Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7RHL	24465	2024-02-16	2021-07-17	3.03	2.43	—	2.7	0.003	0.56	0.0	0.04	13.97	0.00	2.217	5.43	0.00	1.5	98.5	0.0	1.66	0.63	0.84	3.54	2.7	0.003	0.48	0.0	0.04	14.97	0.00	2.179	8.77	0.81	1.4	98.6	0.0	2.94	0.33	0.63	0.86	3.48	15371	1932	4	0	0	0	0	logfile
✔	7RHG	24460	2024-02-16	2021-07-17	2.88	2.68	—	2.7	0.003	0.57	0.0	0.04	15.36	0.00	2.196	5.80	0.00	1.7	98.3	0.0	0.74	0.69	0.87	3.86	2.8	0.003	0.50	0.0	0.04	17.17	0.00	2.135	8.03	1.06	1.5	98.5	0.0	2.01	0.33	0.69	0.89	3.71	14753	1790	8	0	4	0	0	logfile
✔	7FDG	31542	2024-02-13	2021-07-16	3.69	4.43	—	4.3	0.007	0.85	0.0	0.05	16.00	0.01	2.061	23.62	0.29	7.4	92.6	0.0	-3.38	0.59	0.78	1.13	4.3	0.007	1.19	0.0	0.05	17.48	0.01	1.193	24.33	3.20	4.8	95.2	0.0	-0.33	0.71	0.57	0.75	1.29	6459	791	4	0	5	0	0	logfile
✔	7FDB	31539	2024-02-15	2021-07-16	4.8	5.04	4.73	8.8	0.003	0.57	0.0	0.04	13.84	0.00	1.761	12.61	0.00	7.3	92.6	0.0	-0.78	0.66	0.32	—	4.7	0.004	0.86	0.0	0.05	13.92	0.01	2.005	28.55	0.00	6.4	93.6	0.0	-1.56	2.61	0.77	0.66	—	64497	8295	31	0	0	0	0	logfile
✔	7FD9	31537	2024-02-15	2021-07-16	4.0	4.34	3.85	3.8	0.007	1.28	0.0	0.13	17.54	0.00	2.266	9.05	0.00	6.4	93.6	0.0	-0.84	0.71	0.80	—	3.8	0.004	0.64	0.0	0.04	14.70	0.00	2.186	12.10	1.94	6.4	93.6	0.0	-0.32	0.99	0.72	0.82	—	11476	1534	4	0	4	0	0	logfile
✔	7FDA	31538	2024-02-15	2021-07-16	4.2	3.94	—	3.5	0.003	0.56	0.0	0.04	11.99	0.00	1.871	8.71	0.00	5.8	94.2	0.0	-0.86	0.72	0.63	—	3.1	0.005	0.78	0.0	0.04	13.20	0.00	2.039	17.56	0.03	5.5	94.5	0.0	-0.86	1.81	0.76	0.77	—	64497	8295	31	0	0	0	0	logfile
✔	7FD5	31535	2024-02-23	2021-07-16	2.4	3.12	—	2.9	0.015	1.23	4.0	0.07	11.59	0.01	2.203	5.63	0.51	6.3	93.5	0.2	-3.77	0.71	0.72	3.86	2.9	0.002	0.61	0.0	0.04	13.87	0.00	2.166	6.75	1.27	4.4	95.5	0.0	0.27	0.99	0.74	0.85	2.68	37179	4674	13	0	34	0	0	logfile
✔	7RH9	24458	2024-02-16	2021-07-16	2.61	2.09	—	2.5	0.003	0.57	0.0	0.04	13.27	0.01	2.214	5.79	0.00	1.3	98.7	0.0	1.30	0.64	0.84	4.07	2.5	0.004	0.55	0.0	0.04	15.60	0.00	2.189	9.07	1.24	1.6	98.4	0.0	2.40	0.91	0.64	0.86	3.98	14680	1792	4	0	0	0	0	logfile
✔	7FDK	31546	2024-02-13	2021-07-16	3.69	3.82	—	3.8	0.008	0.88	0.0	0.05	15.52	0.01	2.080	18.21	0.29	13.2	86.7	0.1	-4.54	0.61	0.79	1.60	3.8	0.003	0.69	0.0	0.04	16.53	0.00	2.151	12.96	2.03	7.5	92.4	0.1	-0.82	1.23	0.60	0.76	1.33	6449	791	4	0	3	0	0	logfile
✔	7FDE	31541	2024-02-24	2021-07-16	3.8	4.32	—	3.9	0.002	0.52	0.0	0.04	12.57	0.00	1.886	10.22	0.00	6.2	93.8	0.0	-0.28	0.86	0.83	1.17	3.9	0.003	0.66	0.0	0.04	15.07	0.00	2.110	10.76	1.56	4.9	95.1	0.0	-0.09	1.28	0.87	0.86	1.20	39557	5045	16	0	0	0	0	logfile
✔	7P6K	13230	2024-02-23	2021-07-16	3.8	3.45	3.78	3.2	0.002	0.47	0.0	0.04	11.36	0.00	2.230	9.61	3.89	3.6	96.4	0.0	-0.13	0.73	0.70	1.00	3.2	0.003	0.57	0.0	0.04	14.42	0.00	2.170	15.03	4.03	5.5	94.5	0.0	-0.47	0.63	0.71	0.68	0.94	38106	4650	9	0	0	0	0	logfile
✔	7FD4	31534	2024-02-23	2021-07-16	2.4	3.11	—	2.9	0.011	1.19	5.0	0.07	11.32	0.01	2.212	5.69	0.41	6.5	93.2	0.3	-3.71	0.69	0.66	3.45	2.9	0.002	0.61	0.0	0.04	13.72	0.00	2.180	6.64	1.04	4.9	95.0	0.0	0.33	0.57	0.75	0.85	2.61	37182	4674	13	0	34	0	0	logfile
✔	7FDH	31543	2024-02-13	2021-07-16	3.72	3.93	—	3.8	0.004	0.73	0.0	0.05	14.49	0.00	2.145	13.20	0.29	3.8	96.2	0.0	-2.91	0.72	0.81	2.27	3.8	0.003	0.71	0.0	0.04	15.93	0.00	2.194	12.66	2.73	2.9	97.1	0.0	1.03	0.64	0.71	0.80	1.78	6488	791	4	0	5	0	0	logfile
✔	7P6D	13226	2024-02-13	2021-07-15	3.3	3.43	3.17	3.5	0.003	0.66	0.0	0.05	11.41	0.00	2.575	2.25	0.00	2.7	97.3	0.0	-2.54	0.55	0.77	3.72	3.5	0.006	0.73	0.0	0.05	13.80	0.00	2.088	4.96	4.65	11.7	88.3	0.0	-3.17	2.42	0.47	0.83	4.41	4340	575	5	0	0	0	0	logfile
✔	7P68	13221	2024-02-14	2021-07-15	2.9	3.23	2.85	3.1	0.006	0.90	0.0	0.07	12.92	0.00	2.430	4.45	0.00	3.3	96.7	0.0	-3.06	0.46	0.80	3.76	3.1	0.004	0.79	0.0	0.05	16.05	0.00	2.115	11.85	5.59	5.8	94.2	0.0	-3.31	1.48	0.41	0.83	3.79	8120	1080	10	0	0	0	0	logfile
✔	7P6A	13223	2024-02-13	2021-07-15	1.9	1.91	1.88	1.9	0.004	0.72	0.0	0.06	12.30	0.01	2.247	3.33	0.00	3.8	96.2	0.0	-3.07	0.51	0.86	7.13	1.9	0.003	0.63	0.0	0.05	14.19	0.00	2.224	4.99	0.43	4.5	95.5	0.0	-2.64	0.82	0.54	0.89	7.56	4166	540	10	0	0	76	0	logfile
✔	7P6C	13225	2024-02-14	2021-07-15	2.5	2.04	2.40	2.2	0.005	0.80	0.0	0.06	15.34	0.00	2.284	2.77	0.43	2.8	97.2	0.0	-3.05	0.43	0.86	7.56	2.2	0.005	0.66	0.0	0.05	17.12	0.00	2.232	4.57	1.72	3.7	96.3	0.0	-2.67	0.91	0.44	0.89	7.25	8120	1080	10	0	0	0	0	logfile
✔	7P5Z	13211	2024-02-18	2021-07-15	3.3	3.83	3.32	3.6	0.003	0.58	0.0	0.04	15.55	0.00	1.475	7.69	0.03	3.7	96.2	0.1	0.31	0.64	0.78	2.13	3.6	0.003	0.58	0.0	0.04	16.78	0.00	1.820	8.67	1.49	4.3	95.7	0.1	0.36	1.21	0.65	0.80	2.04	134187	8215	29	106	31	0	66786	logfile
✔	7P60	13213	2024-02-23	2021-07-15	3.8	3.10	3.75	3.2	0.004	0.55	0.0	0.04	13.06	0.00	2.130	15.09	5.44	3.9	96.1	0.0	-0.45	0.72	0.69	1.05	2.9	0.004	0.65	0.0	0.04	15.73	0.00	2.125	17.79	3.78	5.2	94.8	0.0	-0.87	1.56	0.70	0.68	0.85	38406	4680	9	0	0	0	0	logfile
✔	7RGi	24450	2024-02-24	2021-07-15	3.6	3.55	—	3.6	0.011	1.78	4.0	0.09	15.12	0.01	2.432	1.57	1.84	6.1	93.8	0.1	-2.07	0.57	0.78	2.45	3.5	0.004	0.73	0.0	0.04	15.70	0.00	2.033	10.51	2.85	6.7	93.3	0.0	-0.93	2.11	0.56	0.77	1.84	43712	2856	16	0	16	0	21752	logfile

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