Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7P67	13220	2024-02-14	2021-07-15	3.1	3.08	2.94	3.2	0.007	1.06	0.0	0.09	11.98	0.00	2.338	3.61	0.00	4.7	95.3	0.0	-3.19	0.49	0.83	4.12	3.1	0.003	0.64	0.0	0.05	14.87	0.00	2.130	10.10	2.58	5.5	94.5	0.0	-3.27	2.47	0.43	0.84	4.54	8120	1080	10	0	0	0	0	logfile
✔	7P65	13218	2024-02-13	2021-07-15	2.7	2.87	2.60	2.8	0.004	0.63	0.0	0.05	12.60	0.00	2.381	2.01	0.00	2.8	97.2	0.0	-2.90	0.55	0.86	5.81	2.8	0.008	0.71	0.0	0.05	15.63	0.00	2.295	5.79	0.84	3.7	96.3	0.0	-2.90	0.47	0.48	0.88	5.24	4145	550	5	0	0	0	0	logfile
✔	7P5X	13205	2024-02-21	2021-07-15	3.2	3.31	3.10	3.3	0.003	0.51	1.0	0.04	13.29	0.00	2.207	5.11	1.73	3.4	96.6	0.0	0.69	0.73	0.86	3.27	3.3	0.004	0.54	0.0	0.04	15.78	0.00	2.126	6.11	2.17	3.6	96.4	0.0	0.69	0.90	0.78	0.90	2.86	29465	3588	12	86	2	0	0	logfile
✔	7P63	13216	2024-02-23	2021-07-15	3.4	2.86	—	3.2	0.004	0.77	0.0	1.46	15.73	0.01	2.178	6.48	0.49	3.2	96.8	0.0	-0.69	0.87	0.85	2.49	3.2	0.012	2.19	0.0	0.44	16.23	0.00	2.101	11.24	3.23	3.6	96.4	0.0	0.63	0.31	0.87	0.84	2.57	37770	4772	25	0	25	0	0	logfile
✔	7P61	13214	2024-02-23	2021-07-15	3.2	3.01	—	3.1	0.004	0.82	0.0	1.47	15.22	0.01	2.156	7.19	0.29	3.9	96.1	0.0	-1.15	0.88	0.87	2.37	3.1	0.012	2.23	0.0	0.44	15.71	0.00	1.956	11.31	2.28	4.2	95.8	0.0	0.51	1.15	0.90	0.89	2.61	36690	4681	20	0	15	0	0	logfile
✔	7P62	13215	2024-02-23	2021-07-15	3.6	3.37	—	3.2	0.004	0.83	0.0	1.48	15.12	0.01	2.217	7.10	0.45	4.1	95.9	0.0	-1.26	0.89	0.86	2.08	3.2	0.012	2.21	0.0	0.44	15.56	0.00	2.136	11.85	3.19	4.1	95.9	0.0	0.47	0.35	0.89	0.86	2.18	36597	4675	19	0	13	0	0	logfile
✔	7FCV	31532	2024-02-16	2021-07-15	2.9	3.53	—	3.2	0.008	1.04	0.0	0.06	12.12	0.01	2.271	4.38	0.00	8.4	91.6	0.0	-3.29	0.62	0.81	3.28	3.2	0.003	0.66	0.0	0.04	13.81	0.00	2.251	8.91	1.41	6.3	93.7	0.0	0.60	1.67	0.61	0.82	2.18	15143	1848	8	0	7	0	0	logfile
✔	7P66	13219	2024-02-13	2021-07-15	3.0	3.09	2.70	3.2	0.004	0.66	0.0	0.06	12.13	0.00	2.388	4.21	0.00	3.8	96.2	0.0	-2.50	0.48	0.82	4.06	3.2	0.005	0.61	0.0	0.05	15.15	0.00	2.180	6.01	3.01	5.3	94.7	0.0	-2.91	1.34	0.47	0.84	4.52	4060	540	5	0	0	0	0	logfile
✔	7P5Z	13211	2024-02-18	2021-07-15	3.3	3.83	3.32	3.6	0.003	0.58	0.0	0.04	15.55	0.00	1.475	7.69	0.03	3.7	96.2	0.1	0.31	0.64	0.78	2.13	3.6	0.003	0.58	0.0	0.04	16.78	0.00	1.820	8.67	1.49	4.3	95.7	0.1	0.36	1.21	0.65	0.80	2.04	134187	8215	29	106	31	0	66786	logfile
✔	7P6B	13224	2024-02-13	2021-07-15	2.2	1.98	2.14	2.1	0.004	0.75	0.0	0.09	13.80	0.01	2.246	4.21	0.00	3.8	96.2	0.0	-2.60	0.48	0.85	6.24	2.0	0.003	0.62	0.0	0.05	17.14	0.00	2.160	6.37	1.51	4.5	95.5	0.0	-2.28	0.88	0.49	0.88	6.71	4060	540	5	0	0	0	0	logfile
✔	7RGL	24451	2024-02-25	2021-07-15	2.4	2.51	—	2.4	0.013	1.20	0.0	0.06	16.03	0.01	2.317	3.77	3.66	3.7	96.2	0.2	-1.40	0.65	0.88	5.76	2.4	0.003	0.55	0.0	0.04	15.96	0.00	1.988	3.22	1.36	4.1	95.9	0.0	0.38	0.95	0.66	0.89	5.60	50936	3328	16	0	16	0	25408	logfile
✔	7P5W	13203	2024-02-24	2021-07-15	3.5	2.99	3.45	3.0	0.002	0.49	0.0	0.04	11.73	0.00	2.131	10.96	3.75	4.4	95.6	0.0	-0.37	0.72	0.70	1.03	2.8	0.003	0.62	0.0	0.04	15.30	0.00	2.130	15.89	2.49	5.9	94.1	0.0	-0.79	0.78	0.69	0.64	0.96	41250	5028	12	0	0	0	0	logfile
✔	7RGM	24452	2024-02-14	2021-07-15	2.8	2.86	—	2.9	0.014	1.70	0.0	0.08	17.17	0.01	2.328	1.94	3.63	5.2	94.6	0.3	-1.77	0.62	0.86	3.81	2.9	0.003	0.54	0.0	0.04	17.38	0.00	2.033	5.20	2.13	3.8	96.1	0.1	0.47	1.01	0.60	0.87	3.45	59928	3872	16	0	32	0	29736	logfile
✔	7P5V	13202	2024-02-24	2021-07-15	3.06	2.83	2.99	2.9	0.004	0.51	0.0	0.04	11.64	0.00	2.106	9.09	3.53	3.4	96.6	0.0	-0.53	0.75	0.73	1.90	2.8	0.002	0.54	0.0	0.04	14.60	0.00	2.134	9.65	2.60	3.5	96.5	0.0	-0.13	1.45	0.77	0.77	1.75	41274	5034	12	0	0	0	0	logfile
✔	7RGi	24450	2024-02-24	2021-07-15	3.6	3.55	—	3.6	0.011	1.78	4.0	0.09	15.12	0.01	2.432	1.57	1.84	6.1	93.8	0.1	-2.07	0.57	0.78	2.45	3.5	0.004	0.73	0.0	0.04	15.70	0.00	2.033	10.51	2.85	6.7	93.3	0.0	-0.93	2.11	0.56	0.77	1.84	43712	2856	16	0	16	0	21752	logfile
✔	7RGD	24448	2024-02-15	2021-07-15	3.0	2.86	—	2.9	0.013	2.01	16.0	0.10	19.22	0.01	2.298	2.66	3.19	6.6	93.1	0.3	-1.64	0.57	0.85	4.68	2.9	0.003	0.63	0.0	0.04	17.95	0.01	1.941	4.86	1.85	5.5	94.5	0.0	0.28	1.37	0.57	0.87	4.10	64424	4152	16	0	40	0	31840	logfile
✔	7P5J	13200	2024-02-13	2021-07-14	4.0	3.72	3.98	4.0	0.004	0.72	0.0	0.04	17.48	0.01	2.264	8.81	0.60	2.5	97.5	0.0	2.65	0.51	0.76	—	4.0	0.003	0.77	0.0	0.04	17.34	0.00	2.170	11.11	3.63	1.8	98.2	0.0	3.28	0.46	0.54	0.77	—	6250	798	6	0	8	0	0	logfile
✔	7P5C	13198	2024-02-13	2021-07-14	3.2	3.07	3.09	3.3	0.004	0.60	0.0	0.04	14.52	0.00	2.220	7.00	0.00	2.1	97.9	0.0	2.41	0.57	0.82	2.09	3.3	0.003	0.53	0.0	0.04	15.64	0.00	2.241	6.03	1.83	1.7	98.3	0.0	4.16	0.31	0.52	0.80	1.36	6222	784	6	0	8	0	0	logfile
✔	7FCE	31525	2024-02-19	2021-07-14	3.1	3.19	—	3.1	0.010	0.98	0.0	0.07	12.93	0.01	2.343	1.98	0.99	4.6	95.3	0.2	-0.85	0.73	0.74	1.96	3.1	0.003	0.60	0.0	0.04	14.28	0.00	2.185	4.45	0.99	3.3	96.6	0.0	0.00	1.44	0.82	0.88	3.16	25542	3125	33	0	78	0	0	logfile
✔	7RG9	24445	2024-02-14	2021-07-14	3.2	2.74	—	2.7	0.011	0.87	0.0	0.05	14.59	0.00	1.916	16.10	0.76	8.5	91.5	0.0	-2.49	0.57	0.72	2.97	3.0	0.003	0.67	0.0	0.04	16.78	0.00	2.170	13.04	2.67	3.4	96.6	0.0	-0.53	0.54	0.56	0.72	2.26	9769	1246	6	0	0	0	0	logfile

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