Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7oKo	12963	2024-02-13	2021-05-18	3.4	3.63	—	3.6	0.006	0.84	11.0	0.05	13.64	0.01	2.010	13.03	0.92	14.4	85.5	0.2	-3.66	0.78	0.80	1.97	3.6	0.004	0.81	2.0	0.04	15.38	0.01	1.933	12.63	3.48	9.6	90.3	0.0	-2.70	0.57	0.78	0.81	1.44	54483	7124	65	0	0	0	0	logfile
✔	7oKX	12969	2024-02-22	2021-05-18	3.3	3.10	—	3.0	0.005	0.75	0.0	0.05	16.56	0.01	2.093	5.70	0.03	2.7	97.3	0.0	-1.33	0.72	0.82	3.50	3.0	0.002	0.52	0.0	0.04	17.47	0.00	2.027	8.95	1.44	2.2	97.8	0.0	0.52	1.10	0.73	0.84	3.00	34834	4157	24	79	9	0	0	logfile
✔	7oKY	12973	2024-02-23	2021-05-18	4.14	3.86	—	3.5	0.004	0.76	0.0	0.05	16.23	0.01	2.093	5.96	0.02	2.7	97.3	0.0	-1.32	0.76	0.73	—	3.5	0.005	0.63	0.0	0.04	15.65	0.00	1.982	11.81	0.05	3.4	96.6	0.0	0.26	1.68	0.83	0.84	—	38341	4596	26	79	10	0	0	logfile
✔	7oKN	12962	2024-02-20	2021-05-18	3.34	3.57	—	3.5	0.006	0.92	0.0	0.04	17.96	0.00	1.898	13.52	1.03	9.3	90.7	0.0	-2.82	0.61	0.66	1.09	3.5	0.003	0.65	0.0	0.04	18.35	0.00	2.180	9.51	6.81	5.8	94.2	0.0	-1.21	2.56	0.73	0.84	2.43	28067	3757	34	0	0	0	0	logfile
✔	7EUo	31323	2024-02-14	2021-05-18	2.9	3.61	2.97	3.5	0.004	0.65	0.0	0.05	13.72	0.00	2.198	6.82	0.00	4.3	95.7	0.0	-0.21	0.63	0.82	3.21	3.5	0.003	0.56	0.0	0.04	15.97	0.00	2.132	7.60	2.79	3.1	96.9	0.0	0.45	0.37	0.60	0.79	2.65	8950	1138	7	0	2	0	0	logfile
✔	7oL0	12974	2024-02-22	2021-05-18	3.0	2.88	2.88	2.9	0.010	0.88	0.0	0.06	15.93	0.01	2.073	6.01	0.06	3.0	97.0	0.0	-1.45	0.73	0.84	3.95	2.9	0.003	0.56	0.0	0.04	17.91	0.00	2.005	9.68	1.27	2.5	97.5	0.0	0.46	0.39	0.73	0.87	3.25	32892	3912	22	79	9	0	0	logfile
✔	7oK0	12960	2024-02-19	2021-05-17	2.9	3.35	2.78	3.2	0.021	0.93	0.0	0.22	12.91	0.00	2.038	5.46	0.00	3.7	96.3	0.0	0.12	0.78	0.85	3.19	3.2	0.003	0.75	0.0	0.05	15.32	0.00	1.777	5.93	1.39	4.1	95.9	0.0	0.14	0.30	0.78	0.86	2.98	25636	3234	18	0	8	0	0	logfile
✔	7oJi	12952	2024-02-14	2021-05-16	3.4	3.75	3.40	3.6	0.012	1.08	0.0	0.08	12.85	0.00	2.231	4.30	0.41	4.8	95.0	0.2	-0.15	0.69	0.83	3.28	3.6	0.003	0.56	0.0	0.04	15.03	0.00	2.206	5.69	2.25	3.9	96.1	0.0	0.36	0.68	0.72	0.88	2.81	9195	1144	4	0	9	0	0	logfile
✔	7oJK	12954	2024-02-16	2021-05-16	3.89	4.14	3.97	3.8	0.002	0.61	0.0	0.04	15.07	0.00	2.174	10.15	0.06	15.2	84.5	0.2	-4.19	0.88	0.81	1.38	3.8	0.003	0.66	0.0	0.04	16.43	0.00	2.136	11.01	1.66	8.8	91.2	0.0	-0.85	0.73	0.89	0.83	1.07	15316	1843	4	21	1	0	0	logfile
✔	7oJJ	12953	2024-02-16	2021-05-16	3.5	4.03	3.58	3.5	0.006	0.66	2.0	0.06	13.63	0.00	2.009	9.47	0.12	11.4	88.6	0.0	-3.69	0.92	0.87	2.01	3.5	0.002	0.60	0.0	0.04	14.92	0.00	2.003	8.11	1.29	7.2	92.8	0.0	-0.59	0.98	0.92	0.88	1.70	14330	1785	1	0	2	0	0	logfile
✔	7EU0	31305	2024-02-22	2021-05-15	3.16	3.23	3.12	3.2	0.003	0.73	0.0	0.04	15.35	0.00	1.565	4.64	0.20	3.6	96.4	0.0	-4.58	0.74	0.78	2.46	3.2	0.002	0.55	0.0	0.04	16.95	0.00	1.988	6.59	2.02	4.6	95.4	0.0	-0.97	0.53	0.77	0.85	2.44	32686	4168	22	81	10	0	0	logfile
✔	7MW2	24060	2024-02-22	2021-05-15	2.97	2.71	—	2.8	0.004	0.68	0.0	0.07	16.06	0.01	1.558	7.12	0.17	3.2	96.6	0.2	-0.24	0.83	0.84	3.65	2.8	0.004	0.66	0.0	0.05	14.17	0.00	2.137	7.48	1.11	3.5	96.3	0.2	-0.04	1.55	0.84	0.87	3.35	33807	4293	33	0	72	0	0	logfile
✔	7oJH	12951	2024-02-14	2021-05-15	3.1	3.40	3.12	3.3	0.011	0.90	0.0	0.05	11.82	0.00	2.240	2.92	0.52	2.9	97.1	0.0	0.37	0.70	0.83	3.56	3.3	0.002	0.52	0.0	0.04	14.86	0.00	2.251	4.69	1.96	2.9	97.1	0.0	1.18	0.99	0.71	0.87	2.70	8999	1138	4	0	5	0	0	logfile
✔	7MVV	24057	2024-02-19	2021-05-15	3.22	4.20	3.24	3.5	0.002	0.36	0.0	0.03	6.43	0.00	2.161	3.07	0.07	1.3	98.7	0.0	-0.66	0.88	0.76	0.50	3.5	0.002	0.50	0.0	0.03	10.83	0.00	2.039	6.48	0.43	2.7	97.3	0.0	3.22	0.92	0.89	0.81	1.07	25764	1609	4	0	0	0	12907	logfile
✔	7EU3	31307	2024-02-24	2021-05-15	3.7	3.95	—	3.9	0.005	0.88	1.0	0.05	14.84	0.01	1.818	12.64	0.05	15.0	84.6	0.5	-4.98	0.63	0.76	1.38	3.9	0.003	0.77	0.0	0.04	16.35	0.00	2.150	11.79	2.42	13.3	86.6	0.1	-2.61	0.58	0.64	0.77	1.09	40775	5338	28	0	66	0	0	logfile
✔	7MVY	24058	2024-02-20	2021-05-15	2.39	3.24	1.97	3.1	0.002	0.39	0.0	0.03	6.61	0.00	2.209	3.28	0.00	0.7	99.3	0.0	-0.54	0.72	0.64	0.92	3.0	0.005	0.64	0.0	0.04	13.95	0.00	1.975	12.80	2.22	3.6	96.4	0.0	1.22	1.63	0.76	0.74	2.06	26555	1694	2	0	0	0	13337	logfile
✔	7EU1	31306	2024-02-21	2021-05-15	3.86	3.93	3.86	3.9	0.003	0.71	0.0	0.05	13.15	0.00	2.070	3.44	0.19	4.9	95.1	0.0	-5.29	0.75	0.78	1.38	3.9	0.003	0.60	0.0	0.04	15.78	0.00	2.029	7.29	2.82	6.6	93.4	0.0	-2.69	0.53	0.77	0.80	1.61	31760	4217	18	0	10	0	0	logfile
✔	7MW6	24064	2024-02-22	2021-05-15	3.22	2.55	—	1.7	0.005	0.84	1.0	0.09	16.60	0.01	1.556	11.05	0.13	5.1	94.2	0.7	-1.15	0.80	0.77	2.91	1.7	0.004	0.73	0.0	0.05	14.33	0.01	2.107	11.68	1.39	5.7	93.8	0.6	-0.53	0.44	0.84	0.84	2.85	35247	4446	45	0	87	0	0	logfile
✔	7MVU	24056	2024-02-19	2021-05-15	3.77	4.87	3.73	4.0	0.002	0.36	0.0	0.03	6.38	0.00	2.187	3.55	0.00	1.1	98.9	0.0	-0.33	0.85	0.73	0.19	4.0	0.002	0.57	0.0	0.03	11.84	0.00	1.921	10.41	1.36	2.7	97.3	0.0	2.74	2.05	0.88	0.82	0.36	25645	1604	2	0	0	0	12841	logfile
✔	7MW5	24063	2024-02-22	2021-05-15	3.42	3.24	—	2.0	0.004	0.73	0.0	0.05	18.47	0.01	2.140	14.20	0.11	8.0	91.5	0.6	-1.83	0.84	0.79	2.29	2.0	0.005	0.75	0.0	0.05	15.49	0.01	2.145	15.56	1.12	9.6	90.1	0.3	-1.53	1.14	0.85	0.82	2.04	33635	4242	41	0	83	0	0	logfile

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