Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7oo8	13007	2024-02-16	2021-05-26	3.7	2.99	3.39	3.0	0.003	0.40	0.0	0.04	9.89	0.00	2.286	6.45	0.00	1.9	98.1	0.0	2.79	0.65	0.79	2.44	3.0	0.003	0.49	0.0	0.04	14.67	0.00	2.274	10.31	2.30	1.4	98.6	0.0	2.50	0.42	0.65	0.79	2.17	13923	1827	7	0	0	0	0	logfile
✔	7oo3	13004	2024-02-22	2021-05-26	2.8	2.93	2.82	2.9	0.010	0.90	0.0	0.06	15.29	0.01	1.919	4.52	0.00	3.8	96.2	0.0	-1.32	0.78	0.81	4.02	2.9	0.005	0.58	0.0	0.04	16.91	0.00	1.878	8.35	1.02	4.0	96.0	0.0	0.02	1.56	0.74	0.80	3.76	95846	6020	26	92	44	0	46456	logfile
✔	7oNU	13002	2024-02-16	2021-05-26	3.0	3.11	2.88	3.1	0.005	0.58	0.0	0.04	16.02	0.01	1.890	4.49	0.07	2.4	97.6	0.0	0.53	0.74	0.81	4.05	3.1	0.002	0.50	0.0	0.04	17.37	0.00	2.180	5.84	0.97	1.6	98.4	0.0	1.58	0.41	0.76	0.88	3.12	15083	1763	12	66	6	0	0	logfile
✔	7N0H	24106	2024-02-20	2021-05-25	3.34	3.96	—	3.6	0.005	0.63	0.0	0.05	17.70	0.00	2.156	8.41	0.00	3.8	96.2	0.0	0.29	0.84	0.83	2.11	3.6	0.002	0.55	0.0	0.04	14.25	0.00	2.197	7.43	0.76	3.3	96.7	0.0	0.61	0.37	0.84	0.84	1.78	27974	3469	25	0	64	0	0	logfile
✔	7N0M	24109	2024-02-17	2021-05-25	3.5	3.71	—	3.6	0.009	1.06	0.0	0.05	15.23	0.01	2.290	5.51	0.57	5.4	94.6	0.0	-2.71	0.72	0.82	2.63	3.7	0.005	0.69	0.0	0.04	16.12	0.00	2.192	11.11	2.29	4.4	95.6	0.0	-0.27	0.39	0.71	0.82	1.81	19780	2476	6	0	4	0	0	logfile
✔	7N06	24101	2024-02-17	2021-05-25	2.2	2.34	—	2.2	0.007	0.63	0.0	0.05	14.75	0.00	2.096	3.28	2.10	2.5	97.4	0.1	-1.80	0.83	0.88	7.00	2.2	0.003	0.53	0.0	0.05	16.63	0.00	2.103	3.59	1.73	1.4	98.6	0.0	0.39	1.03	0.84	0.90	6.22	17223	2082	21	18	0	555	0	logfile
✔	7oN1	12993	2024-02-15	2021-05-25	3.35	3.18	—	3.4	0.002	0.47	0.0	0.03	26.14	0.00	2.120	6.38	0.00	1.5	98.5	0.0	-0.25	0.82	0.83	1.11	3.4	0.004	0.57	0.0	0.03	27.16	0.00	2.098	6.97	2.50	2.8	97.2	0.0	2.38	1.33	0.84	0.90	1.47	11150	777	12	246	0	0	0	logfile
✔	7N0G	24105	2024-02-20	2021-05-25	3.02	3.70	—	3.4	0.004	0.60	0.0	0.05	17.87	0.00	2.157	7.77	0.03	3.2	96.8	0.0	0.27	0.85	0.83	2.27	3.3	0.006	0.62	0.0	0.05	14.70	0.00	2.138	8.45	1.10	3.6	96.4	0.0	0.38	1.13	0.85	0.85	2.39	29062	3592	28	0	73	0	0	logfile
✔	7N0N	24110	2024-02-17	2021-05-25	4.15	4.37	—	4.2	0.006	1.01	0.0	0.06	14.98	0.01	2.243	4.69	0.38	3.6	96.4	0.0	-2.21	0.68	0.80	—	4.2	0.002	0.61	0.0	0.04	15.13	0.00	2.233	8.80	0.00	2.5	97.5	0.0	0.76	1.12	0.68	0.80	—	19632	2468	4	0	0	0	0	logfile
✔	7N0L	24108	2024-02-13	2021-05-25	2.8	2.17	—	3.1	0.065	1.95	0.0	0.04	21.58	0.00	1.675	18.13	9.23	2.0	98.0	0.0	-6.10	0.56	0.80	3.16	3.1	0.003	0.65	0.0	0.04	19.54	0.00	2.238	15.04	4.06	0.3	99.7	0.0	1.82	1.21	0.55	0.80	2.05	5270	626	4	0	2	0	0	logfile
✔	7N0C	24103	2024-02-13	2021-05-25	3.4	3.71	—	3.7	0.009	1.00	0.0	0.05	16.67	0.01	2.180	6.79	0.00	1.3	98.7	0.0	-3.80	0.72	0.80	2.48	3.7	0.002	0.58	0.0	0.04	17.09	0.00	1.158	9.83	2.89	4.7	95.3	0.0	-1.28	1.16	0.71	0.80	1.89	6088	644	6	49	7	1	0	logfile
✔	7oNJ	12996	2024-02-17	2021-05-25	2.3	2.52	2.24	2.5	0.009	0.86	0.0	0.05	27.96	0.00	2.155	8.48	0.47	0.8	99.2	0.0	-0.25	0.76	0.88	5.16	2.5	0.003	0.52	0.0	0.04	16.58	0.00	2.220	6.29	0.67	0.8	99.2	0.0	2.26	1.57	0.76	0.89	4.27	16947	1834	21	0	63	266	0	logfile
✔	7N0D	24104	2024-02-18	2021-05-25	2.5	3.26	—	3.2	0.005	0.85	0.0	0.05	14.94	0.01	2.032	4.21	0.00	1.1	98.9	0.0	-2.65	0.72	0.78	4.49	3.2	0.003	0.55	0.0	0.04	16.17	0.00	1.995	6.70	0.99	3.5	96.5	0.0	-0.42	1.17	0.71	0.78	3.98	21846	2572	26	76	28	4	0	logfile
✔	7oNB	12994	2024-02-17	2021-05-25	3.1	3.40	3.04	3.0	0.005	1.01	0.0	0.06	15.09	0.01	2.273	5.59	0.00	3.6	96.4	0.0	-1.28	0.76	0.71	1.66	3.0	0.003	0.63	0.0	0.04	16.43	0.00	2.203	11.23	1.30	3.1	96.9	0.0	-0.13	0.75	0.80	0.82	2.22	20140	2568	14	46	6	0	0	logfile
✔	7oNL	12997	2024-02-16	2021-05-25	3.9	3.35	3.58	3.6	0.002	0.38	0.0	0.04	9.17	0.00	2.180	5.51	0.41	1.5	98.5	0.0	2.97	0.64	0.80	2.02	3.6	0.004	0.84	0.0	0.04	13.75	0.00	2.094	11.26	3.05	1.5	98.5	0.0	2.31	0.55	0.64	0.81	1.43	13923	1827	7	0	0	0	0	logfile
✔	7N0K	24107	2024-02-13	2021-05-25	3.5	4.16	—	4.1	0.003	0.56	0.0	0.03	18.36	0.00	2.238	8.16	7.46	1.0	99.0	0.0	-2.20	0.63	0.77	1.65	4.1	0.003	0.62	0.0	0.03	19.01	0.00	2.285	8.26	4.48	2.0	98.0	0.0	3.48	0.69	0.60	0.75	0.96	5154	626	2	0	0	0	0	logfile
✔	7oNi	12995	2024-02-14	2021-05-25	3.4	3.65	3.17	3.3	0.003	0.53	0.0	0.04	14.04	0.00	1.323	7.13	0.00	4.2	95.8	0.0	0.82	0.87	0.85	2.39	3.3	0.003	0.58	0.0	0.04	15.81	0.00	2.234	7.01	0.89	4.1	95.9	0.0	1.44	0.94	0.88	0.87	1.94	8840	1141	6	0	7	0	0	logfile
✔	7MZ5	24083	2024-02-16	2021-05-24	2.76	2.90	2.75	3.0	0.005	0.72	4.0	0.05	11.21	0.00	2.138	1.25	1.03	4.1	95.5	0.4	1.27	0.56	0.80	2.22	3.0	0.003	0.60	0.0	0.04	15.68	0.00	2.212	9.99	1.29	6.1	93.9	0.0	1.37	0.71	0.55	0.82	1.48	14291	1724	8	0	7	0	0	logfile
✔	7oMM	12990	2024-02-16	2021-05-24	3.4	3.84	—	3.8	0.010	1.47	6.0	0.10	18.84	0.01	1.818	12.01	16.45	9.3	90.2	0.5	-2.70	0.49	0.47	1.89	3.8	0.004	0.72	0.0	0.04	17.23	0.01	2.202	14.98	4.53	10.7	89.3	0.1	-2.02	1.08	0.61	0.68	1.67	13981	1794	4	0	0	0	0	logfile
✔	7EVZ	31342	2024-02-15	2021-05-24	3.07	3.81	—	3.7	0.004	0.58	0.0	0.04	13.33	0.00	2.160	7.10	0.30	3.2	96.8	0.0	-1.99	0.54	0.75	1.86	3.7	0.003	0.55	0.0	0.04	15.54	0.00	2.122	7.76	2.94	4.4	95.6	0.0	0.08	0.93	0.49	0.72	1.86	9078	1144	6	0	5	0	0	logfile

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