Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7V2L	31655	2024-02-13	2021-08-09	3.3	3.14	3.24	3.1	0.008	1.07	1.0	0.10	23.68	0.00	2.214	5.68	0.09	6.7	93.1	0.2	-0.61	0.78	0.87	2.42	3.1	0.006	0.64	0.0	0.04	23.59	0.00	2.079	8.07	1.73	7.2	92.7	0.1	-0.22	0.26	0.79	0.88	2.07	53410	2621	24	1507	2	0	0	logfile
✔	7V2N	31657	2024-02-25	2021-08-09	3.6	3.38	3.41	3.1	0.008	1.21	2.0	0.11	24.27	0.00	2.085	8.71	0.63	7.0	92.7	0.3	-1.20	0.82	0.84	1.75	3.1	0.005	0.66	0.0	0.04	24.04	0.00	1.964	13.36	3.36	6.7	93.2	0.1	-0.46	0.35	0.81	0.84	1.50	51020	2626	24	1394	2	0	0	logfile
✔	7PDZ	13343	2024-02-18	2021-08-09	3.8	3.98	3.69	3.7	0.023	1.96	23.0	0.17	15.06	0.01	1.820	4.89	0.21	5.8	94.2	0.0	-2.08	0.79	0.77	1.78	3.8	0.003	0.74	0.0	0.04	16.04	0.00	1.859	13.51	1.85	3.3	96.7	0.0	0.40	0.98	0.80	0.80	1.57	22185	2800	19	0	21	0	0	logfile
✔	7RR6	24653	2024-02-19	2021-08-09	3.1	3.36	3.18	3.3	0.008	1.21	12.0	0.08	16.03	0.01	2.102	14.14	0.44	5.0	95.0	0.0	-1.19	0.74	0.84	3.06	3.3	0.003	0.55	0.0	0.04	15.58	0.00	2.146	7.75	1.54	2.8	97.2	0.0	0.89	0.95	0.73	0.87	2.64	23821	3063	6	0	35	0	0	logfile
✔	7V2M	31656	2024-02-13	2021-08-09	3.4	3.28	3.35	3.1	0.008	1.15	3.0	0.11	23.60	0.00	2.232	6.24	0.33	6.5	93.2	0.3	-0.70	0.80	0.86	2.18	3.1	0.009	0.83	0.0	0.05	23.68	0.01	2.010	12.74	2.77	8.1	91.8	0.0	-0.75	0.33	0.80	0.87	1.99	55229	2909	25	1486	2	0	0	logfile
✔	7RR0	24649	2024-02-13	2021-08-08	3.12	3.40	—	3.4	0.004	0.97	0.0	0.06	12.28	0.01	2.327	2.79	0.00	1.4	98.6	0.0	0.12	0.75	0.77	2.73	3.4	0.004	0.74	0.0	0.04	15.98	0.00	2.219	11.01	2.53	4.3	95.7	0.0	0.10	1.25	0.77	0.80	2.95	3297	422	4	0	1	0	0	logfile
✔	7RQY	24640	2024-02-22	2021-08-08	3.04	3.28	—	3.3	0.011	0.94	0.0	0.05	17.88	0.00	2.205	7.95	0.00	2.7	97.3	0.0	-0.70	0.63	0.71	2.87	3.3	0.004	0.55	0.0	0.03	16.56	0.00	2.162	4.68	0.56	3.3	96.7	0.0	0.51	0.45	0.63	0.80	2.21	32052	2100	8	0	16	0	15388	logfile
✔	7RQV	24637	2024-02-22	2021-08-08	3.45	3.65	—	3.6	0.011	0.97	0.0	0.06	18.05	0.01	2.226	7.82	0.00	4.4	95.6	0.0	-0.71	0.63	0.74	2.29	3.7	0.005	0.55	0.0	0.04	15.97	0.00	2.132	7.79	1.03	6.2	93.8	0.0	-0.34	0.43	0.65	0.78	2.29	34298	2320	8	0	22	0	16236	logfile
✔	7RQZ	24641	2024-02-22	2021-08-08	3.32	3.07	—	3.3	0.011	0.96	0.0	0.06	18.59	0.00	2.073	6.78	0.00	4.8	95.2	0.0	0.73	0.59	0.73	1.63	3.3	0.004	0.47	0.0	0.03	17.15	0.00	2.144	5.21	1.02	3.7	96.3	0.0	0.95	0.32	0.60	0.75	1.39	32740	2128	8	0	20	0	15608	logfile
✔	7RQX	24639	2024-02-21	2021-08-08	3.36	3.59	—	3.5	0.012	1.06	0.0	0.06	19.02	0.01	2.227	8.03	0.00	3.4	96.6	0.0	-0.29	0.67	0.75	2.39	3.5	0.002	0.46	0.0	0.03	16.04	0.00	2.042	7.71	1.34	3.9	96.1	0.0	0.92	0.48	0.67	0.80	2.25	30450	2016	8	0	26	0	14344	logfile
✔	7RQU	24636	2024-02-23	2021-08-08	3.05	3.32	—	3.3	0.012	1.15	0.0	0.06	22.09	0.00	2.334	3.79	0.00	3.2	96.8	0.0	1.69	0.63	0.76	2.73	3.3	0.003	0.46	0.0	0.03	15.88	0.00	2.362	3.22	1.38	3.7	96.3	0.0	1.91	0.28	0.64	0.80	2.64	35602	2416	8	0	38	0	16568	logfile
✔	7RQW	24638	2024-02-22	2021-08-08	3.11	3.40	—	3.5	0.011	0.99	0.0	0.06	17.95	0.00	2.042	7.24	0.00	4.4	95.6	0.0	0.31	0.55	0.69	2.95	3.5	0.003	0.46	0.0	0.03	16.96	0.00	1.949	7.74	1.50	3.6	96.4	0.0	1.03	0.37	0.51	0.68	2.77	32984	2128	8	0	20	0	15804	logfile
✔	7V1Z	31631	2024-02-15	2021-08-07	2.98	3.07	—	3.1	0.003	0.58	0.0	0.05	13.83	0.00	2.207	3.78	0.22	2.9	97.1	0.0	1.19	0.66	0.82	2.96	3.0	0.003	0.89	2.0	0.04	16.35	0.01	1.535	5.29	1.63	2.8	97.2	0.0	1.24	0.57	0.69	0.86	2.35	12588	1592	4	0	0	0	0	logfile
✔	7V23	31635	2024-02-21	2021-08-07	2.96	3.30	—	3.2	0.011	1.15	6.0	0.10	15.05	0.01	1.613	19.48	3.68	7.0	92.8	0.2	-1.45	0.70	0.76	1.90	3.2	0.004	0.73	0.0	0.05	15.78	0.00	2.087	12.54	2.20	6.6	93.4	0.0	-0.88	0.86	0.70	0.81	2.29	29633	3774	22	0	48	0	0	logfile
✔	7RQS	24635	2024-02-13	2021-08-07	3.57	2.31	3.59	2.0	0.002	0.54	0.0	0.04	13.38	0.00	2.088	9.87	0.26	7.6	92.4	0.0	-0.91	0.70	0.68	2.53	2.0	0.005	0.67	0.0	0.04	15.58	0.00	1.938	14.01	2.24	10.6	89.3	0.1	-1.30	0.57	0.71	0.70	2.52	7792	1074	1	0	1	0	0	logfile
✔	7V24	31636	2024-02-13	2021-08-07	3.29	3.50	—	3.4	0.006	0.80	0.0	0.05	13.64	0.00	2.164	12.03	0.24	11.3	88.7	0.0	-1.86	0.67	0.83	3.60	3.4	0.004	0.67	0.0	0.04	15.38	0.00	2.177	11.63	3.10	10.4	89.6	0.0	-1.09	0.41	0.67	0.85	3.37	3814	487	3	0	0	0	0	logfile
✔	7V22	31634	2024-02-13	2021-08-07	3.38	3.61	—	3.6	0.003	0.66	0.0	0.04	14.10	0.00	2.236	8.81	0.46	12.1	87.5	0.4	-2.81	0.53	0.77	4.24	3.6	0.004	0.70	0.0	0.05	15.69	0.00	2.168	14.50	1.84	13.4	86.2	0.4	-2.50	0.56	0.53	0.80	3.78	1958	240	1	0	0	0	0	logfile
✔	7V20	31632	2024-02-18	2021-08-07	2.86	3.12	—	3.1	0.006	0.87	0.0	0.06	13.33	0.01	1.992	10.52	0.04	3.7	96.3	0.1	-0.61	0.73	0.79	2.24	3.1	0.007	0.74	0.0	0.05	15.06	0.00	2.076	8.36	3.06	3.7	96.3	0.0	-0.35	1.65	0.76	0.86	2.52	22953	2932	15	0	46	0	0	logfile
✔	7V2A	31639	2024-02-20	2021-08-07	3.4	3.63	—	3.5	0.011	0.96	5.0	0.06	15.62	0.01	1.059	25.66	2.50	9.5	90.2	0.3	-3.95	0.82	0.84	2.51	3.5	0.004	0.65	0.0	0.04	15.84	0.00	2.154	10.34	3.41	5.4	94.5	0.2	-0.76	0.51	0.82	0.85	2.55	28017	3657	12	0	24	0	0	logfile
✔	7V26	31637	2024-02-22	2021-08-07	3.85	3.78	—	3.8	0.003	0.53	0.0	0.04	11.20	0.00	2.234	7.30	0.16	5.3	94.7	0.0	-3.84	0.87	0.77	1.15	3.8	0.003	0.64	0.0	0.04	13.99	0.00	2.169	11.86	2.67	8.0	92.0	0.0	-2.07	1.29	0.88	0.80	1.39	35157	4506	12	0	45	0	0	logfile

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