Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7RJC	24484	2024-02-20	2021-07-20	3.3	3.46	—	3.4	0.007	0.82	2.0	0.05	13.58	0.00	1.018	11.43	0.20	4.6	95.2	0.2	0.13	0.56	0.68	3.90	3.4	0.003	0.57	0.0	0.04	15.33	0.00	1.970	9.39	1.54	3.8	96.2	0.0	0.85	0.74	0.67	0.81	3.68	28373	1907	13	0	6	0	13664	logfile
✔	7RJA	24482	2024-02-14	2021-07-20	3.0	3.57	—	3.5	0.006	0.65	0.0	0.04	13.44	0.00	1.839	9.54	0.07	4.1	95.9	0.0	0.19	0.65	0.78	3.99	3.5	0.004	0.55	0.0	0.04	15.34	0.00	1.940	8.74	1.14	4.0	96.0	0.0	0.97	1.13	0.64	0.79	3.55	57452	3812	24	0	12	0	28034	logfile
✔	7P7T	13244	2024-02-27	2021-07-20	2.9	3.42	2.91	2.2	0.005	0.40	0.0	0.04	22.61	0.01	1.679	4.44	0.66	2.6	97.4	0.0	0.93	0.89	0.91	3.72	2.1	0.007	0.68	0.0	0.04	22.60	0.01	1.727	10.24	2.68	3.5	96.5	0.0	0.50	0.41	0.89	0.92	3.45	149080	6097	68	4697	307	1	0	logfile
✔	7FED	31553	2024-02-25	2021-07-19	3.55	3.83	—	3.8	0.006	0.81	0.0	0.06	13.87	0.00	2.394	10.94	0.63	3.2	96.8	0.0	-1.53	0.75	0.81	2.47	3.8	0.004	0.73	2.0	0.04	15.34	0.00	1.821	10.18	0.50	3.7	96.3	0.0	0.09	0.93	0.74	0.83	1.50	48150	6048	18	0	0	0	0	logfile
✔	7P7L	13239	2024-02-23	2021-07-19	3.0	2.79	—	2.8	0.005	0.79	0.0	1.47	15.51	0.01	2.203	6.09	1.30	2.5	97.5	0.0	-0.49	0.90	0.89	2.97	2.9	0.012	2.20	0.0	0.44	15.63	0.00	2.155	9.85	1.88	2.7	97.3	0.0	1.04	1.10	0.90	0.88	2.98	37587	4710	24	0	32	0	0	logfile
✔	7P7M	13240	2024-02-23	2021-07-19	3.2	3.30	—	3.0	0.005	0.87	0.0	1.47	14.90	0.01	2.214	5.31	0.39	2.4	97.6	0.0	-0.55	0.91	0.87	2.27	3.0	0.012	2.21	0.0	0.44	15.21	0.00	2.096	9.94	1.58	3.0	97.0	0.0	1.12	0.26	0.91	0.87	2.33	37390	4720	25	0	26	0	0	logfile
✔	7RHX	24470	2024-02-19	2021-07-19	3.23	3.49	3.31	3.4	0.004	0.79	0.0	0.05	20.66	0.01	2.289	1.05	0.00	2.0	98.0	0.0	-0.38	0.75	0.84	2.43	3.4	0.004	0.61	0.0	0.04	21.90	0.00	2.161	3.03	0.84	3.3	96.7	0.0	1.27	1.07	0.76	0.87	1.64	25787	1288	8	168	0	0	12159	logfile
✔	7RHY	24471	2024-02-13	2021-07-19	3.91	4.12	4.00	4.0	0.005	0.80	0.0	0.05	21.98	0.01	2.404	3.31	0.80	2.0	98.0	0.0	-1.06	0.74	0.76	2.28	4.0	0.003	0.62	0.0	0.04	23.04	0.00	2.282	5.99	2.40	4.0	96.0	0.0	1.79	0.91	0.74	0.77	1.98	6350	301	2	49	0	0	2957	logfile
✔	7Ri5	24474	2024-02-15	2021-07-19	4.0	4.07	—	4.0	0.007	1.04	0.0	0.05	15.00	0.01	1.904	22.74	0.31	13.0	86.8	0.2	-2.74	0.71	0.75	—	4.0	0.005	0.80	0.0	0.05	16.75	0.00	2.168	17.03	2.59	12.7	87.1	0.2	-2.02	0.56	0.71	0.74	—	11866	1520	5	0	0	0	0	logfile
✔	7P7K	13238	2024-02-23	2021-07-19	3.1	2.77	—	2.7	0.006	0.71	0.0	1.48	13.06	0.01	2.238	4.98	2.21	2.5	97.5	0.0	-0.42	0.90	0.89	3.67	2.6	0.011	2.20	0.0	0.45	14.57	0.00	2.155	8.39	2.13	2.2	97.8	0.0	1.39	1.13	0.90	0.88	3.19	36531	4630	23	0	23	0	0	logfile
✔	7P7J	13237	2024-02-23	2021-07-19	2.7	2.61	—	2.3	0.005	0.77	0.0	1.47	15.31	0.01	2.212	4.92	1.25	2.4	97.5	0.0	-0.28	0.91	0.90	3.67	2.4	0.012	2.19	0.0	0.45	15.41	0.00	2.069	8.27	1.79	2.3	97.7	0.0	1.20	0.24	0.91	0.89	3.60	37448	4719	24	0	28	0	0	logfile
✔	7FEC	31552	2024-02-19	2021-07-19	3.64	3.94	—	3.9	0.004	0.83	0.0	0.06	14.62	0.00	2.217	14.41	0.34	2.7	97.3	0.0	-1.99	0.76	0.83	2.05	3.9	0.005	0.86	0.0	0.05	16.23	0.00	1.934	11.77	1.53	4.8	95.2	0.0	-0.33	0.39	0.74	0.80	1.97	24075	3024	9	0	0	0	0	logfile
✔	7FEB	31551	2024-02-19	2021-07-19	2.11	2.54	—	2.6	0.004	0.65	0.0	0.05	15.91	0.01	2.211	11.24	0.30	1.5	98.5	0.0	0.07	0.75	0.82	3.11	2.6	0.004	0.62	0.0	0.04	16.39	0.01	2.123	8.89	2.98	1.5	98.5	0.0	0.63	1.94	0.75	0.85	3.16	24075	3024	9	0	0	0	0	logfile
✔	7RHZ	24472	2024-02-15	2021-07-19	4.48	7.32	5.01	7.0	0.020	1.62	32.0	0.18	21.17	0.01	2.015	9.11	0.59	3.5	96.5	0.0	-1.60	0.85	0.71	—	7.0	0.003	0.65	0.0	0.04	21.29	0.00	2.003	12.75	0.00	5.1	94.9	0.0	0.35	2.22	0.88	0.77	—	12550	615	4	88	0	0	5875	logfile
✔	7Ri4	24473	2024-02-15	2021-07-19	3.4	3.80	—	3.7	0.003	0.74	0.0	0.04	17.06	0.00	2.238	9.59	3.70	13.8	86.0	0.2	-5.39	0.71	0.77	0.92	3.7	0.003	0.73	0.0	0.04	17.96	0.00	2.172	10.59	6.01	15.3	84.7	0.1	-3.20	0.49	0.70	0.79	1.64	12248	1578	6	0	0	0	0	logfile
✔	7P6U	13232	2024-02-23	2021-07-18	3.9	4.03	—	3.9	0.007	1.41	7.0	0.08	13.66	0.01	2.058	7.46	0.03	6.3	93.7	0.1	-4.12	0.79	0.71	0.42	3.9	0.003	0.71	0.0	0.04	15.11	0.01	2.096	21.25	1.81	5.4	94.6	0.0	-0.95	1.64	0.81	0.74	0.48	36940	4632	12	0	12	0	0	logfile
✔	7RHR	24467	2024-02-13	2021-07-18	3.0	3.18	—	3.1	0.006	0.84	0.0	0.05	11.89	0.01	2.131	9.63	0.00	5.1	94.8	0.1	-0.44	0.68	0.81	3.54	3.1	0.003	0.59	0.0	0.04	14.57	0.00	2.141	6.21	2.17	4.5	95.4	0.1	0.90	0.47	0.68	0.83	2.65	7820	974	3	0	7	0	0	logfile
✔	7P6X	13233	2024-02-20	2021-07-18	4.1	5.06	4.15	4.4	0.017	1.83	6.0	0.10	12.65	0.01	2.065	12.81	0.92	4.1	95.9	0.0	-3.80	0.81	0.78	—	4.4	0.002	0.58	0.0	0.04	12.42	0.00	2.024	7.89	0.00	3.3	96.7	0.0	0.79	1.04	0.80	0.81	—	28474	1813	9	0	3	0	14395	logfile
✔	7RHS	24468	2024-02-16	2021-07-18	2.93	3.46	—	3.4	0.006	0.96	0.0	0.06	13.64	0.01	2.318	3.50	0.06	2.8	97.2	0.0	-3.90	0.62	0.85	2.52	3.4	0.003	0.57	0.0	0.04	15.34	0.00	2.228	7.17	1.67	2.7	97.3	0.0	1.93	0.95	0.65	0.87	2.53	14767	1804	8	0	4	0	0	logfile
✔	7RHQ	24466	2024-02-14	2021-07-18	3.53	3.57	—	3.5	0.009	1.06	0.0	0.06	10.92	0.01	2.153	3.32	0.09	5.7	94.3	0.1	-5.45	0.74	0.85	3.27	3.5	0.003	0.80	0.0	0.05	14.58	0.00	2.128	10.16	2.53	4.5	95.4	0.1	0.01	1.27	0.74	0.84	2.33	10499	1305	8	0	15	0	0	logfile

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