Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7PBR	13300	2024-02-21	2021-08-02	3.0	3.00	—	2.9	0.004	0.72	0.0	0.04	15.02	0.01	1.854	1.43	0.13	0.8	99.2	0.0	-0.67	0.83	0.85	3.29	2.9	0.004	0.63	0.0	0.04	18.24	0.00	1.812	5.25	1.60	1.7	98.3	0.0	1.29	1.39	0.83	0.87	2.72	30604	1870	14	30	10	0	15077	logfile
✔	7PBX	13308	2024-02-14	2021-08-02	3.43	3.70	3.43	3.1	0.032	2.53	206.0	0.21	19.43	0.02	0.597	32.75	11.71	3.1	95.3	1.6	1.29	0.69	0.65	1.83	3.2	0.003	0.75	0.0	0.04	17.10	0.00	1.907	13.75	1.35	4.6	95.3	0.1	1.35	1.42	0.90	0.86	2.10	59472	8015	35	0	28	0	0	logfile
✔	7PBJ	13293	2024-02-14	2021-08-02	3.4	3.54	3.40	3.2	0.018	2.20	140.0	0.13	19.50	0.01	0.650	29.74	11.71	2.5	96.9	0.6	1.69	0.71	0.67	2.07	3.2	0.004	0.74	1.0	0.04	17.55	0.00	1.892	15.19	1.99	3.3	96.6	0.1	1.08	2.34	0.89	0.86	1.98	59486	8015	42	0	28	14	0	logfile
✔	7PBU	13303	2024-02-17	2021-08-02	3.3	2.68	—	3.4	0.005	0.82	0.0	0.05	16.55	0.01	2.364	1.82	0.00	1.1	98.9	0.0	0.22	0.60	0.76	2.90	3.4	0.005	0.62	0.0	0.04	20.38	0.00	2.118	5.40	3.16	1.4	98.6	0.0	1.01	1.84	0.61	0.79	1.50	19243	1063	12	68	0	0	9507	logfile
✔	7PBM	13295	2024-02-21	2021-08-02	3.2	3.36	3.30	3.3	0.004	0.72	0.0	0.04	14.99	0.01	1.840	1.18	0.06	1.1	98.9	0.0	-1.25	0.76	0.83	3.08	3.3	0.003	0.56	0.0	0.04	16.79	0.00	1.818	2.89	1.16	2.0	98.0	0.0	0.86	0.73	0.75	0.84	2.41	32079	1968	16	30	9	0	15819	logfile
✔	7PBD	13290	2024-02-16	2021-08-02	3.04	3.81	3.11	3.5	0.005	0.76	0.0	0.10	16.57	0.00	2.062	4.44	0.00	3.8	96.2	0.0	0.14	0.77	0.82	3.43	3.5	0.003	0.58	0.0	0.04	13.97	0.00	2.187	6.30	1.07	2.9	97.0	0.1	1.03	0.38	0.78	0.85	2.83	14822	1784	15	0	25	0	0	logfile
✔	7PBW	13307	2024-02-14	2021-08-02	2.1	1.98	—	2.1	0.009	0.99	0.0	0.05	12.27	0.01	2.243	2.93	0.00	0.0	100.0	0.0	3.14	0.78	0.90	7.90	2.1	0.004	0.76	0.0	0.04	14.40	0.01	2.149	7.89	0.46	0.0	100.0	0.0	4.47	0.28	0.77	0.90	7.39	9500	873	54	0	81	230	0	logfile
✔	7PBQ	13299	2024-02-21	2021-08-02	3.1	3.08	—	3.0	0.004	0.72	0.0	0.04	14.86	0.01	1.821	1.53	0.19	1.2	98.8	0.0	-0.62	0.81	0.84	3.27	3.0	0.004	0.58	0.0	0.04	17.40	0.00	1.807	3.73	1.56	2.2	97.8	0.0	1.30	1.37	0.82	0.86	2.46	31323	1918	15	30	10	0	15439	logfile
✔	7PBP	13298	2024-02-21	2021-08-02	3.2	3.11	—	3.2	0.004	0.73	0.0	0.04	14.91	0.01	1.860	1.52	0.12	1.0	99.0	0.0	-0.71	0.79	0.83	2.81	3.2	0.004	0.58	0.0	0.04	16.88	0.00	1.798	3.11	1.28	2.0	98.0	0.0	1.21	0.81	0.80	0.86	2.23	32077	1968	16	30	9	0	15818	logfile
✔	7PBS	13301	2024-02-21	2021-08-02	3.3	2.55	—	3.2	0.005	0.71	0.0	0.05	14.97	0.01	1.778	1.66	0.25	0.7	99.3	0.0	-0.18	0.65	0.77	3.13	3.2	0.003	0.55	0.0	0.04	17.18	0.00	1.765	2.80	0.69	1.9	98.1	0.0	1.30	1.31	0.71	0.82	2.44	31328	1918	15	30	11	0	15439	logfile
✔	7PBT	13302	2024-02-21	2021-08-02	3.3	2.86	3.16	3.1	0.004	0.69	0.0	0.04	15.00	0.01	1.830	1.18	0.12	1.1	98.9	0.0	-0.27	0.67	0.79	3.06	3.1	0.003	0.55	0.0	0.04	17.17	0.00	1.803	2.58	1.00	1.3	98.7	0.0	1.48	1.32	0.73	0.84	2.63	31318	1918	15	30	9	0	15439	logfile
✔	7PBo	13297	2024-02-21	2021-08-02	2.9	2.74	—	2.9	0.004	0.74	0.0	0.04	14.89	0.01	1.833	1.24	0.12	1.0	99.0	0.0	-0.74	0.80	0.83	3.10	2.9	0.003	0.65	0.0	0.04	17.89	0.01	1.850	4.85	1.65	1.7	98.3	0.0	1.35	1.80	0.80	0.85	2.34	32073	1968	16	30	8	0	15818	logfile
✔	7FiY	31606	2024-02-14	2021-08-01	3.4	3.64	—	3.6	0.004	0.82	0.0	0.06	8.34	0.01	2.275	3.69	0.00	2.6	97.4	0.0	-1.10	0.67	0.75	2.44	3.6	0.003	0.56	0.0	0.04	13.81	0.00	2.137	8.66	2.85	2.4	97.6	0.0	1.28	1.70	0.71	0.80	1.97	9367	1152	7	0	6	0	0	logfile
✔	7FiZ	31607	2024-02-23	2021-08-01	3.28	3.80	—	3.6	0.008	1.14	3.0	0.06	11.03	0.01	2.212	6.62	0.31	6.9	92.9	0.2	-4.01	0.66	0.60	1.78	3.6	0.004	0.70	0.0	0.04	14.27	0.00	2.095	12.75	1.81	6.3	93.7	0.1	-0.79	0.79	0.71	0.77	1.33	36970	4674	12	0	27	0	0	logfile
✔	7FiM	31603	2024-02-14	2021-07-31	3.4	3.76	—	3.8	0.004	0.83	0.0	0.05	13.92	0.01	2.226	7.19	0.41	2.3	97.7	0.0	-2.72	0.56	0.64	1.94	3.8	0.003	0.61	0.0	0.04	16.50	0.00	2.181	9.28	3.67	3.5	96.5	0.0	-0.60	0.79	0.70	0.81	1.51	9213	1157	6	0	0	0	0	logfile
✔	7Fii	31598	2024-02-14	2021-07-31	4.3	4.37	—	4.1	0.002	0.36	0.0	0.04	8.97	0.00	2.073	1.66	0.00	0.9	99.1	0.0	3.08	0.64	0.69	—	4.1	0.003	0.61	0.0	0.04	9.62	0.00	2.261	5.54	0.00	3.8	96.2	0.0	0.54	0.75	0.66	0.75	—	8765	1522	6	0	0	0	0	logfile
✔	7FiJ	31599	2024-02-13	2021-07-31	3.8	2.32	—	1.8	0.001	0.41	0.0	0.04	8.02	0.00	2.344	3.95	0.00	4.1	95.9	0.0	1.10	0.58	0.50	3.05	1.3	0.006	0.86	0.0	0.05	12.15	0.00	2.164	13.33	11.25	16.5	83.5	0.0	-1.70	0.74	0.62	0.56	2.72	3061	561	1	0	0	0	0	logfile
✔	7FiD	31589	2024-02-23	2021-07-31	2.44	3.37	—	3.1	0.010	1.10	0.0	0.06	11.37	0.01	2.165	3.92	0.36	5.7	94.1	0.2	-3.56	0.79	0.79	3.22	3.1	0.005	0.70	0.0	0.04	13.75	0.00	2.024	7.76	1.50	4.8	95.2	0.0	-0.08	0.52	0.74	0.85	2.51	36992	4674	13	0	28	0	0	logfile
✔	7FiH	31597	2024-02-15	2021-07-31	3.2	2.63	—	3.5	0.005	0.76	1.0	0.05	13.98	0.00	1.962	8.33	0.17	3.3	96.6	0.1	-0.18	0.75	0.71	1.63	3.4	0.004	0.95	0.0	0.04	16.68	0.00	2.090	12.87	2.67	4.4	95.6	0.0	0.23	1.28	0.79	0.78	1.82	10853	1381	7	0	1	0	0	logfile
✔	7FiE	31590	2024-02-23	2021-07-31	2.36	3.35	—	3.1	0.008	1.11	3.0	0.06	11.62	0.01	2.243	4.11	0.89	4.2	95.7	0.2	-3.44	0.79	0.79	3.14	3.0	0.005	0.68	1.0	0.04	14.08	0.00	2.039	7.68	1.50	3.8	96.2	0.0	0.19	0.55	0.75	0.87	2.59	36997	4674	13	0	28	0	0	logfile

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