Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7EY5	31378	2024-02-13	2021-05-29	3.4	3.68	—	3.5	0.005	0.81	0.0	0.05	13.84	0.01	2.161	11.76	0.00	12.9	87.1	0.0	-3.63	0.68	0.82	2.63	3.5	0.003	0.77	0.0	0.04	15.18	0.00	2.175	10.66	3.27	10.0	90.0	0.0	-2.46	0.44	0.68	0.83	1.98	5072	648	5	0	0	0	0	logfile
✔	7EY4	31377	2024-02-13	2021-05-29	3.69	3.90	—	3.9	0.007	0.90	0.0	0.05	16.81	0.01	2.150	10.63	0.20	13.5	86.1	0.4	-2.54	0.63	0.78	3.57	3.9	0.004	0.76	0.0	0.05	15.78	0.01	2.194	9.54	5.00	10.3	89.7	0.0	-1.66	0.68	0.65	0.81	2.97	4683	585	5	0	3	0	0	logfile
✔	7N1T	24122	2024-02-20	2021-05-28	3.11	2.80	—	2.2	0.014	1.80	13.0	0.11	16.47	0.01	1.917	6.01	0.96	6.0	93.3	0.7	-1.65	0.83	0.82	3.61	2.2	0.003	0.74	0.0	0.04	14.05	0.00	2.102	9.44	2.27	5.3	94.5	0.1	-0.14	1.00	0.84	0.85	2.71	27717	3345	39	0	114	0	0	logfile
✔	7oP1	13011	2024-02-14	2021-05-28	3.7	3.77	—	3.6	0.004	1.16	0.0	0.04	13.67	0.00	1.848	7.11	0.00	4.7	95.3	0.0	-0.69	0.69	0.87	2.43	3.6	0.002	0.52	0.0	0.04	14.91	0.00	1.725	4.95	0.83	3.3	96.7	0.0	0.60	0.28	0.70	0.85	1.44	8744	1098	1	0	3	0	0	logfile
✔	7N1Q	24121	2024-02-20	2021-05-28	2.9	2.77	—	2.2	0.014	1.79	10.0	0.11	14.37	0.01	1.939	4.21	1.29	6.1	93.2	0.6	-1.52	0.83	0.82	3.54	2.2	0.004	0.77	0.0	0.05	14.96	0.00	2.090	8.36	2.93	5.4	94.5	0.1	-0.23	0.64	0.84	0.85	2.99	27012	3281	34	0	94	0	0	logfile
✔	7N1Y	24127	2024-02-20	2021-05-28	4.3	2.48	—	2.0	0.016	2.11	23.0	0.15	16.16	0.01	1.099	10.84	1.91	8.5	90.8	0.6	-2.82	0.78	0.64	—	2.0	0.004	0.79	0.0	0.05	13.82	0.00	2.072	15.44	0.00	6.8	93.2	0.0	-1.43	0.69	0.78	0.64	—	26636	3242	31	0	91	0	0	logfile
✔	7oP3	13012	2024-02-14	2021-05-28	3.5	3.77	—	3.7	0.004	0.78	0.0	0.05	14.58	0.01	2.278	5.95	0.00	4.8	95.2	0.0	-1.24	0.63	0.81	0.96	3.7	0.004	0.59	0.0	0.04	16.22	0.00	2.162	9.80	1.76	5.5	94.5	0.0	-0.76	0.36	0.62	0.82	0.77	8772	1100	1	0	1	0	0	logfile
✔	7N28	24128	2024-02-21	2021-05-28	4.2	4.38	4.07	4.2	0.005	0.74	1.0	0.06	17.21	0.00	2.103	12.05	0.16	7.9	92.1	0.0	-1.88	0.85	0.79	—	4.2	0.003	0.66	0.0	0.05	13.93	0.00	2.092	12.57	0.06	7.6	92.4	0.0	-1.56	0.38	0.85	0.79	—	29461	3523	58	0	140	0	0	logfile
✔	7N1W	24125	2024-02-20	2021-05-28	3.33	2.63	—	2.0	0.014	1.79	17.0	0.12	14.71	0.01	1.951	6.11	0.81	6.0	93.5	0.5	-1.65	0.82	0.79	3.10	2.0	0.004	0.74	0.0	0.05	14.83	0.00	2.037	11.30	2.70	4.7	95.3	0.0	-0.14	1.56	0.84	0.82	2.31	26810	3257	35	0	95	0	0	logfile
✔	7ooP	13010	2024-02-14	2021-05-28	2.9	2.93	2.83	2.8	0.007	0.92	0.0	0.09	14.64	0.01	1.721	4.94	0.00	4.7	95.2	0.1	-1.58	0.80	0.78	2.94	2.9	0.005	0.81	2.0	0.05	16.66	0.00	1.888	12.36	1.80	4.3	95.7	0.0	0.23	4.42	0.82	0.84	2.87	62441	8386	32	103	49	0	0	logfile
✔	7N1V	24124	2024-02-20	2021-05-28	3.21	2.67	—	2.0	0.014	1.77	10.0	0.13	14.54	0.01	1.776	4.31	0.98	6.5	93.2	0.3	-1.63	0.82	0.80	3.43	2.2	0.003	0.71	0.0	0.05	14.91	0.00	2.122	8.81	3.25	4.0	96.0	0.0	0.00	1.32	0.84	0.82	2.73	26947	3274	35	0	95	0	0	logfile
✔	7N1X	24126	2024-02-20	2021-05-28	4.0	2.34	—	1.8	0.014	1.89	13.0	0.14	15.45	0.01	1.484	9.90	1.97	8.1	91.3	0.6	-2.39	0.80	0.69	—	1.8	0.005	0.88	1.0	0.05	15.85	0.00	1.529	17.24	4.14	5.3	94.7	0.0	-1.12	1.08	0.80	0.69	—	26810	3257	35	0	95	0	0	logfile
✔	7N1U	24123	2024-02-20	2021-05-28	3.14	2.62	—	1.9	0.013	1.77	7.0	0.13	14.94	0.01	2.003	6.59	1.56	6.1	93.7	0.3	-1.65	0.83	0.80	3.13	1.9	0.003	0.74	0.0	0.05	14.96	0.00	2.151	10.54	2.98	3.7	96.3	0.0	0.04	0.65	0.84	0.82	2.35	26619	3225	39	0	99	0	0	logfile
✔	7N17	24115	2024-02-17	2021-05-27	3.1	3.51	—	3.4	0.009	1.32	4.0	0.06	18.63	0.01	2.355	3.44	1.28	2.9	97.1	0.0	-4.58	0.67	0.86	3.03	3.4	0.002	0.53	0.0	0.04	15.63	0.00	2.227	7.94	1.07	1.7	98.3	0.0	1.44	0.51	0.67	0.88	2.99	17596	2068	8	0	24	0	0	logfile
✔	7ooB	13009	2024-02-21	2021-05-27	2.7	2.65	2.56	2.6	0.005	0.75	0.0	0.05	15.48	0.00	1.918	4.21	0.00	4.0	96.0	0.0	-1.31	0.78	0.81	3.80	2.6	0.003	0.57	0.0	0.04	17.47	0.00	1.814	7.85	1.04	3.8	96.2	0.0	-0.08	1.24	0.78	0.84	3.57	90745	5550	25	92	12	0	44484	logfile
✔	7EXD	31371	2024-02-14	2021-05-27	3.4	2.47	—	2.2	0.003	0.52	0.0	0.04	12.79	0.00	2.114	6.44	0.53	2.1	97.9	0.0	1.95	0.73	0.73	1.79	2.2	0.002	0.60	0.0	0.04	15.94	0.00	2.146	11.78	2.96	2.5	97.5	0.0	0.78	1.19	0.76	0.77	1.95	8749	1118	5	0	1	0	0	logfile
✔	7ooA	13008	2024-02-16	2021-05-27	2.7	2.63	2.63	2.6	0.005	0.66	0.0	0.05	21.92	0.00	2.256	5.81	0.00	0.4	99.6	0.0	2.71	0.71	0.86	4.30	2.6	0.003	0.46	0.0	0.04	15.74	0.00	2.229	5.71	1.48	1.2	98.8	0.0	1.75	1.12	0.71	0.88	4.00	15610	1834	14	0	35	0	0	logfile
✔	7N16	24114	2024-02-17	2021-05-27	3.2	3.17	—	3.5	0.008	1.18	0.0	0.06	18.87	0.01	2.235	4.59	0.86	5.7	94.3	0.0	-4.54	0.63	0.84	2.47	3.6	0.002	0.55	0.0	0.04	17.33	0.00	2.257	10.19	2.25	4.6	95.4	0.0	0.62	1.29	0.60	0.84	1.53	17357	2056	8	0	17	0	0	logfile
✔	7oo6	13006	2024-02-16	2021-05-26	3.1	2.92	2.88	3.0	0.004	0.57	0.0	0.04	12.22	0.00	2.327	9.05	0.00	1.5	98.5	0.0	2.48	0.63	0.80	2.67	3.0	0.002	0.45	0.0	0.04	13.86	0.00	2.363	7.55	2.03	1.1	98.9	0.0	2.20	1.14	0.64	0.82	2.28	14546	1827	14	0	14	0	0	logfile
✔	7oo3	13004	2024-02-22	2021-05-26	2.8	2.93	2.82	2.9	0.010	0.90	0.0	0.06	15.29	0.01	1.919	4.52	0.00	3.8	96.2	0.0	-1.32	0.78	0.81	4.02	2.9	0.005	0.58	0.0	0.04	16.91	0.00	1.878	8.35	1.02	4.0	96.0	0.0	0.02	1.56	0.74	0.80	3.76	95846	6020	26	92	44	0	46456	logfile

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