Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7P8N	13254	2024-02-18	2021-07-23	2.8	2.25	2.70	2.4	0.003	0.51	0.0	0.04	14.49	0.00	1.936	4.40	0.00	3.8	96.1	0.1	0.45	0.68	0.80	3.30	2.4	0.003	0.58	0.0	0.04	17.10	0.00	2.164	6.75	1.72	3.6	96.4	0.1	0.18	0.35	0.69	0.84	3.17	21429	2681	18	0	23	356	0	logfile
✔	7RK6	24493	2024-02-20	2021-07-22	2.91	3.53	—	3.3	0.005	0.63	0.0	0.04	13.96	0.00	2.216	9.72	0.00	4.3	95.7	0.0	-0.28	0.78	0.80	2.05	3.3	0.003	0.67	0.0	0.04	15.19	0.00	2.174	10.42	1.32	4.3	95.7	0.0	0.05	0.42	0.77	0.80	1.98	28615	3564	12	0	27	4	0	logfile
✔	7RKH	24497	2024-02-24	2021-07-22	2.8	2.83	—	2.9	0.014	1.98	4.0	0.11	15.27	0.02	1.917	0.90	1.64	2.9	97.1	0.0	-0.45	0.58	0.73	3.48	2.8	0.003	0.55	0.0	0.05	17.00	0.00	1.826	5.25	2.20	2.8	97.2	0.0	0.71	1.32	0.60	0.79	3.49	35352	2236	8	0	16	0	17564	logfile
✔	7RKM	24500	2024-02-14	2021-07-22	3.5	3.62	—	3.5	0.005	0.97	0.0	0.06	12.32	0.00	2.181	7.47	0.00	3.7	96.3	0.0	-1.13	0.74	0.83	3.32	3.5	0.003	0.63	0.0	0.04	14.29	0.00	2.137	13.19	1.45	3.9	96.1	0.0	-0.33	0.38	0.74	0.83	2.63	9491	1201	6	0	1	0	0	logfile
✔	7RKV	24504	2024-02-21	2021-07-22	3.45	4.38	—	3.9	0.009	1.34	18.0	0.08	11.81	0.01	1.829	14.29	0.54	3.6	96.4	0.0	0.06	0.76	0.54	2.12	3.9	0.004	0.62	0.0	0.04	12.71	0.00	2.197	8.36	1.15	3.2	96.8	0.0	0.99	1.17	0.83	0.80	2.36	31357	4278	12	0	39	0	0	logfile
✔	7RKX	24506	2024-02-14	2021-07-22	3.1	3.43	3.11	3.4	0.005	0.71	0.0	0.05	12.43	0.01	2.137	4.07	0.00	3.9	96.1	0.0	-0.60	0.72	0.88	4.25	3.4	0.003	0.58	0.0	0.04	14.83	0.00	2.158	5.03	2.61	3.5	96.4	0.1	0.58	0.35	0.67	0.88	3.27	8559	1126	5	0	0	0	0	logfile
✔	7RKN	24501	2024-02-14	2021-07-22	3.6	3.80	—	3.7	0.004	0.97	0.0	0.06	12.67	0.01	2.206	7.90	0.00	4.7	95.3	0.0	-2.17	0.74	0.81	2.81	3.7	0.004	0.66	0.0	0.04	15.09	0.00	2.091	14.78	2.36	4.3	95.7	0.0	-1.50	0.42	0.74	0.84	2.37	9393	1201	6	0	0	0	0	logfile
✔	7RL0	24512	2024-02-18	2021-07-22	2.8	2.88	—	2.9	0.014	2.04	48.0	0.11	15.07	0.02	1.912	0.47	1.08	2.5	97.3	0.2	-1.35	0.40	0.48	2.19	2.9	0.007	0.77	0.0	0.05	17.23	0.01	1.760	12.16	2.22	3.8	96.0	0.2	0.03	1.16	0.52	0.72	2.10	106080	6708	24	0	48	0	52716	logfile
✔	7RJT	24490	2024-02-20	2021-07-21	2.93	3.41	—	3.3	0.005	0.59	0.0	0.04	14.15	0.00	2.251	4.92	0.00	2.6	97.4	0.0	0.61	0.75	0.80	2.98	3.3	0.002	0.46	0.0	0.04	15.01	0.00	2.292	4.35	0.98	2.3	97.7	0.0	0.89	0.34	0.76	0.82	2.61	28972	3608	12	0	28	24	0	logfile
✔	7FEP	31559	2024-02-23	2021-07-21	3.1	3.61	—	3.5	0.015	1.26	0.0	0.11	14.37	0.00	2.396	4.95	2.53	9.6	89.9	0.5	-5.30	0.47	0.64	3.66	3.5	0.003	1.44	16.0	0.25	16.25	0.00	1.325	7.20	1.36	6.3	93.3	0.4	-1.57	0.63	0.68	0.83	3.14	40381	2730	28	0	14	0	19353	logfile
✔	7FET	31563	2024-02-19	2021-07-21	3.7	4.04	—	3.9	0.006	0.82	0.0	0.05	15.26	0.01	2.102	9.93	0.08	13.9	86.0	0.1	-3.35	0.79	0.81	2.39	3.9	0.003	0.63	0.0	0.04	15.50	0.00	2.137	7.89	1.83	9.4	90.5	0.1	-1.98	1.47	0.79	0.82	1.94	24023	3003	15	0	41	0	0	logfile
✔	7FEM	31557	2024-02-20	2021-07-21	4.1	4.44	—	4.1	0.014	1.09	0.0	0.06	14.63	0.01	2.008	20.18	0.00	11.0	88.8	0.1	-3.86	0.83	0.81	—	4.1	0.011	0.72	0.0	0.05	13.46	0.00	1.989	14.08	0.03	6.6	93.3	0.1	-1.80	1.51	0.84	0.83	—	28977	3579	23	0	59	0	0	logfile
✔	7FEQ	31560	2024-02-17	2021-07-21	3.2	3.55	—	3.6	0.010	1.20	0.0	0.07	14.49	0.01	2.172	1.94	0.19	12.9	86.6	0.6	-6.13	0.47	0.75	3.40	3.6	0.002	0.64	0.0	0.04	16.41	0.00	2.188	5.57	0.78	7.8	92.1	0.1	-3.01	1.04	0.66	0.86	2.40	19236	2520	14	0	0	0	0	logfile
✔	7FES	31562	2024-02-22	2021-07-21	3.4	3.53	—	4.2	0.011	1.21	5.0	0.10	15.70	0.01	1.102	14.90	2.30	17.7	80.8	1.5	-5.10	0.70	0.79	1.36	3.4	0.004	0.77	5.0	0.09	17.33	0.00	2.053	13.84	2.97	13.4	86.5	0.2	-2.92	2.43	0.71	0.81	1.40	33873	2198	14	0	0	0	17095	logfile
✔	7FER	31561	2024-02-23	2021-07-21	3.4	3.82	—	4.1	0.015	1.25	0.0	0.07	14.27	0.01	2.088	12.13	2.03	8.6	90.3	1.0	-5.31	0.67	0.80	2.34	4.0	0.003	0.78	1.0	0.09	16.27	0.00	1.492	11.12	1.56	8.3	91.5	0.2	-1.55	1.22	0.70	0.86	1.74	36736	2436	28	0	14	0	18142	logfile
✔	7RJA	24482	2024-02-14	2021-07-20	3.0	3.57	—	3.5	0.006	0.65	0.0	0.04	13.44	0.00	1.839	9.54	0.07	4.1	95.9	0.0	0.19	0.65	0.78	3.99	3.5	0.004	0.55	0.0	0.04	15.34	0.00	1.940	8.74	1.14	4.0	96.0	0.0	0.97	1.13	0.64	0.79	3.55	57452	3812	24	0	12	0	28034	logfile
✔	7RJD	24485	2024-02-20	2021-07-20	3.2	3.33	—	3.3	0.007	0.84	4.0	0.05	13.57	0.00	1.342	11.33	0.27	4.5	95.0	0.4	0.07	0.48	0.58	2.00	3.3	0.006	0.63	0.0	0.04	15.98	0.00	1.883	10.02	2.48	4.5	95.5	0.0	0.07	1.56	0.68	0.82	3.61	28415	1912	13	0	6	0	13664	logfile
✔	7RJB	24483	2024-02-20	2021-07-20	3.2	3.44	—	3.4	0.007	0.82	4.0	0.05	13.60	0.00	1.840	11.85	0.27	4.3	95.3	0.3	0.14	0.55	0.67	3.70	3.4	0.004	0.57	0.0	0.04	15.42	0.00	2.003	10.64	1.14	4.3	95.7	0.0	0.74	0.79	0.65	0.79	3.91	28373	1907	13	0	6	0	13664	logfile
✔	7P7Q	13241	2024-02-29	2021-07-20	2.4	2.95	2.36	2.3	0.005	1.17	0.0	0.07	23.29	0.01	1.700	4.78	0.76	2.6	97.3	0.0	0.28	0.89	0.91	4.22	2.3	0.006	0.67	0.0	0.05	22.77	0.01	1.674	8.97	2.41	2.8	97.2	0.0	0.72	1.25	0.90	0.93	3.97	151202	6096	114	4625	360	3601	0	logfile
✔	7P7U	13245	2024-02-21	2021-07-20	3.1	3.56	3.06	2.0	0.004	0.52	0.0	0.05	22.67	0.00	1.724	6.20	0.42	2.6	97.4	0.1	1.02	0.89	0.90	3.54	2.0	0.005	0.61	1.0	0.04	22.62	0.00	1.853	10.78	2.70	2.7	97.3	0.0	0.83	0.36	0.89	0.91	3.11	139826	5337	64	4549	344	0	0	logfile

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