Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7FJJ	31622	2024-02-23	2021-08-04	3.6	3.87	—	3.4	0.012	1.65	80.0	0.13	16.48	0.01	1.789	17.52	9.73	5.1	94.3	0.5	-0.42	0.81	0.72	1.44	3.5	0.005	0.80	0.0	0.04	17.24	0.00	2.050	15.70	3.89	5.7	94.3	0.1	-0.48	1.53	0.86	0.82	1.80	39474	4847	26	48	9	0	0	logfile
✔	7FJo	31625	2024-02-20	2021-08-04	3.34	3.72	—	3.5	0.012	1.56	4.0	0.09	12.54	0.02	1.277	9.35	3.26	7.2	92.4	0.4	-1.06	0.55	0.36	0.19	3.5	0.008	0.90	0.0	0.05	14.86	0.00	2.029	14.34	2.02	6.2	93.7	0.1	-0.68	1.94	0.78	0.82	1.95	28547	3640	12	0	25	0	0	logfile
✔	7FJN	31624	2024-02-20	2021-08-04	3.25	3.88	—	3.3	0.012	1.56	4.0	0.09	12.29	0.02	1.560	6.11	2.63	7.5	92.1	0.4	-1.21	0.77	0.67	1.19	3.3	0.003	0.61	0.0	0.04	13.32	0.00	2.195	7.22	1.02	4.1	95.8	0.1	0.27	1.04	0.85	0.84	2.25	26824	3418	10	0	25	0	0	logfile
✔	7FJF	31620	2024-02-14	2021-08-03	3.1	2.99	—	3.2	0.010	1.34	0.0	0.07	12.22	0.01	2.256	4.88	1.73	8.9	90.8	0.3	-3.59	0.60	0.76	2.76	3.2	0.003	0.64	0.0	0.04	15.32	0.00	2.132	5.30	2.48	5.3	94.6	0.1	0.40	2.42	0.65	0.83	3.12	8377	1058	10	0	2	0	0	logfile
✔	7RPo	24618	2024-02-15	2021-08-03	4.16	2.77	—	1.8	0.003	0.50	0.0	0.04	16.98	0.00	1.759	6.97	1.64	8.5	91.5	0.0	-2.01	0.74	0.71	—	1.8	0.004	0.70	0.0	0.04	18.37	0.00	2.025	11.88	0.10	9.4	90.5	0.1	-2.28	2.28	0.75	0.71	—	10602	1179	9	62	5	0	0	logfile
✔	7PC2	13316	2024-02-20	2021-08-03	2.8	3.39	—	6.5	0.033	1.66	5.0	0.06	19.87	0.01	1.809	9.01	1.49	7.8	92.2	0.0	-3.81	0.43	0.05	-0.14	2.8	0.004	0.92	0.0	0.05	15.28	0.00	2.070	15.63	2.61	6.8	93.2	0.0	-1.15	1.37	0.58	0.35	0.25	27063	3093	68	0	210	0	0	logfile
✔	7RPH	24614	2024-02-14	2021-08-03	2.5	2.68	2.59	2.7	0.017	1.89	4.0	0.12	15.18	0.01	1.952	2.03	0.61	2.1	97.9	0.0	-0.70	0.53	0.76	4.93	2.7	0.002	0.61	0.0	0.04	14.22	0.00	2.203	5.67	2.21	1.5	98.5	0.0	2.00	1.28	0.66	0.85	2.92	8573	926	1	0	36	86	0	logfile
✔	7PC0	13315	2024-02-16	2021-08-03	3.0	3.74	3.11	3.5	0.004	0.74	0.0	0.23	15.41	0.00	2.001	4.66	0.00	5.6	94.4	0.0	-0.52	0.77	0.84	4.05	3.5	0.005	0.73	0.0	0.05	15.44	0.00	2.149	9.67	1.59	5.1	94.9	0.1	0.12	0.94	0.77	0.86	3.65	15748	1911	17	0	26	0	0	logfile
✔	7PBZ	13314	2024-02-16	2021-08-03	2.79	3.47	2.89	3.2	0.004	0.77	0.0	0.12	15.13	0.01	2.136	4.25	0.00	2.9	97.1	0.0	0.33	0.75	0.86	5.20	3.2	0.003	0.61	0.0	0.04	14.74	0.00	2.095	6.41	1.59	2.4	97.6	0.0	0.88	0.42	0.76	0.88	4.70	14822	1773	17	0	37	0	0	logfile
✔	7RPK	24617	2024-02-14	2021-08-03	2.7	2.92	2.71	2.9	0.015	1.75	1.0	0.10	14.86	0.01	1.695	0.59	0.21	3.0	97.0	0.0	0.02	0.63	0.80	4.47	2.9	0.003	0.59	0.0	0.04	14.03	0.00	2.208	5.15	1.55	2.6	97.4	0.0	2.34	0.99	0.69	0.86	3.68	10018	1104	5	0	40	42	0	logfile
✔	7RP6	24613	2024-02-13	2021-08-03	3.78	3.85	—	3.8	0.006	0.96	0.0	0.06	14.85	0.01	2.334	5.72	0.59	5.7	94.3	0.0	-4.72	0.69	0.82	1.37	3.8	0.003	0.71	0.0	0.04	16.70	0.00	2.208	11.07	3.99	4.2	95.8	0.0	-0.09	1.15	0.67	0.82	0.37	6753	900	2	0	0	0	0	logfile
✔	7RP5	24612	2024-02-13	2021-08-03	3.72	3.93	—	3.9	0.005	1.01	0.0	0.05	14.74	0.01	2.346	4.77	0.46	5.7	94.3	0.0	-4.74	0.68	0.81	1.10	3.9	0.003	0.70	0.0	0.04	16.25	0.00	2.183	11.10	3.49	5.0	95.0	0.0	0.47	1.54	0.69	0.81	1.09	6578	883	2	0	0	0	0	logfile
✔	7RPJ	24616	2024-02-13	2021-08-03	3.2	3.54	3.29	3.6	0.014	1.72	5.0	0.10	13.32	0.01	2.458	3.51	0.98	4.5	95.4	0.1	-1.66	0.57	0.65	2.39	3.6	0.003	0.65	0.0	0.04	13.69	0.00	2.200	8.46	1.47	3.4	96.6	0.0	1.54	1.36	0.65	0.81	1.92	7926	926	1	0	19	0	0	logfile
✔	7PCH	13320	2024-02-15	2021-08-03	2.89	3.82	2.93	3.4	0.012	1.54	0.0	0.10	13.62	0.01	2.343	0.97	0.55	3.7	96.3	0.0	1.22	0.89	0.83	3.70	3.4	0.004	0.61	0.0	0.04	14.22	0.00	2.176	5.93	0.36	1.0	99.0	0.0	2.40	1.13	0.92	0.91	3.65	10798	1254	16	0	4	510	0	logfile
✔	7RPi	24615	2024-02-14	2021-08-03	2.5	2.74	2.62	2.8	0.016	1.82	2.0	0.11	14.73	0.01	2.170	0.93	0.12	2.0	98.0	0.0	-0.69	0.50	0.73	4.35	2.8	0.002	0.60	0.0	0.04	13.38	0.00	2.216	6.08	1.35	1.4	98.6	0.0	2.17	0.53	0.60	0.82	2.91	8526	926	1	0	35	43	0	logfile
✔	7FJE	31619	2024-02-14	2021-08-03	3.0	2.96	—	3.2	0.010	1.19	0.0	0.07	11.62	0.01	2.287	2.42	0.97	7.9	91.8	0.3	-3.03	0.76	0.84	4.04	3.2	0.003	0.66	0.0	0.04	15.67	0.00	2.224	4.42	3.56	6.5	93.4	0.1	0.35	1.31	0.75	0.85	2.80	8338	1058	9	0	1	0	0	logfile
✔	7FJD	31618	2024-02-14	2021-08-03	3.2	2.83	—	3.2	0.011	1.24	0.0	0.07	11.94	0.01	2.229	3.02	0.87	8.9	90.9	0.2	-3.57	0.65	0.82	3.85	3.2	0.004	0.66	0.0	0.04	15.43	0.00	2.221	4.23	3.37	7.5	92.5	0.0	-0.53	2.30	0.64	0.82	2.44	8352	1058	10	0	2	0	0	logfile
✔	7RoZ	24610	2024-02-13	2021-08-02	3.1	3.60	—	3.3	0.003	0.54	0.0	0.04	13.57	0.01	2.064	11.67	0.00	6.8	93.2	0.0	-1.53	0.82	0.75	2.82	3.3	0.004	0.68	0.0	0.04	15.34	0.00	2.056	15.01	2.10	8.1	91.9	0.0	-0.98	1.17	0.85	0.82	2.97	7774	1064	1	0	1	0	0	logfile
✔	7PBL	13294	2024-02-21	2021-08-02	3.2	3.26	3.27	3.2	0.004	0.70	0.0	0.04	14.61	0.01	1.831	1.47	0.06	1.2	98.8	0.0	-0.65	0.79	0.84	3.14	3.2	0.003	0.57	0.0	0.04	16.73	0.00	1.853	4.33	1.25	1.5	98.5	0.0	1.49	1.39	0.81	0.86	2.47	31318	1918	15	30	9	0	15439	logfile
✔	7PBR	13300	2024-02-21	2021-08-02	3.0	3.00	—	2.9	0.004	0.72	0.0	0.04	15.02	0.01	1.854	1.43	0.13	0.8	99.2	0.0	-0.67	0.83	0.85	3.29	2.9	0.004	0.63	0.0	0.04	18.24	0.00	1.812	5.25	1.60	1.7	98.3	0.0	1.29	1.39	0.83	0.87	2.72	30604	1870	14	30	10	0	15077	logfile

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