Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7P2P	13171	2024-02-13	2021-07-06	4.9	4.40	5.09	4.3	0.005	1.10	0.0	0.07	13.15	0.01	2.325	4.27	0.19	8.1	91.9	0.0	-3.94	0.76	0.66	—	4.2	0.003	0.78	0.0	0.05	12.54	0.00	2.192	14.58	0.19	6.2	93.8	0.0	-1.41	1.04	0.78	0.72	—	4783	587	5	0	5	0	0	logfile
✔	7FAF	31503	2024-02-22	2021-07-06	3.69	3.84	—	3.7	0.011	1.81	37.0	0.10	18.61	0.01	1.315	23.38	13.67	10.3	88.8	0.9	-3.17	0.78	0.67	1.18	3.7	0.007	0.90	2.0	0.05	16.72	0.01	1.804	16.36	3.35	6.3	93.5	0.1	-1.33	1.14	0.85	0.81	1.58	33288	4298	9	0	0	0	0	logfile
✔	7FAE	31502	2024-02-22	2021-07-06	3.65	3.81	—	3.6	0.010	1.04	5.0	0.07	16.58	0.01	1.041	15.94	7.89	9.2	90.1	0.7	-3.13	0.81	0.72	1.67	3.6	0.003	0.75	0.0	0.05	15.92	0.00	2.159	12.40	3.54	5.4	94.4	0.1	-0.89	0.96	0.86	0.81	1.91	34352	4318	29	0	62	0	0	logfile
✔	7P2Y	13174	2024-02-23	2021-07-06	3.1	3.84	—	3.5	0.004	0.70	0.0	0.04	12.08	0.00	2.088	10.47	0.08	3.8	96.2	0.0	0.12	0.82	0.87	2.60	3.5	0.003	0.62	0.0	0.04	13.70	0.00	1.962	7.74	0.94	3.5	96.5	0.0	0.78	0.97	0.82	0.88	1.95	37172	4904	30	0	9	3	0	logfile
✔	7RBT	24401	2024-02-15	2021-07-06	3.08	2.86	—	2.9	0.007	0.76	0.0	0.05	14.73	0.00	2.093	18.60	0.70	9.1	90.9	0.0	-2.82	0.59	0.76	2.17	3.0	0.003	0.70	0.0	0.04	16.78	0.00	2.093	11.51	3.41	3.9	96.1	0.0	-0.82	0.48	0.59	0.76	2.00	10881	1386	7	0	1	0	0	logfile
✔	7P2Q	13172	2024-02-13	2021-07-06	4.9	4.54	—	4.3	0.004	0.84	0.0	0.05	11.11	0.01	2.264	4.17	0.00	5.0	95.0	0.0	-3.09	0.77	0.72	—	4.3	0.003	0.75	0.0	0.04	12.26	0.00	2.174	14.19	0.00	4.8	95.2	0.0	-0.30	1.55	0.80	0.74	—	4780	587	5	0	5	0	0	logfile
✔	7RB9	24400	2024-02-16	2021-07-05	3.76	4.01	3.83	3.9	0.003	0.57	0.0	0.04	14.69	0.00	2.228	9.31	0.00	3.2	96.8	0.0	0.60	0.59	0.85	1.62	3.9	0.004	0.62	0.0	0.04	16.04	0.00	1.938	9.17	1.51	4.4	95.6	0.0	0.41	2.15	0.59	0.87	1.95	14193	1786	7	0	6	0	0	logfile
✔	7F9W	31499	2024-02-13	2021-07-05	3.2	3.72	—	3.6	0.005	0.68	0.0	0.04	12.99	0.00	2.114	9.28	0.63	4.5	95.5	0.0	0.24	0.76	0.80	3.40	3.6	0.005	0.70	0.0	0.04	15.54	0.00	2.105	9.88	2.96	5.0	95.0	0.0	0.28	0.48	0.77	0.82	2.85	4217	547	3	0	0	0	0	logfile
✔	7RB2	24392	2024-02-22	2021-07-05	3.27	3.28	—	3.2	0.008	0.74	0.0	0.05	14.45	0.00	2.075	7.71	0.33	5.1	94.9	0.0	-1.06	0.74	0.85	4.44	3.2	0.002	0.51	0.0	0.04	15.53	0.00	2.266	5.14	0.49	2.0	98.0	0.0	0.35	3.65	0.76	0.84	3.60	16386	2082	6	0	0	0	0	logfile
✔	7F9Y	31500	2024-02-14	2021-07-05	2.9	2.26	—	2.2	0.003	0.55	0.0	0.04	12.55	0.00	1.951	5.33	0.00	1.2	98.8	0.0	1.79	0.73	0.74	2.95	2.0	0.004	0.58	0.0	0.04	15.72	0.00	2.216	6.40	2.98	2.2	97.8	0.0	0.83	0.49	0.77	0.80	3.18	8354	1051	8	0	3	0	0	logfile
✔	7RB8	24399	2024-02-16	2021-07-05	3.63	3.84	3.65	3.8	0.004	0.68	0.0	0.05	14.22	0.00	1.921	8.73	0.07	5.4	94.6	0.0	-0.17	0.59	0.86	2.65	3.8	0.002	0.60	0.0	0.04	15.60	0.00	2.202	7.81	0.85	3.9	96.1	0.0	0.49	0.46	0.60	0.87	2.09	14226	1786	8	0	8	0	0	logfile
✔	7RB0	24391	2024-02-22	2021-07-05	2.98	3.22	—	3.2	0.009	0.76	0.0	0.05	13.47	0.00	2.115	13.03	0.00	4.9	95.1	0.0	-1.42	0.72	0.82	3.78	3.2	0.002	0.62	0.0	0.05	16.10	0.00	2.157	9.86	1.54	3.6	96.4	0.0	-0.34	0.45	0.75	0.85	3.31	16350	2082	6	0	0	0	0	logfile
✔	7F9Z	31501	2024-02-15	2021-07-05	3.2	2.27	—	2.1	0.005	0.56	3.0	0.04	13.18	0.00	1.866	7.66	0.00	1.9	98.1	0.0	1.51	0.69	0.68	1.75	2.1	0.003	0.59	0.0	0.04	15.77	0.00	2.179	11.99	2.21	2.7	97.3	0.0	0.68	1.55	0.72	0.74	2.12	9982	1264	7	0	7	0	0	logfile
✔	7RAZ	24390	2024-02-14	2021-07-05	3.4	4.46	3.18	3.9	0.004	0.87	0.0	0.04	13.68	0.00	2.201	11.69	0.00	2.3	97.7	0.0	1.13	0.79	0.85	2.19	4.0	0.003	0.69	0.0	0.04	14.02	0.00	2.139	12.81	2.08	2.9	97.1	0.0	1.11	0.37	0.79	0.87	2.05	10472	1330	14	0	7	0	0	logfile
✔	7F92	31495	2024-02-18	2021-07-03	3.1	3.23	3.05	3.2	0.008	1.29	0.0	0.05	16.75	0.01	2.271	0.63	2.29	3.0	97.0	0.0	-6.40	0.75	0.90	3.09	3.2	0.002	0.53	0.0	0.03	15.33	0.00	2.288	1.12	1.81	1.2	98.8	0.0	1.39	0.30	0.72	0.90	2.63	21240	2352	36	0	132	264	0	logfile
✔	7F94	31497	2024-02-17	2021-07-03	3.6	3.78	—	3.8	0.006	0.92	0.0	0.05	14.36	0.01	2.268	3.62	0.57	4.5	95.5	0.0	-3.30	0.66	0.87	3.06	3.7	0.003	0.68	0.0	0.04	15.96	0.00	2.197	6.96	2.81	2.7	97.3	0.0	2.22	0.61	0.67	0.86	2.56	19128	2352	12	0	0	0	0	logfile
✔	7F93	31496	2024-02-18	2021-07-03	3.6	3.95	—	4.0	0.007	1.26	0.0	0.05	16.99	0.01	2.293	3.35	4.00	2.8	97.2	0.0	-5.48	0.56	0.84	2.93	4.1	0.002	0.59	0.0	0.04	15.62	0.00	2.184	8.38	2.14	2.3	97.7	0.0	1.02	0.78	0.56	0.83	2.96	20808	2352	24	0	120	0	0	logfile
✔	7RAM	24369	2024-02-15	2021-07-02	3.43	4.07	3.55	4.0	0.002	0.57	0.0	0.04	14.51	0.00	2.154	7.54	0.00	4.4	95.6	0.0	-0.56	0.72	0.76	2.24	4.0	0.003	0.62	0.0	0.04	16.18	0.00	2.187	8.80	1.70	5.1	94.9	0.0	-0.37	0.34	0.72	0.78	1.55	12006	1497	4	0	0	0	0	logfile
✔	7P1T	13164	2024-02-16	2021-07-02	2.29	2.06	2.40	1.7	0.007	1.08	0.0	0.06	14.06	0.01	2.458	1.50	0.92	1.5	98.5	0.0	0.14	0.85	0.85	5.23	1.7	0.002	0.54	0.0	0.04	15.90	0.00	2.145	5.30	2.00	1.7	98.3	0.0	2.03	4.36	0.87	0.87	4.98	122040	15900	60	0	0	0	0	logfile
✔	7F8J	31489	2024-02-17	2021-07-02	3.6	3.73	3.52	3.7	0.010	1.62	0.0	0.04	20.22	0.00	2.215	7.08	1.04	5.8	94.2	0.0	0.64	0.63	0.84	2.72	3.7	0.003	1.41	0.0	0.04	16.25	0.00	2.273	8.00	1.98	5.3	94.7	0.0	1.29	1.21	0.61	0.84	2.69	18984	2240	14	0	42	0	0	logfile

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