Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7RQS	24635	2024-02-13	2021-08-07	3.57	2.31	3.59	2.0	0.002	0.54	0.0	0.04	13.38	0.00	2.088	9.87	0.26	7.6	92.4	0.0	-0.91	0.70	0.68	2.53	2.0	0.005	0.67	0.0	0.04	15.58	0.00	1.938	14.01	2.24	10.6	89.3	0.1	-1.30	0.57	0.71	0.70	2.52	7792	1074	1	0	1	0	0	logfile
✔	7V21	31633	2024-02-15	2021-08-07	3.08	3.18	—	3.1	0.004	0.73	0.0	0.05	13.48	0.00	2.266	4.92	0.31	2.6	97.3	0.1	0.95	0.72	0.87	3.52	3.1	0.004	0.54	0.0	0.04	14.98	0.00	2.129	5.85	0.93	2.5	97.5	0.0	1.21	0.40	0.73	0.89	3.47	11903	1505	4	0	0	0	0	logfile
✔	7V22	31634	2024-02-13	2021-08-07	3.38	3.61	—	3.6	0.003	0.66	0.0	0.04	14.10	0.00	2.236	8.81	0.46	12.1	87.5	0.4	-2.81	0.53	0.77	4.24	3.6	0.004	0.70	0.0	0.05	15.69	0.00	2.168	14.50	1.84	13.4	86.2	0.4	-2.50	0.56	0.53	0.80	3.78	1958	240	1	0	0	0	0	logfile
✔	7PDS	13342	2024-02-18	2021-08-06	3.14	2.94	3.06	3.1	0.005	0.68	0.0	0.05	15.19	0.00	1.818	8.20	0.25	4.3	95.7	0.0	-0.79	0.73	0.86	3.97	3.0	0.002	0.46	0.0	0.04	16.33	0.00	1.966	8.78	1.63	3.1	96.9	0.0	-0.32	0.90	0.75	0.88	3.62	22549	2714	13	5	10	0	0	logfile
✔	7V1N	31628	2024-02-17	2021-08-05	3.2	3.33	—	3.2	0.013	1.21	4.0	0.07	19.76	0.01	1.973	28.52	16.75	20.1	78.9	1.0	-5.88	0.65	0.73	1.68	3.3	0.006	0.95	1.0	0.05	18.60	0.00	2.010	16.85	6.31	13.4	86.4	0.2	-3.46	0.57	0.62	0.68	1.88	19156	2403	2	0	0	0	0	logfile
✔	7PDH	13338	2024-02-13	2021-08-05	4.0	3.51	—	3.2	0.003	0.70	0.0	0.04	14.16	0.00	2.169	14.32	0.00	5.8	94.2	0.0	-1.07	0.79	0.69	—	3.2	0.002	0.69	0.0	0.04	16.53	0.00	2.198	13.98	2.08	6.2	93.8	0.0	-0.70	0.86	0.79	0.70	—	4516	577	2	0	0	0	0	logfile
✔	7PDD	13334	2024-02-13	2021-08-05	4.2	4.47	—	4.3	0.004	0.75	0.0	0.04	14.38	0.00	2.092	20.92	0.00	7.1	92.9	0.0	-4.11	0.79	0.75	—	4.3	0.003	0.73	0.0	0.05	13.76	0.00	2.144	16.89	0.00	6.0	94.0	0.0	-1.17	0.88	0.78	0.74	—	4516	577	2	0	0	0	0	logfile
✔	7PDE	13335	2024-02-14	2021-08-05	4.5	4.95	—	4.5	0.006	0.79	0.0	0.04	14.84	0.00	1.869	29.42	0.19	9.2	90.8	0.0	-3.63	0.69	0.80	—	4.5	0.003	0.69	0.0	0.04	14.21	0.00	1.997	15.73	0.00	4.9	95.1	0.0	0.05	1.33	0.68	0.79	—	9553	1187	2	0	2	0	0	logfile
✔	7PDG	13337	2024-02-13	2021-08-05	4.3	4.51	—	3.1	0.005	0.82	0.0	0.05	14.59	0.00	2.161	16.17	0.00	5.2	94.8	0.0	-0.49	0.58	0.72	—	3.1	0.003	0.73	0.0	0.04	14.60	0.00	2.186	14.60	0.00	5.8	94.2	0.0	-0.07	0.88	0.59	0.73	—	7642	970	2	0	0	0	0	logfile
✔	7RQ7	24629	2024-02-13	2021-08-05	3.95	4.02	—	4.0	0.005	0.95	0.0	0.05	14.60	0.01	2.353	6.68	0.31	5.8	94.2	0.0	-5.29	0.66	0.80	1.53	3.9	0.003	0.81	0.0	0.04	16.72	0.00	2.200	14.60	3.14	5.5	94.5	0.0	-0.26	1.19	0.67	0.80	1.11	6380	861	2	0	0	0	0	logfile
✔	7PDF	13336	2024-02-13	2021-08-05	3.8	3.91	—	3.8	0.008	0.83	0.0	0.05	14.63	0.00	1.885	16.57	0.29	10.1	89.9	0.0	-4.24	0.81	0.83	1.65	3.8	0.003	0.67	0.0	0.04	16.79	0.00	1.984	13.11	1.29	4.0	96.0	0.0	-0.90	0.64	0.80	0.81	1.05	6427	794	2	0	2	0	0	logfile
✔	7RQ6	24628	2024-02-21	2021-08-05	4.18	4.41	4.17	4.2	0.005	0.76	1.0	0.05	13.25	0.00	2.159	14.00	0.03	8.3	91.6	0.1	-1.63	0.82	0.76	—	4.2	0.003	0.65	0.0	0.04	13.16	0.00	2.219	12.64	0.00	7.9	92.0	0.1	-1.48	0.41	0.82	0.75	—	31368	3951	15	0	42	0	0	logfile
✔	7FJi	31621	2024-02-23	2021-08-04	3.6	3.85	—	3.5	0.010	1.34	30.0	0.10	14.53	0.01	1.362	13.24	3.59	4.5	95.3	0.2	-1.23	0.81	0.74	1.61	3.5	0.005	0.77	0.0	0.04	16.81	0.00	2.143	15.17	3.15	5.1	94.8	0.1	-0.26	1.85	0.85	0.83	1.74	39536	4863	26	43	8	0	0	logfile
✔	7PD8	13331	2024-02-13	2021-08-04	4.2	4.36	—	4.2	0.009	1.08	0.0	0.05	15.65	0.01	2.003	34.24	1.09	11.2	88.8	0.0	-4.82	0.59	0.78	—	4.2	0.004	0.76	0.0	0.04	14.42	0.00	2.122	17.15	0.00	5.8	94.2	0.0	-0.52	1.16	0.57	0.75	—	7642	970	2	0	0	0	0	logfile
✔	7RPW	24624	2024-02-15	2021-08-04	4.38	4.64	—	4.4	0.003	0.57	0.0	0.04	19.29	0.00	1.756	18.05	9.97	11.3	88.6	0.1	-2.82	0.77	0.68	—	4.4	0.004	0.70	0.0	0.05	18.85	0.00	1.078	20.80	0.00	12.6	87.4	0.1	-3.21	3.74	0.77	0.68	—	10594	1179	10	62	5	0	0	logfile
✔	7PD4	13330	2024-02-13	2021-08-04	4.9	4.13	—	7.8	0.005	0.87	0.0	0.05	14.59	0.00	2.035	38.59	0.00	11.7	88.3	0.0	-4.80	0.73	0.72	—	7.8	0.005	0.84	0.0	0.05	13.74	0.00	2.064	24.98	0.00	6.5	93.5	0.0	-0.78	1.47	0.73	0.74	—	6676	842	1	0	0	0	0	logfile
✔	7FJo	31625	2024-02-20	2021-08-04	3.34	3.72	—	3.5	0.012	1.56	4.0	0.09	12.54	0.02	1.277	9.35	3.26	7.2	92.4	0.4	-1.06	0.55	0.36	0.19	3.5	0.008	0.90	0.0	0.05	14.86	0.00	2.029	14.34	2.02	6.2	93.7	0.1	-0.68	1.94	0.78	0.82	1.95	28547	3640	12	0	25	0	0	logfile
✔	7FJM	31623	2024-02-13	2021-08-04	3.3	3.57	—	3.5	0.014	1.57	16.0	0.12	11.98	0.01	2.194	5.81	3.44	9.2	90.3	0.5	-4.28	0.65	0.76	2.17	3.5	0.003	0.73	0.0	0.04	14.00	0.01	2.186	7.52	3.71	8.3	91.4	0.3	-1.42	1.68	0.66	0.82	1.49	7086	973	1	0	0	0	0	logfile
✔	7FJJ	31622	2024-02-23	2021-08-04	3.6	3.87	—	3.4	0.012	1.65	80.0	0.13	16.48	0.01	1.789	17.52	9.73	5.1	94.3	0.5	-0.42	0.81	0.72	1.44	3.5	0.005	0.80	0.0	0.04	17.24	0.00	2.050	15.70	3.89	5.7	94.3	0.1	-0.48	1.53	0.86	0.82	1.80	39474	4847	26	48	9	0	0	logfile
✔	7FJN	31624	2024-02-20	2021-08-04	3.25	3.88	—	3.3	0.012	1.56	4.0	0.09	12.29	0.02	1.560	6.11	2.63	7.5	92.1	0.4	-1.21	0.77	0.67	1.19	3.3	0.003	0.61	0.0	0.04	13.32	0.00	2.195	7.22	1.02	4.1	95.8	0.1	0.27	1.04	0.85	0.84	2.25	26824	3418	10	0	25	0	0	logfile

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