Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7P5W	13203	2024-02-24	2021-07-15	3.5	2.99	3.45	3.0	0.002	0.49	0.0	0.04	11.73	0.00	2.131	10.96	3.75	4.4	95.6	0.0	-0.37	0.72	0.70	1.03	2.8	0.003	0.62	0.0	0.04	15.30	0.00	2.130	15.89	2.49	5.9	94.1	0.0	-0.79	0.78	0.69	0.64	0.96	41250	5028	12	0	0	0	0	logfile
✔	7RGD	24448	2024-02-15	2021-07-15	3.0	2.86	—	2.9	0.013	2.01	16.0	0.10	19.22	0.01	2.298	2.66	3.19	6.6	93.1	0.3	-1.64	0.57	0.85	4.68	2.9	0.003	0.63	0.0	0.04	17.95	0.01	1.941	4.86	1.85	5.5	94.5	0.0	0.28	1.37	0.57	0.87	4.10	64424	4152	16	0	40	0	31840	logfile
✔	7FCV	31532	2024-02-16	2021-07-15	2.9	3.53	—	3.2	0.008	1.04	0.0	0.06	12.12	0.01	2.271	4.38	0.00	8.4	91.6	0.0	-3.29	0.62	0.81	3.28	3.2	0.003	0.66	0.0	0.04	13.81	0.00	2.251	8.91	1.41	6.3	93.7	0.0	0.60	1.67	0.61	0.82	2.18	15143	1848	8	0	7	0	0	logfile
✔	7RGM	24452	2024-02-14	2021-07-15	2.8	2.86	—	2.9	0.014	1.70	0.0	0.08	17.17	0.01	2.328	1.94	3.63	5.2	94.6	0.3	-1.77	0.62	0.86	3.81	2.9	0.003	0.54	0.0	0.04	17.38	0.00	2.033	5.20	2.13	3.8	96.1	0.1	0.47	1.01	0.60	0.87	3.45	59928	3872	16	0	32	0	29736	logfile
✔	7P5V	13202	2024-02-24	2021-07-15	3.06	2.83	2.99	2.9	0.004	0.51	0.0	0.04	11.64	0.00	2.106	9.09	3.53	3.4	96.6	0.0	-0.53	0.75	0.73	1.90	2.8	0.002	0.54	0.0	0.04	14.60	0.00	2.134	9.65	2.60	3.5	96.5	0.0	-0.13	1.45	0.77	0.77	1.75	41274	5034	12	0	0	0	0	logfile
✔	7RGP	24453	2024-02-15	2021-07-15	2.9	2.76	—	2.7	0.006	0.92	0.0	0.05	14.39	0.01	2.145	17.77	0.88	8.3	91.7	0.0	-2.81	0.57	0.75	2.99	2.7	0.005	0.98	1.0	0.04	17.37	0.01	1.857	15.64	3.61	6.0	94.0	0.0	-1.28	1.00	0.57	0.77	2.42	10795	1383	7	0	0	0	0	logfile
✔	7P61	13214	2024-02-23	2021-07-15	3.2	3.01	—	3.1	0.004	0.82	0.0	1.47	15.22	0.01	2.156	7.19	0.29	3.9	96.1	0.0	-1.15	0.88	0.87	2.37	3.1	0.012	2.23	0.0	0.44	15.71	0.00	1.956	11.31	2.28	4.2	95.8	0.0	0.51	1.15	0.90	0.89	2.61	36690	4681	20	0	15	0	0	logfile
✔	7P60	13213	2024-02-23	2021-07-15	3.8	3.10	3.75	3.2	0.004	0.55	0.0	0.04	13.06	0.00	2.130	15.09	5.44	3.9	96.1	0.0	-0.45	0.72	0.69	1.05	2.9	0.004	0.65	0.0	0.04	15.73	0.00	2.125	17.79	3.78	5.2	94.8	0.0	-0.87	1.56	0.70	0.68	0.85	38406	4680	9	0	0	0	0	logfile
✔	7RGi	24450	2024-02-24	2021-07-15	3.6	3.55	—	3.6	0.011	1.78	4.0	0.09	15.12	0.01	2.432	1.57	1.84	6.1	93.8	0.1	-2.07	0.57	0.78	2.45	3.5	0.004	0.73	0.0	0.04	15.70	0.00	2.033	10.51	2.85	6.7	93.3	0.0	-0.93	2.11	0.56	0.77	1.84	43712	2856	16	0	16	0	21752	logfile
✔	7P6E	13227	2024-02-13	2021-07-15	3.4	3.40	3.47	4.1	0.009	0.96	0.0	0.06	8.26	0.01	2.358	3.99	0.00	5.9	94.1	0.0	-4.80	0.54	0.80	4.38	4.1	0.004	0.69	0.0	0.05	13.21	0.00	2.133	9.48	4.21	5.3	94.7	0.0	-4.15	2.67	0.52	0.81	3.99	8090	1050	10	0	0	0	0	logfile
✔	7RGL	24451	2024-02-25	2021-07-15	2.4	2.51	—	2.4	0.013	1.20	0.0	0.06	16.03	0.01	2.317	3.77	3.66	3.7	96.2	0.2	-1.40	0.65	0.88	5.76	2.4	0.003	0.55	0.0	0.04	15.96	0.00	1.988	3.22	1.36	4.1	95.9	0.0	0.38	0.95	0.66	0.89	5.60	50936	3328	16	0	16	0	25408	logfile
✔	7P66	13219	2024-02-13	2021-07-15	3.0	3.09	2.70	3.2	0.004	0.66	0.0	0.06	12.13	0.00	2.388	4.21	0.00	3.8	96.2	0.0	-2.50	0.48	0.82	4.06	3.2	0.005	0.61	0.0	0.05	15.15	0.00	2.180	6.01	3.01	5.3	94.7	0.0	-2.91	1.34	0.47	0.84	4.52	4060	540	5	0	0	0	0	logfile
✔	7P5Z	13211	2024-02-18	2021-07-15	3.3	3.83	3.32	3.6	0.003	0.58	0.0	0.04	15.55	0.00	1.475	7.69	0.03	3.7	96.2	0.1	0.31	0.64	0.78	2.13	3.6	0.003	0.58	0.0	0.04	16.78	0.00	1.820	8.67	1.49	4.3	95.7	0.1	0.36	1.21	0.65	0.80	2.04	134187	8215	29	106	31	0	66786	logfile
✔	7P6D	13226	2024-02-13	2021-07-15	3.3	3.43	3.17	3.5	0.003	0.66	0.0	0.05	11.41	0.00	2.575	2.25	0.00	2.7	97.3	0.0	-2.54	0.55	0.77	3.72	3.5	0.006	0.73	0.0	0.05	13.80	0.00	2.088	4.96	4.65	11.7	88.3	0.0	-3.17	2.42	0.47	0.83	4.41	4340	575	5	0	0	0	0	logfile
✔	7P68	13221	2024-02-14	2021-07-15	2.9	3.23	2.85	3.1	0.006	0.90	0.0	0.07	12.92	0.00	2.430	4.45	0.00	3.3	96.7	0.0	-3.06	0.46	0.80	3.76	3.1	0.004	0.79	0.0	0.05	16.05	0.00	2.115	11.85	5.59	5.8	94.2	0.0	-3.31	1.48	0.41	0.83	3.79	8120	1080	10	0	0	0	0	logfile
✔	7P62	13215	2024-02-23	2021-07-15	3.6	3.37	—	3.2	0.004	0.83	0.0	1.48	15.12	0.01	2.217	7.10	0.45	4.1	95.9	0.0	-1.26	0.89	0.86	2.08	3.2	0.012	2.21	0.0	0.44	15.56	0.00	2.136	11.85	3.19	4.1	95.9	0.0	0.47	0.35	0.89	0.86	2.18	36597	4675	19	0	13	0	0	logfile
✔	7FCD	31524	2024-02-19	2021-07-14	3.9	4.04	—	3.9	0.009	1.13	1.0	0.08	12.31	0.02	2.103	10.36	2.09	7.9	91.9	0.2	-2.64	0.81	0.78	1.68	3.9	0.003	0.60	0.0	0.04	13.39	0.00	2.097	9.64	1.46	5.1	94.9	0.0	-1.01	1.25	0.83	0.81	1.43	24444	3055	6	0	35	0	0	logfile
✔	7RFG	24441	2024-02-14	2021-07-14	2.6	2.42	—	2.4	0.013	2.03	27.0	0.11	19.28	0.02	2.518	1.16	1.84	4.2	95.6	0.2	-0.50	0.62	0.80	5.41	2.4	0.006	0.71	0.0	0.06	19.19	0.01	1.858	7.08	1.81	3.2	96.8	0.0	0.00	1.61	0.65	0.83	5.05	60824	3928	16	0	32	0	30240	logfile
✔	7P5J	13200	2024-02-13	2021-07-14	4.0	3.72	3.98	4.0	0.004	0.72	0.0	0.04	17.48	0.01	2.264	8.81	0.60	2.5	97.5	0.0	2.65	0.51	0.76	—	4.0	0.003	0.77	0.0	0.04	17.34	0.00	2.170	11.11	3.63	1.8	98.2	0.0	3.28	0.46	0.54	0.77	—	6250	798	6	0	8	0	0	logfile
✔	7P5M	13201	2024-02-13	2021-07-14	3.92	3.54	3.67	3.7	0.003	0.60	0.0	0.04	16.50	0.00	2.209	8.88	0.00	0.9	99.1	0.0	3.52	0.51	0.77	1.01	3.7	0.003	0.64	0.0	0.04	16.15	0.00	2.185	10.33	4.28	1.2	98.8	0.0	3.94	0.45	0.53	0.78	1.01	6204	788	8	0	12	0	0	logfile

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