Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7P4i	13193	2024-02-14	2021-07-11	4.2	5.62	—	4.1	0.003	0.76	0.0	0.04	13.10	0.00	2.168	11.83	0.00	5.7	94.3	0.0	-0.54	0.61	0.84	—	4.2	0.003	0.71	0.0	0.04	13.67	0.00	2.237	11.32	0.00	5.3	94.7	0.0	0.65	0.93	0.61	0.86	—	9510	1284	3	0	0	0	0	logfile
✔	7RDQ	24424	2024-02-20	2021-07-10	3.0	2.49	—	2.9	0.003	0.61	0.0	0.04	15.54	0.01	2.071	7.24	0.21	2.0	98.0	0.0	0.50	0.70	0.77	2.55	2.9	0.004	0.60	0.0	0.04	17.99	0.01	1.940	8.04	2.09	2.4	97.6	0.0	0.54	1.13	0.72	0.81	2.35	28213	3368	12	73	7	0	0	logfile
✔	7FBi	31515	2024-02-13	2021-07-10	3.9	4.51	—	4.4	0.007	1.18	3.0	0.07	15.51	0.01	2.095	10.67	0.35	14.6	85.3	0.1	-5.16	0.40	0.79	1.90	4.4	0.007	0.91	0.0	0.05	16.93	0.01	2.066	20.96	5.36	17.1	82.8	0.1	-3.71	0.59	0.41	0.80	1.97	7777	1005	5	0	0	0	0	logfile
✔	7P48	13191	2024-02-20	2021-07-09	2.9	2.80	2.94	2.8	0.020	1.48	19.0	0.07	24.24	0.01	1.822	12.33	0.92	13.5	86.2	0.4	-5.47	0.77	0.78	2.69	2.8	0.005	0.76	0.0	0.04	23.45	0.01	1.975	6.89	4.07	7.9	92.0	0.1	-2.18	0.55	0.80	0.82	2.67	138826	5925	57	4329	7	0	0	logfile
✔	7RD6	24413	2024-02-13	2021-07-09	3.25	3.44	—	3.4	0.004	0.79	0.0	0.05	14.65	0.00	2.183	9.73	0.00	5.3	94.7	0.0	-1.73	0.56	0.70	2.23	3.4	0.003	0.64	0.0	0.04	16.27	0.00	2.095	13.69	2.29	5.4	94.6	0.0	-1.15	0.41	0.57	0.72	2.09	7396	929	1	0	2	0	0	logfile
✔	7RD7	24414	2024-02-13	2021-07-09	3.08	3.26	—	3.3	0.005	1.33	0.0	0.05	13.97	0.01	1.902	8.98	0.00	7.1	92.9	0.0	-1.78	0.59	0.74	2.28	3.3	0.003	0.89	0.0	0.04	16.06	0.00	2.025	11.73	2.29	6.4	93.6	0.0	-0.92	0.32	0.60	0.77	2.02	7400	929	1	0	2	0	0	logfile
✔	7P40	13190	2024-02-20	2021-07-09	3.5	3.98	—	3.9	0.003	0.53	0.0	0.04	11.69	0.00	2.221	7.22	0.24	3.4	96.6	0.0	0.85	0.72	0.71	1.96	3.9	0.002	0.59	0.0	0.04	13.63	0.00	2.177	7.82	1.17	3.3	96.7	0.0	0.75	3.34	0.74	0.77	1.76	26466	3687	9	0	0	0	0	logfile
✔	7FB4	31514	2024-02-18	2021-07-08	3.4	4.08	—	3.9	0.005	0.71	0.0	0.05	14.05	0.00	2.164	12.36	0.08	9.3	90.7	0.0	-4.07	0.79	0.82	2.10	3.9	0.003	0.61	0.0	0.04	15.54	0.00	2.141	10.21	2.12	7.2	92.8	0.0	-1.49	0.46	0.77	0.81	1.72	21411	2746	3	0	0	0	0	logfile
✔	7FB1	31512	2024-02-19	2021-07-08	3.7	4.45	—	4.1	0.007	0.83	0.0	0.05	14.19	0.00	2.091	22.96	0.07	13.5	86.5	0.0	-4.74	0.84	0.84	1.98	4.1	0.003	0.63	0.0	0.04	15.46	0.00	2.121	15.32	2.81	8.6	91.4	0.0	-1.82	1.42	0.83	0.82	1.81	24168	3094	3	0	0	0	0	logfile
✔	7FB0	31511	2024-02-18	2021-07-08	3.4	4.00	—	3.9	0.010	0.88	0.0	0.05	14.09	0.01	1.931	19.74	0.47	11.5	88.5	0.0	-4.69	0.77	0.80	1.95	3.9	0.004	0.62	0.0	0.04	15.34	0.00	2.090	10.79	2.73	5.5	94.5	0.0	-1.24	0.49	0.77	0.80	1.66	22876	2926	3	0	0	0	0	logfile
✔	7P3Q	13182	2024-02-14	2021-07-08	3.12	3.23	3.11	3.2	0.009	1.34	0.0	0.07	18.91	0.01	2.218	11.33	0.40	4.5	95.5	0.0	0.44	0.68	0.81	1.87	3.2	0.003	0.60	0.0	0.04	17.03	0.00	2.104	15.14	1.60	4.1	95.9	0.0	1.02	0.81	0.69	0.86	1.82	9632	1176	16	0	24	0	0	logfile
✔	7P3K	13180	2024-02-21	2021-07-08	2.9	2.99	—	2.9	0.007	0.83	1.0	0.05	22.41	0.02	1.871	4.21	0.09	3.5	96.4	0.1	-0.61	0.87	0.85	2.82	2.9	0.003	0.65	0.0	0.04	22.65	0.01	1.850	8.48	2.38	3.7	96.3	0.1	0.40	0.62	0.90	0.90	2.93	140054	5587	63	4469	311	0	0	logfile
✔	7FB3	31513	2024-02-18	2021-07-08	3.1	3.73	—	3.7	0.003	0.65	0.0	0.04	14.25	0.00	2.114	9.15	0.23	8.2	91.8	0.0	-4.11	0.74	0.81	2.06	3.6	0.003	0.59	0.0	0.04	15.89	0.00	2.103	8.69	1.91	6.5	93.5	0.0	-1.35	1.43	0.72	0.80	1.96	22920	2936	3	0	0	0	0	logfile
✔	7P3W	13186	2024-02-23	2021-07-08	4.3	5.72	—	4.5	0.006	0.87	3.0	0.05	14.04	0.00	2.074	27.29	0.05	6.3	93.7	0.0	-0.91	0.87	0.85	—	4.5	0.003	0.62	0.0	0.04	14.20	0.00	2.000	15.41	0.00	4.4	95.6	0.0	0.56	0.56	0.87	0.84	—	37149	4900	26	0	8	0	0	logfile
✔	7P3N	13181	2024-02-23	2021-07-08	4.6	6.89	—	4.7	0.005	0.85	1.0	0.05	13.80	0.00	1.777	31.13	0.21	7.4	92.4	0.1	-1.16	0.87	0.83	—	4.7	0.003	0.66	0.0	0.04	14.03	0.00	1.927	21.85	0.05	5.4	94.6	0.0	-0.13	0.57	0.87	0.83	—	37114	4895	26	0	8	0	0	logfile
✔	7P3R	13185	2024-02-13	2021-07-08	3.65	3.16	3.57	3.5	0.006	0.81	1.0	0.05	13.66	0.01	2.306	1.88	0.28	2.7	97.3	0.0	-3.67	0.30	0.70	1.05	3.5	0.004	0.58	0.0	0.04	14.87	0.00	2.161	4.97	5.90	2.3	97.7	0.0	3.51	0.55	0.29	0.64	1.05	7738	1338	4	0	0	0	0	logfile
✔	7FAP	31504	2024-02-14	2021-07-07	3.4	2.53	—	3.4	0.011	1.05	1.0	0.07	20.81	0.00	2.195	10.64	0.80	5.3	94.6	0.1	-1.03	0.71	0.69	1.56	3.4	0.003	0.62	0.0	0.04	18.00	0.00	2.124	9.71	2.41	3.2	96.8	0.0	-0.05	1.18	0.74	0.74	1.24	10445	1236	2	0	12	0	0	logfile
✔	7P37	13178	2024-02-16	2021-07-07	2.96	3.18	3.03	3.2	0.005	0.85	0.0	0.05	16.90	0.00	2.280	7.21	0.00	2.4	97.6	0.0	1.79	0.68	0.76	2.89	3.2	0.002	0.48	0.0	0.04	16.89	0.00	2.141	8.72	1.59	1.8	98.2	0.0	1.45	0.92	0.69	0.81	2.88	14496	1764	24	0	36	0	0	logfile
✔	7P3F	13179	2024-02-13	2021-07-07	3.31	3.46	3.33	3.4	0.009	1.32	6.0	0.08	25.95	0.01	2.242	7.35	1.59	4.3	95.7	0.0	-1.22	0.74	0.80	2.05	3.4	0.004	0.56	0.0	0.03	25.24	0.00	2.122	10.35	3.37	3.8	96.2	0.0	-0.28	0.89	0.74	0.83	2.58	6878	588	10	100	12	0	0	logfile
✔	7FAS	31505	2024-02-14	2021-07-07	3.6	2.95	—	3.7	0.002	0.52	0.0	0.04	15.63	0.00	2.193	9.10	0.09	4.1	95.9	0.0	0.85	0.72	0.73	0.88	3.7	0.004	0.54	0.0	0.04	17.45	0.00	2.160	10.15	2.05	5.0	95.0	0.0	0.91	0.41	0.73	0.75	0.89	10173	1229	1	0	0	0	0	logfile

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