	0.98	0.75	0.88	0.79	—	12935	768	10	334	0	0	0	logfile
✔	7PFF	13374	2024-02-16	2021-08-11	4.3	7.61	—	3.8	0.006	0.92	0.0	0.05	30.35	0.01	2.286	8.26	0.00	1.6	98.4	0.0	-0.07	0.90	0.79	—	3.7	0.005	0.72	0.0	0.04	30.99	0.00	2.198	27.46	0.00	3.7	96.3	0.0	0.66	1.83	0.89	0.81	—	12935	768	10	334	0	0	0	logfile
✔	7PFE	13373	2024-02-16	2021-08-11	4.4	5.35	—	3.9	0.007	0.94	0.0	0.05	29.75	0.01	2.264	6.87	0.00	1.5	98.5	0.0	-0.43	0.91	0.85	—	3.9	0.004	0.64	0.0	0.03	29.09	0.00	2.131	16.68	0.00	2.8	97.2	0.0	1.33	1.61	0.91	0.85	—	13880	843	11	354	0	0	0	logfile
✔	7RSi	24672	2024-02-15	2021-08-11	4.9	7.04	5.29	7.8	0.015	1.51	0.0	0.07	12.44	0.01	2.015	5.90	0.00	4.5	94.6	0.9	-0.32	0.82	0.69	—	7.7	0.003	0.57	0.0	0.04	12.93	0.00	1.862	14.47	0.00	6.5	93.5	0.0	-0.14	1.21	0.82	0.68	—	10886	686	2	0	2	0	5400	logfile
✔	7V2W	31669	2024-02-18	2021-08-10	3.2	3.43	—	3.4	0.006	1.08	0.0	0.05	15.89	0.01	2.276	2.96	0.24	7.1	92.9	0.1	-6.70	0.74	0.82	2.09	3.4	0.004	0.66	0.0	0.04	17.24	0.00	2.141	6.20	2.07	6.9	93.1	0.0	-1.65	0.63	0.75	0.83	1.44	21619	2655	5	0	0	0	0	logfile
✔	7V3L	31683	2024-02-23	2021-08-10	3.47	2.97	—	2.8	0.012	1.55	41.0	0.10	14.53	0.01	2.080	14.40	7.18	10.2	87.9	1.9	-1.28	0.73	0.61	1.27	2.8	0.007	0.94	0.0	0.05	15.49	0.01	1.955	19.35	2.49	12.1	87.6	0.3	-1.85	1.40	0.80	0.75	1.54	36238	4710	9	0	0	0	0	logfile
✔	7RRP	24665	2024-02-18	2021-08-10	1.27	1.32	—	1.4	0.003	0.61	0.0	0.04	14.22	0.00	2.007	2.86	0.00	2.4	97.6	0.0	4.01	0.63	0.76	9.05	1.4	0.004	0.66	0.0	0.04	14.32	0.00	2.044	2.00	0.61	1.8	98.2	0.0	3.97	0.06	0.70	0.83	9.05	72254	4128	72	0	278	2496	34080	logfile
✔	7V2o	31658	2024-02-13	2021-08-09	3.5	3.22	3.31	3.0	0.008	1.12	2.0	0.10	23.97	0.00	2.203	6.79	0.18	5.3	94.5	0.2	-0.53	0.81	0.84	2.00	3.0	0.007	0.71	0.0	0.04	23.82	0.01	2.071	11.25	2.41	6.9	93.1	0.1	-0.28	0.36	0.80	0.83	1.94	53005	2624	24	1487	2	0	0	logfile
✔	7RR7	24654	2024-02-19	2021-08-09	3.05	3.60	3.05	3.5	0.005	0.77	2.0	0.05	14.44	0.00	2.201	8.22	0.28	3.1	96.9	0.0	0.40	0.76	0.85	2.89	3.5	0.002	0.53	0.0	0.04	14.27	0.00	2.131	8.22	1.29	2.6	97.4	0.0	0.94	0.33	0.78	0.88	2.40	23734	3061	6	0	27	0	0	logfile
✔	7PEC	13352	2024-02-21	2021-08-09	4.24	4.75	—	4.4	0.002	0.49	0.0	0.04	14.48	0.00	2.238	5.40	4.99	4.6	95.4	0.0	-1.94	0.73	0.78	—	4.4	0.003	0.63	0.0	0.04	13.29	0.00	2.093	10.73	0.00	3.1	96.9	0.0	0.73	0.89	0.74	0.78	—	30911	3822	5	0	57	0	0	logfile
✔	7RR6	24653	2024-02-19	2021-08-09	3.1	3.36	3.18	3.3	0.008	1.21	12.0	0.08	16.03	0.01	2.102	14.14	0.44	5.0	95.0	0.0	-1.19	0.74	0.84	3.06	3.3	0.003	0.55	0.0	0.04	15.58	0.00	2.146	7.75	1.54	2.8	97.2	0.0	0.89	0.95	0.73	0.87	2.64	23821	3063	6	0	35	0	0	logfile
✔	7V2P	31659	2024-02-25	2021-08-09	3.3	3.22	3.17	3.1	0.008	1.09	3.0	0.10	23.04	0.00	2.228	5.61	0.27	6.4	93.4	0.2	-0.50	0.83	0.89	2.28	3.1	0.007	0.70	0.0	0.04	22.86	0.01	2.020	7.96	1.98	7.0	92.9	0.1	-0.13	2.77	0.84	0.90	2.27	51135	2639	24	1394	2	0	0	logfile
✔	7PDZ	13343	2024-02-18	2021-08-09	3.8	3.98	3.69	3.7	0.023	1.96	23.0	0.17	15.06	0.01	1.820	4.89	0.21	5.8	94.2	0.0	-2.08	0.79	0.77	1.78	3.8	0.003	0.74	0.0	0.04	16.04	0.00	1.859	13.51	1.85	3.3	96.7	0.0	0.40	0.98	0.80	0.80	1.57	22185	2800	19	0	21	0	0	logfile
✔	7PEA	13350	2024-02-14	2021-08-09	4.07	4.50	—	4.2	0.002	0.47	0.0	0.04	14.26	0.00	2.239	3.98	4.24	4.7	95.3	0.0	-2.53	0.84	0.72	—	4.2	0.003	0.63	0.0	0.04	13.47	0.00	2.108	10.45	0.02	3.1	96.8	0.0	0.87	1.48	0.86	0.77	—	58252	7222	10	0	114	0	0	logfile
✔	7V2M	31656	2024-02-13	2021-08-09	3.4	3.28	3.35	3.1	0.008	1.15	3.0	0.11	23.60	0.00	2.232	6.24	0.33	6.5	93.2	0.3	-0.70	0.80	0.86	2.18	3.1	0.009	0.83	0.0	0.05	23.68	0.01	2.010	12.74	2.77	8.1	91.8	0.0	-0.75	0.33	0.80	0.87	1.99	55229	2909	25	1486	2	0	0	logfile
✔	7PEB	13351	2024-02-20	2021-08-09	3.67	4.11	—	3.9	0.002	0.52	0.0	0.04	13.93	0.00	2.245	4.52	2.69	5.1	94.9	0.1	-2.66	0.71	0.73	1.45	3.9	0.003	0.68	0.0	0.04	15.58	0.00	2.047	10.88	2.02	3.5	96.5	0.0	0.94	2.12	0.72	0.75	1.16	29140	3611	5	0	57	0	0	logfile
✔	7PE9	13349	2024-02-22	2021-08-09	3.7	4.12	—	3.9	0.003	0.55	0.0	0.04	14.28	0.00	2.250	6.27	1.33	3.7	96.3	0.0	-0.63	0.81	0.81	1.47	3.9	0.003	0.62	0.0	0.04	15.77	0.00	2.168	8.99	2.03	3.6	96.4	0.0	0.85	2.01	0.82	0.83	1.08	31076	4043	8	0	3	0	0	logfile

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