Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7F8J	31489	2024-02-17	2021-07-02	3.6	3.73	3.52	3.7	0.010	1.62	0.0	0.04	20.22	0.00	2.215	7.08	1.04	5.8	94.2	0.0	0.64	0.63	0.84	2.72	3.7	0.003	1.41	0.0	0.04	16.25	0.00	2.273	8.00	1.98	5.3	94.7	0.0	1.29	1.21	0.61	0.84	2.69	18984	2240	14	0	42	0	0	logfile
✔	7F8N	31490	2024-02-17	2021-07-02	3.4	3.52	3.33	3.5	0.012	1.08	0.0	0.04	18.97	0.01	2.219	10.34	2.55	4.7	95.3	0.0	-0.91	0.62	0.81	2.45	3.5	0.003	0.55	0.0	0.04	16.20	0.00	2.166	11.60	2.29	3.7	96.3	0.0	0.28	0.46	0.59	0.84	1.89	18522	2163	14	0	49	0	0	logfile
✔	7RAS	24385	2024-02-17	2021-07-02	3.64	4.18	—	4.1	0.010	1.33	0.0	0.05	11.93	0.01	2.283	4.29	1.11	6.3	93.2	0.5	-6.09	0.67	0.82	2.35	4.1	0.002	0.70	0.0	0.04	15.15	0.00	2.187	10.54	1.30	4.4	95.5	0.1	-0.44	0.80	0.68	0.82	1.53	20000	2440	8	0	8	0	0	logfile
✔	7P1T	13164	2024-02-16	2021-07-02	2.29	2.06	2.40	1.7	0.007	1.08	0.0	0.06	14.06	0.01	2.458	1.50	0.92	1.5	98.5	0.0	0.14	0.85	0.85	5.23	1.7	0.002	0.54	0.0	0.04	15.90	0.00	2.145	5.30	2.00	1.7	98.3	0.0	2.03	4.36	0.87	0.87	4.98	122040	15900	60	0	0	0	0	logfile
✔	7RAU	24386	2024-02-17	2021-07-02	3.99	4.71	—	4.5	0.009	1.26	0.0	0.05	12.74	0.01	2.299	4.39	1.11	6.3	93.5	0.2	-4.28	0.63	0.79	0.68	4.6	0.003	0.84	0.0	0.04	15.45	0.00	2.148	14.55	2.69	5.9	94.1	0.0	0.15	1.79	0.64	0.80	0.45	20000	2440	8	0	8	0	0	logfile
✔	7RAM	24369	2024-02-15	2021-07-02	3.43	4.07	3.55	4.0	0.002	0.57	0.0	0.04	14.51	0.00	2.154	7.54	0.00	4.4	95.6	0.0	-0.56	0.72	0.76	2.24	4.0	0.003	0.62	0.0	0.04	16.18	0.00	2.187	8.80	1.70	5.1	94.9	0.0	-0.37	0.34	0.72	0.78	1.55	12006	1497	4	0	0	0	0	logfile
✔	7F8o	31491	2024-02-17	2021-07-02	3.6	3.69	3.45	3.7	0.008	0.88	0.0	0.04	15.89	0.00	2.106	8.68	0.71	4.6	95.4	0.0	0.47	0.61	0.82	3.06	3.6	0.003	0.64	0.0	0.04	16.36	0.00	2.088	11.61	2.29	4.6	95.4	0.0	0.47	0.46	0.61	0.82	2.44	18032	2184	14	0	21	0	0	logfile
✔	7RAN	24378	2024-02-14	2021-07-02	3.45	3.40	—	3.5	0.003	0.62	0.0	0.05	12.45	0.00	2.091	5.14	0.00	3.0	97.0	0.0	0.61	0.75	0.81	2.69	3.5	0.003	0.53	0.0	0.04	14.68	0.00	2.111	4.90	1.68	2.8	97.2	0.0	1.05	0.92	0.76	0.83	2.17	8523	1120	6	0	1	0	0	logfile
✔	7RAi	24362	2024-02-18	2021-07-01	3.24	3.65	—	3.5	0.008	0.88	0.0	0.06	19.83	0.00	2.199	10.07	7.69	8.7	91.3	0.0	-4.72	0.79	0.83	2.74	3.5	0.004	0.71	0.0	0.05	14.70	0.00	2.241	9.70	4.30	5.4	94.6	0.0	-2.09	1.56	0.83	0.87	2.44	20652	2424	54	0	132	0	0	logfile
✔	7P1K	13163	2024-02-13	2021-07-01	3.64	3.10	3.45	3.2	0.014	1.12	0.0	0.05	16.20	0.02	2.023	12.65	4.61	4.2	95.8	0.0	-0.19	0.54	0.70	1.60	3.2	0.002	0.61	0.0	0.04	14.97	0.00	2.195	7.13	2.45	4.3	95.7	0.0	1.89	1.25	0.56	0.70	1.64	6892	866	4	0	12	0	0	logfile
✔	7P13	13154	2024-02-15	2021-07-01	2.29	1.96	2.28	1.7	0.016	1.06	0.0	0.07	14.07	0.01	2.430	5.24	0.00	3.3	96.7	0.0	2.06	0.82	0.87	4.22	1.6	0.002	0.46	0.0	0.03	17.13	0.00	2.108	15.11	1.52	2.4	97.6	0.0	5.18	0.51	0.83	0.87	3.53	13727	1743	7	0	0	0	154	logfile
✔	7P16	13157	2024-02-13	2021-07-01	4.3	4.40	3.53	4.3	0.004	0.73	0.0	0.04	16.47	0.00	2.178	7.56	0.00	2.5	97.5	0.0	-0.08	0.65	0.77	—	4.3	0.003	0.65	0.0	0.04	14.76	0.00	2.182	10.31	0.00	3.9	96.1	0.0	1.00	1.45	0.64	0.77	—	3621	444	3	0	1	0	0	logfile
✔	7P1G	13158	2024-02-20	2021-07-01	3.2	3.39	—	3.3	0.022	1.36	10.0	0.08	15.09	0.01	1.310	9.08	0.17	6.0	94.0	0.0	-2.89	0.65	0.80	3.22	3.3	0.003	0.69	0.0	0.04	16.22	0.00	1.976	10.71	1.61	2.9	97.1	0.0	-0.01	1.76	0.65	0.83	2.23	28580	3620	25	5	25	0	0	logfile
✔	7P1i	13161	2024-02-13	2021-07-01	3.15	4.49	3.18	4.4	0.002	0.57	0.0	0.04	11.18	0.00	2.265	8.39	5.90	4.3	95.7	0.0	3.38	0.55	0.71	0.60	4.4	0.004	1.08	0.0	0.05	14.97	0.00	2.149	19.98	3.23	5.9	94.1	0.0	0.45	0.94	0.56	0.73	0.43	6644	884	2	0	0	0	0	logfile
✔	7P1H	13159	2024-02-16	2021-07-01	3.9	4.12	—	3.9	0.005	1.01	0.0	0.05	14.38	0.01	2.016	12.38	0.00	5.7	94.3	0.0	-1.60	0.81	0.60	0.33	3.9	0.003	0.62	0.0	0.04	16.04	0.00	1.878	11.88	2.22	6.0	94.0	0.0	-0.40	1.66	0.86	0.74	1.32	13957	898	4	0	2	0	6917	logfile
✔	7P15	13156	2024-02-14	2021-07-01	3.58	3.46	3.56	3.5	0.007	0.93	2.0	0.07	16.44	0.02	2.182	8.93	0.23	4.0	96.0	0.0	-1.15	0.62	0.71	2.09	3.5	0.003	0.72	0.0	0.04	18.10	0.01	2.182	10.95	1.87	2.9	97.1	0.0	-0.27	0.42	0.62	0.71	2.29	8587	969	3	34	1	0	0	logfile
✔	7P0Z	13153	2024-02-15	2021-07-01	2.43	2.02	2.41	2.2	0.016	0.94	0.0	0.06	14.02	0.01	2.141	7.29	0.00	4.3	95.7	0.0	1.90	0.83	0.86	2.91	2.3	0.003	0.51	0.0	0.03	18.19	0.00	2.272	4.45	2.23	0.6	99.4	0.0	5.11	0.53	0.84	0.87	2.21	12873	1652	7	0	0	0	0	logfile
✔	7P14	13155	2024-02-13	2021-07-01	3.66	3.82	3.50	3.8	0.004	0.64	0.0	0.04	18.55	0.00	2.295	7.45	0.00	2.7	97.3	0.0	1.11	0.60	0.78	2.82	3.8	0.004	0.57	0.0	0.04	17.68	0.00	2.264	10.71	3.02	4.5	95.5	0.0	2.79	0.44	0.61	0.79	1.80	3796	454	3	0	3	0	0	logfile
✔	7RAK	24363	2024-02-14	2021-07-01	3.9	4.13	—	4.1	0.003	0.61	0.0	0.04	7.02	0.00	2.283	4.06	0.00	14.0	85.0	1.0	-3.87	0.62	0.61	0.78	4.1	0.002	0.62	0.0	0.04	12.06	0.00	2.190	7.48	0.75	4.8	95.0	0.2	-1.43	1.30	0.67	0.70	0.55	61296	8112	32	0	16	0	0	logfile
✔	7P1J	13162	2024-02-13	2021-07-01	3.04	4.02	2.96	4.0	0.002	0.48	0.0	0.03	8.89	0.00	2.305	5.96	2.29	3.5	96.5	0.0	2.14	0.65	0.71	0.64	4.0	0.003	0.83	0.0	0.04	14.67	0.00	2.222	16.54	4.15	6.2	93.8	0.0	0.93	1.40	0.66	0.72	0.68	6502	868	2	0	0	0	0	logfile

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