Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7oMM	12990	2024-02-16	2021-05-24	3.4	3.84	—	3.8	0.010	1.47	6.0	0.10	18.84	0.01	1.818	12.01	16.45	9.3	90.2	0.5	-2.70	0.49	0.47	1.89	3.8	0.004	0.72	0.0	0.04	17.23	0.01	2.202	14.98	4.53	10.7	89.3	0.1	-2.02	1.08	0.61	0.68	1.67	13981	1794	4	0	0	0	0	logfile
✔	7EW4	31347	2024-02-14	2021-05-24	3.2	3.38	—	3.4	0.003	0.51	0.0	0.04	13.41	0.00	2.237	7.77	0.00	2.0	98.0	0.0	1.05	0.67	0.74	2.41	3.4	0.002	0.54	0.0	0.04	15.09	0.00	2.093	8.79	1.67	2.6	97.4	0.0	0.59	0.40	0.68	0.81	2.34	8929	1145	6	0	3	0	0	logfile
✔	7MZ7	24085	2024-02-17	2021-05-24	3.35	3.57	3.23	3.6	0.013	0.96	0.0	0.06	12.08	0.01	2.046	1.92	0.41	5.7	94.1	0.2	0.21	0.62	0.84	2.91	3.6	0.003	0.63	0.0	0.04	15.20	0.00	2.116	8.33	2.65	5.9	94.1	0.0	1.02	1.80	0.62	0.86	1.93	17889	2180	8	0	5	0	0	logfile
✔	7MZC	24089	2024-02-17	2021-05-24	3.03	3.16	2.96	3.2	0.012	0.90	0.0	0.05	12.07	0.01	2.028	1.92	1.12	5.3	94.6	0.1	0.39	0.61	0.87	3.33	3.2	0.003	0.61	0.0	0.04	15.57	0.00	2.102	8.30	2.36	5.5	94.5	0.0	0.99	1.39	0.63	0.89	2.18	17334	2112	8	0	6	0	0	logfile
✔	7MZD	24090	2024-02-17	2021-05-24	2.9	3.17	2.77	3.2	0.010	0.79	0.0	0.05	10.90	0.01	2.252	1.11	0.59	4.0	96.0	0.0	1.32	0.64	0.88	3.97	3.1	0.002	0.67	0.0	0.04	15.54	0.00	2.138	7.64	1.65	6.1	93.9	0.0	1.65	1.40	0.63	0.90	2.67	17486	2128	12	0	6	4	0	logfile
✔	7EVM	31329	2024-02-14	2021-05-21	2.5	3.26	—	3.1	0.005	0.89	1.0	0.06	15.27	0.00	2.175	11.52	3.36	3.8	96.2	0.0	-2.23	0.59	0.70	2.20	3.1	0.004	0.65	0.0	0.04	16.59	0.00	2.181	11.28	3.25	2.9	97.1	0.0	0.45	1.41	0.62	0.77	2.49	8462	1037	5	0	7	0	0	logfile
✔	7EVP	31339	2024-02-13	2021-05-21	3.2	3.77	—	3.7	0.008	0.87	0.0	0.06	9.80	0.01	2.328	3.80	0.26	6.2	93.8	0.0	-5.27	0.64	0.77	3.74	3.6	0.003	0.59	0.0	0.05	13.83	0.00	2.250	7.22	3.04	4.6	95.4	0.0	-2.02	0.55	0.69	0.81	3.17	6616	840	4	0	0	0	0	logfile
✔	7oM0	12982	2024-02-18	2021-05-21	3.1	3.92	3.06	3.2	0.004	0.63	0.0	0.04	15.34	0.00	2.209	7.54	0.04	2.7	97.3	0.0	1.24	0.90	0.85	2.71	3.2	0.004	0.49	0.0	0.04	14.72	0.00	2.179	10.78	0.45	3.0	97.0	0.0	1.21	0.88	0.90	0.88	2.42	22042	2657	12	0	6	0	0	logfile
✔	7EVN	31330	2024-02-17	2021-05-21	2.6	2.63	—	2.6	0.006	0.86	0.0	0.05	17.47	0.01	2.168	8.61	6.98	4.7	95.2	0.2	-2.09	0.69	0.80	2.93	2.6	0.003	0.62	0.0	0.04	17.76	0.00	2.159	6.02	3.70	3.7	96.3	0.0	0.02	1.21	0.73	0.87	2.70	19668	2649	6	0	3	0	0	logfile
✔	7MYo	24082	2024-02-15	2021-05-21	2.92	3.27	2.93	3.3	0.005	0.89	0.0	0.05	15.19	0.01	2.225	9.92	0.59	5.9	94.1	0.0	-1.97	0.57	0.66	0.99	3.3	0.005	1.00	2.0	0.05	17.68	0.01	2.014	24.44	2.79	6.3	93.6	0.1	-1.06	1.17	0.60	0.70	1.18	10634	1278	2	0	1	0	0	logfile
✔	7EVo	31334	2024-02-21	2021-05-21	2.5	2.59	—	2.6	0.004	0.77	3.0	0.05	18.40	0.01	2.045	8.55	5.50	3.4	96.5	0.1	-3.06	0.55	0.64	2.55	2.6	0.004	0.68	0.0	0.05	18.06	0.00	2.073	7.20	4.62	4.4	95.6	0.0	0.11	1.21	0.64	0.80	2.59	32104	4669	24	148	5	0	0	logfile
✔	7MYN	24081	2024-02-14	2021-05-21	2.79	3.01	2.81	3.2	0.003	0.71	0.0	0.04	14.11	0.00	2.280	7.01	0.26	2.5	97.5	0.0	-0.41	0.65	0.79	2.43	3.1	0.007	1.08	2.0	0.05	17.48	0.01	1.881	18.06	2.24	4.0	96.0	0.0	0.35	1.16	0.65	0.82	2.64	10426	1253	3	0	0	8	0	logfile
✔	7EV9	31325	2024-02-22	2021-05-20	2.6	3.08	2.66	3.0	0.007	0.88	0.0	0.06	13.75	0.01	1.593	3.49	0.00	4.4	95.6	0.0	-3.14	0.64	0.84	3.93	3.0	0.006	0.65	0.0	0.05	15.70	0.01	2.060	6.98	2.61	3.4	96.5	0.1	0.08	0.43	0.63	0.85	3.80	17220	2142	15	0	24	0	0	logfile
✔	7oLE	12979	2024-02-20	2021-05-19	3.41	4.34	3.59	3.9	0.013	1.74	25.0	0.10	15.12	0.01	1.371	42.05	0.38	17.2	81.9	0.8	-5.68	0.55	0.26	-0.19	3.6	0.004	0.89	1.0	0.04	15.98	0.00	2.082	21.90	2.42	10.8	89.0	0.2	-1.97	1.93	0.77	0.76	1.06	26995	2899	14	0	1129	0	0	logfile
✔	7MXE	24072	2024-02-20	2021-05-19	3.7	3.77	1.71	3.7	0.005	0.77	0.0	0.05	14.97	0.00	1.698	4.31	0.35	3.4	96.6	0.0	-3.38	0.73	0.85	2.71	3.7	0.008	0.85	0.0	0.05	14.26	0.00	2.114	6.51	4.10	8.6	91.4	0.0	-1.85	0.64	0.76	0.91	2.72	22149	2632	51	0	128	0	0	logfile
✔	7oLA	12975	2024-02-17	2021-05-19	3.3	3.85	3.21	3.3	0.004	0.59	0.0	0.04	16.47	0.00	2.023	7.61	0.00	2.7	97.3	0.0	1.22	0.88	0.85	2.96	3.4	0.003	0.49	0.0	0.04	16.07	0.00	1.943	8.73	0.78	2.6	97.4	0.0	1.10	0.87	0.88	0.89	2.95	19719	2394	10	0	7	0	0	logfile
✔	7MXo	24074	2024-02-15	2021-05-19	3.47	3.74	3.51	3.7	0.004	0.58	0.0	0.04	13.62	0.00	2.086	6.24	0.00	6.1	93.9	0.0	0.60	0.61	0.77	1.55	3.7	0.003	0.60	0.0	0.04	15.63	0.00	2.175	8.90	2.03	5.0	95.0	0.0	0.79	0.42	0.63	0.80	1.13	12832	1644	4	0	4	0	0	logfile
✔	7MXD	24071	2024-02-21	2021-05-19	3.4	3.54	3.38	3.5	0.005	0.72	1.0	0.06	16.46	0.00	2.107	7.65	0.00	5.9	94.1	0.0	-1.62	0.80	0.80	2.29	3.5	0.003	0.58	0.0	0.05	14.86	0.00	2.134	7.96	1.61	5.6	94.4	0.0	-0.82	0.32	0.82	0.85	2.11	29496	3519	58	0	146	0	0	logfile
✔	7MXY	24076	2024-02-18	2021-05-19	2.18	2.49	—	2.5	0.006	0.66	0.0	0.04	18.00	0.00	2.195	11.50	3.20	3.3	96.7	0.0	1.25	0.50	0.66	2.36	2.4	0.006	0.62	0.0	0.04	18.09	0.00	1.966	14.10	5.62	4.1	95.9	0.0	0.71	1.12	0.53	0.69	2.57	22265	1406	12	0	5	2	11129	logfile
✔	7MXP	24075	2024-02-21	2021-05-19	4.46	8.21	—	4.5	0.010	1.47	7.0	0.08	16.72	0.01	2.280	7.97	0.23	8.5	91.3	0.2	-3.74	0.89	0.80	—	4.5	0.003	0.70	0.0	0.05	13.41	0.00	2.111	20.69	0.00	8.7	91.3	0.0	-2.06	1.18	0.89	0.82	—	31664	3967	19	0	61	0	0	logfile

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