Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7FiD	31589	2024-02-23	2021-07-31	2.44	3.37	—	3.1	0.010	1.10	0.0	0.06	11.37	0.01	2.165	3.92	0.36	5.7	94.1	0.2	-3.56	0.79	0.79	3.22	3.1	0.005	0.70	0.0	0.04	13.75	0.00	2.024	7.76	1.50	4.8	95.2	0.0	-0.08	0.52	0.74	0.85	2.51	36992	4674	13	0	28	0	0	logfile
✔	7FiE	31590	2024-02-23	2021-07-31	2.36	3.35	—	3.1	0.008	1.11	3.0	0.06	11.62	0.01	2.243	4.11	0.89	4.2	95.7	0.2	-3.44	0.79	0.79	3.14	3.0	0.005	0.68	1.0	0.04	14.08	0.00	2.039	7.68	1.50	3.8	96.2	0.0	0.19	0.55	0.75	0.87	2.59	36997	4674	13	0	28	0	0	logfile
✔	7FiK	31600	2024-02-15	2021-07-31	3.7	3.41	—	2.2	0.007	0.98	1.0	0.05	9.93	0.00	1.868	3.44	3.73	6.0	93.8	0.2	-2.13	0.50	0.52	1.35	2.2	0.004	0.63	0.0	0.04	11.28	0.00	1.938	6.39	2.55	5.4	94.6	0.0	1.43	0.64	0.60	0.68	1.69	116163	19039	32	0	722	0	0	logfile
✔	7Ro6	24589	2024-02-19	2021-07-30	4.1	4.30	—	3.8	0.006	0.69	0.0	0.04	12.71	0.01	2.220	13.37	1.33	5.4	94.6	0.0	1.57	0.68	0.86	—	3.8	0.003	0.72	0.0	0.05	11.87	0.01	2.208	11.17	0.00	3.4	96.6	0.0	2.99	0.57	0.68	0.84	—	137200	18800	200	0	0	0	0	logfile
✔	7Roi	24597	2024-02-20	2021-07-30	4.3	4.43	—	4.1	0.004	0.66	0.0	0.05	12.41	0.01	2.400	9.73	1.33	4.3	95.7	0.0	1.63	0.67	0.85	—	4.1	0.004	0.75	0.0	0.05	11.54	0.01	2.166	10.86	0.00	4.1	95.9	0.0	2.70	0.61	0.67	0.85	—	137200	18800	200	0	0	0	0	logfile
✔	7RoC	24591	2024-02-19	2021-07-30	3.7	3.89	—	3.7	0.003	0.68	0.0	0.05	11.37	0.01	2.563	18.31	0.00	5.4	94.6	0.0	3.01	0.69	0.84	1.59	3.7	0.005	0.77	0.0	0.04	14.51	0.01	2.090	9.96	2.43	5.2	94.7	0.0	3.38	1.20	0.70	0.86	1.43	137200	18800	200	0	0	0	0	logfile
✔	7Ro0	24584	2024-02-13	2021-07-30	3.75	3.86	—	3.8	0.008	1.03	0.0	0.06	14.95	0.01	2.202	5.07	0.74	6.3	93.7	0.0	-5.18	0.69	0.84	1.25	3.8	0.003	0.65	0.0	0.04	16.09	0.00	2.013	7.47	3.70	4.3	95.7	0.0	-0.33	0.46	0.68	0.83	0.74	6742	898	2	0	0	0	0	logfile
✔	7RoH	24595	2024-02-19	2021-07-30	4.0	4.01	—	3.8	0.005	0.67	0.0	0.04	12.43	0.01	2.350	11.51	2.67	5.4	94.6	0.0	0.83	0.67	0.85	—	3.8	0.004	0.74	0.0	0.04	14.63	0.01	2.200	10.53	2.01	5.4	94.6	0.0	3.00	1.23	0.66	0.84	—	137200	18800	200	0	0	0	0	logfile
✔	7Ro5	24588	2024-02-19	2021-07-30	4.1	4.27	—	3.9	0.005	0.85	0.0	0.05	13.48	0.01	2.235	12.45	4.00	4.3	95.7	0.0	1.05	0.68	0.85	—	3.9	0.004	0.74	0.0	0.05	11.68	0.01	2.269	11.68	0.00	5.0	95.0	0.0	2.85	0.54	0.68	0.85	—	137200	18800	200	0	0	0	0	logfile
✔	7RoD	24592	2024-02-20	2021-07-30	3.8	4.39	—	3.9	0.004	0.70	0.0	0.05	11.72	0.01	2.388	12.51	0.00	4.3	95.7	0.0	2.79	0.69	0.87	2.22	4.0	0.004	0.79	0.0	0.04	14.47	0.01	2.204	10.61	1.87	6.1	93.9	0.0	3.23	0.51	0.70	0.87	1.68	139258	19082	203	0	0	0	0	logfile
✔	7RNX	24582	2024-02-13	2021-07-30	3.42	3.46	—	3.4	0.013	1.07	0.0	0.06	14.18	0.01	2.266	4.77	0.44	5.2	94.8	0.0	-4.11	0.69	0.84	1.92	3.5	0.003	0.59	0.0	0.04	15.33	0.00	2.224	9.04	3.24	3.3	96.7	0.0	1.31	0.37	0.68	0.85	2.08	6758	900	2	0	0	0	0	logfile
✔	7RoE	24593	2024-02-19	2021-07-30	3.7	3.80	—	3.5	0.006	0.69	0.0	0.04	12.63	0.01	2.266	11.99	4.00	6.7	93.3	0.0	1.70	0.67	0.86	1.96	3.5	0.004	0.73	0.0	0.04	14.73	0.01	2.049	9.76	1.65	5.9	94.1	0.1	3.36	0.50	0.67	0.85	1.73	137200	18800	200	0	0	0	0	logfile
✔	7Ro4	24587	2024-02-19	2021-07-30	4.3	4.51	—	4.2	0.006	0.78	0.0	0.05	13.23	0.01	2.237	17.04	4.00	5.4	94.6	0.0	0.68	0.68	0.85	—	4.2	0.004	0.79	0.0	0.05	11.04	0.01	2.091	14.04	0.01	6.0	94.0	0.0	1.87	0.59	0.68	0.85	—	137200	18800	200	0	0	0	0	logfile
✔	7Ro3	24586	2024-02-19	2021-07-30	4.8	4.78	—	4.4	0.004	0.65	0.0	0.05	12.47	0.01	2.358	11.99	1.33	4.3	95.7	0.0	1.70	0.67	0.84	—	4.4	0.004	0.73	0.0	0.05	11.54	0.01	2.205	18.66	0.00	6.5	93.5	0.0	1.30	2.09	0.68	0.85	—	137200	18800	200	0	0	0	0	logfile
✔	7RoB	24590	2024-02-19	2021-07-30	3.9	4.43	—	4.1	0.004	0.71	0.0	0.04	13.08	0.01	2.151	11.28	4.00	4.3	95.7	0.0	1.28	0.68	0.85	2.11	4.1	0.004	0.89	0.0	0.05	14.51	0.01	2.070	12.30	2.01	5.7	94.3	0.0	2.79	1.64	0.68	0.85	1.53	137200	18800	200	0	0	0	0	logfile
✔	7RoG	24594	2024-02-19	2021-07-30	3.8	4.00	—	3.7	0.007	0.74	0.0	0.05	12.33	0.01	2.355	14.52	1.33	5.4	94.6	0.0	1.76	0.67	0.85	1.80	3.8	0.004	0.73	0.0	0.04	14.62	0.01	2.140	11.30	1.19	4.0	96.0	0.0	3.11	1.65	0.66	0.84	1.80	137200	18800	200	0	0	0	0	logfile
✔	7FHN	31587	2024-02-17	2021-07-29	3.3	3.55	—	3.4	0.004	0.65	0.0	0.04	13.87	0.00	2.107	10.58	0.09	3.4	96.6	0.0	1.66	0.73	0.76	2.66	3.4	0.003	0.63	0.0	0.04	16.51	0.00	2.126	12.17	1.73	2.7	97.3	0.0	2.41	0.56	0.75	0.80	2.02	10648	1294	4	0	6	0	0	logfile
✔	7FHo	31588	2024-02-17	2021-07-29	2.8	2.98	—	3.1	0.002	0.57	0.0	0.04	12.96	0.00	2.179	6.20	0.17	3.1	96.9	0.0	1.34	0.64	0.80	3.27	3.0	0.003	0.57	0.0	0.04	15.70	0.00	2.126	6.67	0.78	2.8	97.2	0.0	2.73	1.10	0.68	0.85	3.07	10648	1294	4	0	6	0	0	logfile
✔	7RNN	24580	2024-02-13	2021-07-29	2.86	2.05	—	3.2	0.008	0.80	0.0	0.14	14.96	0.00	1.929	6.74	0.55	3.4	96.6	0.0	-1.11	0.50	0.76	5.00	3.2	0.005	0.65	0.0	0.04	15.49	0.00	2.242	6.08	1.91	1.9	98.1	0.0	0.44	0.48	0.49	0.87	4.00	4000	540	2	0	2	0	0	logfile
✔	7FHK	31585	2024-02-16	2021-07-29	3.3	3.56	—	3.6	0.004	0.60	0.0	0.04	12.53	0.00	2.210	8.33	0.00	2.1	97.9	0.0	1.22	0.66	0.83	2.28	3.6	0.003	0.59	0.0	0.04	14.78	0.00	2.243	7.42	1.18	3.1	96.9	0.0	2.44	0.45	0.65	0.83	2.35	11058	1326	6	0	28	0	0	logfile

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