Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7oQC	13029	2024-02-22	2021-06-03	4.1	4.04	4.09	4.0	0.004	0.80	0.0	0.05	19.44	0.05	2.245	4.41	0.58	4.5	95.4	0.1	-3.86	0.57	0.63	—	4.0	0.003	1.09	0.0	0.04	20.25	0.01	2.076	15.29	0.10	6.0	93.9	0.1	0.10	1.52	0.61	0.70	—	35050	3078	18	568	53	0	0	logfile
✔	7F04	31396	2024-02-14	2021-06-03	2.86	3.11	—	3.0	0.005	0.80	0.0	0.04	13.87	0.01	1.706	9.75	0.00	6.4	93.4	0.2	-0.04	0.65	0.83	3.68	3.0	0.003	0.65	0.0	0.04	16.38	0.01	1.989	9.92	2.40	5.7	94.2	0.1	0.64	1.24	0.67	0.86	2.78	8934	1130	12	0	6	4	0	logfile
✔	7F02	31394	2024-02-14	2021-06-03	3.24	3.61	—	3.5	0.004	0.69	0.0	0.04	14.42	0.00	1.895	8.78	0.00	8.7	91.1	0.2	-1.36	0.69	0.81	2.02	3.5	0.004	0.68	0.0	0.04	16.30	0.00	1.914	9.00	2.73	8.4	91.6	0.0	-0.55	0.91	0.65	0.83	2.10	8835	1130	9	0	5	0	0	logfile
✔	7EZV	31391	2024-02-13	2021-06-02	3.3	3.71	—	3.5	0.005	0.71	0.0	0.05	13.54	0.01	2.034	14.66	0.75	8.4	91.3	0.3	-0.96	0.74	0.85	3.03	3.5	0.004	0.66	0.0	0.04	15.58	0.00	2.073	14.04	2.99	7.4	92.4	0.2	-0.76	0.43	0.74	0.86	2.99	4937	632	5	0	0	0	0	logfile
✔	7EZH	31387	2024-02-14	2021-06-01	3.2	2.28	—	2.1	0.004	0.68	1.0	0.05	12.75	0.01	2.278	2.69	0.74	4.7	95.2	0.1	-1.38	0.73	0.72	2.97	2.1	0.003	0.65	0.0	0.04	15.23	0.00	2.040	12.12	3.50	2.2	97.8	0.0	1.03	1.59	0.75	0.77	2.49	8838	1150	6	0	0	0	0	logfile
✔	7EZ2	31386	2024-02-14	2021-06-01	3.05	2.80	—	3.0	0.005	0.56	0.0	0.03	23.37	0.00	1.809	0.92	0.00	0.0	0.0	0.0	—	0.69	0.81	—	3.0	0.008	0.87	0.0	0.05	23.77	0.01	1.758	7.51	0.00	0.0	0.0	0.0	—	1.04	0.73	0.89	—	8698	0	3	406	31	0	0	logfile
✔	7N3o	24142	2024-02-14	2021-06-01	3.8	4.01	—	3.9	0.003	0.59	0.0	0.04	23.64	0.00	2.285	8.30	1.35	3.6	96.4	0.0	1.09	0.71	0.66	1.57	3.9	0.003	0.66	0.0	0.03	23.96	0.00	2.162	17.01	2.70	3.6	96.4	0.0	0.96	0.84	0.75	0.74	1.92	8295	454	2	222	0	0	0	logfile
✔	7oPL	13020	2024-02-17	2021-06-01	4.12	5.46	3.80	3.9	0.004	0.77	1.0	0.05	14.34	0.01	2.116	18.14	0.05	4.5	95.5	0.1	-0.84	0.90	0.77	—	4.0	0.003	0.66	0.0	0.04	14.39	0.00	2.107	19.25	0.05	5.4	94.5	0.1	-0.50	0.61	0.92	0.84	—	19743	2442	8	0	4	0	0	logfile
✔	7EZ0	31385	2024-02-14	2021-06-01	3.14	3.26	—	3.2	0.003	0.56	0.0	0.03	23.64	0.00	1.804	2.25	0.00	0.0	0.0	0.0	—	0.74	0.79	—	3.2	0.006	0.70	0.0	0.04	23.85	0.00	1.860	8.26	0.00	0.0	0.0	0.0	—	1.55	0.77	0.86	—	8306	0	1	387	27	0	0	logfile
✔	7N3N	24141	2024-02-15	2021-06-01	3.33	3.58	3.42	3.5	0.005	0.83	1.0	0.05	13.63	0.01	1.756	10.48	0.22	5.3	94.7	0.0	-0.92	0.63	0.73	2.04	3.5	0.004	0.66	0.0	0.04	15.38	0.00	2.083	12.99	1.86	5.1	94.9	0.0	-0.25	0.42	0.64	0.79	2.09	13026	1663	4	0	2	0	0	logfile
✔	7N3P	24143	2024-02-14	2021-06-01	3.65	3.97	—	3.9	0.003	0.58	0.0	0.04	24.55	0.00	2.224	8.05	0.00	2.2	97.8	0.0	1.68	0.77	0.79	2.64	3.9	0.004	0.61	0.0	0.04	24.82	0.00	2.130	15.26	2.43	2.5	97.5	0.0	1.16	1.15	0.79	0.82	2.76	9055	454	4	259	0	0	0	logfile
✔	7EZK	31388	2024-02-13	2021-06-01	3.1	2.25	—	2.1	0.011	1.04	0.0	0.06	13.27	0.01	2.206	4.27	0.26	3.4	96.6	0.0	-1.02	0.72	0.73	3.21	2.1	0.003	0.62	0.0	0.04	15.88	0.00	2.221	9.17	2.73	1.7	98.3	0.0	1.00	1.60	0.73	0.77	2.96	7196	922	5	0	0	0	0	logfile
✔	7EZM	31389	2024-02-14	2021-06-01	2.9	2.20	—	2.0	0.011	1.07	1.0	0.07	13.16	0.01	2.228	4.78	0.94	3.8	96.2	0.0	-0.87	0.76	0.76	3.60	2.0	0.003	0.65	0.0	0.04	16.07	0.00	2.105	11.69	3.13	1.8	98.2	0.0	0.52	0.62	0.78	0.80	2.95	9008	1171	6	0	0	0	0	logfile
✔	7oP8	13014	2024-02-14	2021-05-31	3.5	3.85	—	3.8	0.004	0.86	0.0	0.05	14.44	0.01	1.950	6.41	0.00	5.6	94.4	0.0	-1.73	0.66	0.77	1.18	3.8	0.003	0.66	0.0	0.04	16.22	0.00	1.376	11.52	3.08	6.7	93.3	0.0	-0.93	0.95	0.66	0.79	0.91	8872	1118	1	0	2	0	0	logfile
✔	7oPC	13015	2024-02-15	2021-05-31	3.0	2.99	—	2.9	0.017	1.03	1.0	0.08	14.54	0.01	1.898	5.28	0.05	5.8	94.1	0.1	-2.03	0.70	0.77	3.60	2.9	0.004	0.68	0.0	0.04	16.97	0.00	1.922	10.24	2.06	3.9	96.1	0.0	0.25	0.61	0.72	0.82	3.25	64223	9104	34	103	49	0	0	logfile
✔	7oPD	13016	2024-02-15	2021-05-31	3.0	3.01	2.90	2.9	0.019	1.06	2.0	0.08	14.54	0.01	1.819	5.31	0.04	5.9	94.1	0.1	-2.05	0.70	0.77	3.74	3.0	0.003	0.66	0.0	0.04	17.05	0.00	1.976	10.17	2.24	3.9	96.1	0.0	0.40	0.61	0.72	0.82	3.24	64227	9104	34	103	49	0	0	logfile
✔	7oPE	13017	2024-02-21	2021-05-31	3.2	5.30	3.21	5.0	0.011	1.04	2.0	0.06	23.47	0.01	1.028	4.81	0.23	8.2	91.6	0.2	-3.62	0.89	0.72	-0.03	5.0	0.005	0.76	0.0	0.04	24.13	0.01	2.006	32.27	5.12	7.8	92.0	0.1	-1.53	1.13	0.93	0.88	0.28	93862	3818	33	2996	0	0	0	logfile
✔	7N33	24137	2024-02-16	2021-05-31	2.5	2.72	—	2.6	0.011	0.64	0.0	0.05	13.95	0.00	2.294	4.10	2.93	2.6	97.4	0.0	0.50	0.82	0.87	5.52	2.6	0.003	0.57	0.0	0.05	16.82	0.00	2.262	5.71	3.31	2.2	97.8	0.0	0.68	0.56	0.83	0.89	4.45	16524	2076	12	12	0	0	0	logfile
✔	7EY6	31321	2024-02-24	2021-05-30	4.3	4.22	—	4.2	0.009	1.56	60.0	0.11	18.03	0.01	2.089	20.79	16.41	6.0	93.8	0.2	-0.70	0.53	0.72	—	4.2	0.003	0.70	0.0	0.04	14.19	0.00	2.138	12.21	0.02	5.3	94.7	0.0	-0.30	1.07	0.52	0.72	—	44028	5628	12	0	0	0	0	logfile
✔	7EY0	31374	2024-02-13	2021-05-29	3.2	3.42	—	3.4	0.007	1.01	5.0	0.06	14.51	0.01	2.105	18.00	3.08	12.2	87.3	0.4	-2.42	0.55	0.73	3.30	3.4	0.003	0.65	0.0	0.04	15.94	0.00	2.161	12.52	4.00	6.7	93.3	0.0	-1.26	2.50	0.58	0.80	2.78	5963	755	6	0	0	0	0	logfile

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