Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7MVZ	24059	2024-02-20	2021-05-15	2.81	3.64	2.78	3.1	0.002	0.48	0.0	0.03	7.60	0.00	2.206	2.84	0.00	1.6	98.4	0.0	-1.11	0.80	0.67	0.58	3.2	0.005	0.66	0.0	0.04	13.94	0.00	1.999	15.90	1.28	4.5	95.5	0.0	0.87	1.84	0.84	0.76	1.51	26733	1707	3	0	0	0	13421	logfile
✔	7MW3	24061	2024-02-22	2021-05-15	3.15	3.04	—	3.0	0.004	0.71	1.0	0.07	15.41	0.01	1.549	7.53	0.33	3.5	96.1	0.4	-0.38	0.82	0.83	3.24	3.0	0.004	0.64	0.0	0.05	13.59	0.00	2.119	8.00	1.14	4.2	95.6	0.2	-0.30	0.33	0.83	0.85	3.04	33825	4295	33	0	72	0	0	logfile
✔	7EU3	31307	2024-02-24	2021-05-15	3.7	3.95	—	3.9	0.005	0.88	1.0	0.05	14.84	0.01	1.818	12.64	0.05	15.0	84.6	0.5	-4.98	0.63	0.76	1.38	3.9	0.003	0.77	0.0	0.04	16.35	0.00	2.150	11.79	2.42	13.3	86.6	0.1	-2.61	0.58	0.64	0.77	1.09	40775	5338	28	0	66	0	0	logfile
✔	7MU1	24001	2024-02-18	2021-05-14	3.3	3.25	—	3.2	0.006	0.65	0.0	0.04	13.49	0.00	2.078	13.28	0.43	3.4	96.6	0.0	0.09	0.86	0.89	3.34	3.2	0.003	0.55	0.0	0.04	15.08	0.00	2.331	7.06	0.34	4.3	95.7	0.0	0.97	0.29	0.86	0.91	3.17	130320	15840	60	0	60	0	0	logfile
✔	7oJ8	12939	2024-02-14	2021-05-14	3.4	3.92	3.48	3.8	0.010	1.14	0.0	0.06	13.09	0.00	2.114	6.59	0.41	5.3	94.2	0.5	-1.11	0.63	0.79	1.90	3.8	0.003	0.66	0.0	0.04	15.01	0.00	2.156	10.32	3.46	4.6	95.4	0.0	0.87	2.83	0.63	0.82	1.45	9148	1150	4	0	7	0	0	logfile
✔	7ETW	31303	2024-02-13	2021-05-14	4.1	4.06	—	4.0	0.009	1.21	1.0	0.08	13.70	0.01	1.843	16.06	1.36	11.6	86.4	1.9	-5.46	0.53	0.72	—	4.0	0.003	0.76	0.0	0.04	11.59	0.00	2.195	9.81	0.00	4.9	94.5	0.6	0.02	3.38	0.54	0.74	—	4952	680	4	0	6	0	0	logfile
✔	7MUE	24006	2024-02-23	2021-05-14	2.8	2.99	—	2.9	0.004	0.78	0.0	0.05	13.97	0.01	2.345	1.38	0.00	3.1	96.9	0.0	-1.29	0.83	0.88	3.94	2.9	0.004	0.63	0.0	0.04	16.33	0.00	2.264	3.27	1.46	3.2	96.8	0.0	1.47	0.45	0.83	0.90	3.52	40266	4626	72	0	864	0	0	logfile
✔	7MUD	24005	2024-02-19	2021-05-14	2.8	2.89	—	2.9	0.003	0.75	0.0	0.05	14.02	0.01	2.294	3.05	0.07	4.7	95.3	0.0	-0.51	0.79	0.85	2.78	2.8	0.002	0.56	0.0	0.04	16.63	0.00	2.185	5.42	1.93	4.7	95.3	0.0	0.68	1.16	0.81	0.88	2.59	134758	17147	130	0	117	0	0	logfile
✔	7MTS	23996	2024-02-16	2021-05-13	3.2	3.09	—	3.0	0.007	0.77	0.0	0.05	13.16	0.01	2.213	4.48	0.13	3.1	96.9	0.0	0.41	0.83	0.84	2.92	3.0	0.004	0.56	0.0	0.04	14.39	0.00	2.192	4.35	1.46	3.6	96.4	0.0	0.53	0.27	0.83	0.86	2.48	16068	2150	7	0	3	0	0	logfile
✔	7oiZ	12936	2024-02-21	2021-05-13	2.9	3.30	—	3.3	0.007	0.83	1.0	0.05	22.40	0.02	1.986	3.75	0.07	3.5	96.4	0.1	-0.63	0.83	0.86	2.92	3.3	0.002	0.60	0.0	0.03	22.31	0.01	1.906	8.61	2.16	3.1	96.9	0.0	0.51	0.39	0.80	0.86	2.32	140295	5604	64	4472	311	0	0	logfile
✔	7ETo	31301	2024-02-22	2021-05-13	4.0	3.89	—	4.0	0.007	0.94	0.0	0.06	14.66	0.01	2.228	7.22	0.70	6.6	93.4	0.0	-4.12	0.40	0.79	—	3.9	0.003	0.70	0.0	0.04	16.88	0.00	2.103	13.38	4.11	4.9	95.1	0.0	-1.04	0.74	0.46	0.84	—	98674	12386	26	0	0	0	0	logfile
✔	7oJ5	12938	2024-02-22	2021-05-13	2.4	2.43	—	2.4	0.002	0.53	0.0	0.04	16.61	0.00	2.177	1.81	1.95	1.6	98.4	0.0	-0.94	0.76	0.87	3.97	2.4	0.005	0.84	0.0	0.05	17.15	0.00	2.112	2.52	2.41	2.7	97.3	0.0	0.64	0.35	0.78	0.89	4.67	35323	4416	72	0	48	931	0	logfile
✔	7MTD	23983	2024-02-17	2021-05-13	3.5	2.75	3.50	3.5	0.007	0.89	0.0	0.06	9.99	0.01	2.308	2.25	0.15	6.5	93.5	0.0	-4.05	0.71	0.81	2.91	3.4	0.003	0.62	0.0	0.04	13.67	0.00	2.198	5.71	1.85	4.3	95.6	0.1	-0.81	1.41	0.72	0.81	2.53	18833	2348	20	0	41	0	0	logfile
✔	7MT7	23976	2024-02-28	2021-05-13	2.71	2.43	—	2.8	0.007	0.86	0.0	0.05	22.81	0.01	2.026	2.68	0.17	6.3	93.6	0.1	-4.19	0.87	0.87	3.93	2.8	0.008	0.70	0.0	0.04	22.49	0.01	1.823	5.49	2.68	6.3	93.6	0.1	-0.67	0.44	0.86	0.88	3.23	149696	5629	71	4912	449	0	0	logfile
✔	7MTE	23984	2024-02-18	2021-05-13	3.2	2.75	3.06	3.1	0.005	0.82	0.0	0.06	9.70	0.01	2.298	2.16	0.04	4.5	95.5	0.0	-3.17	0.74	0.84	3.68	3.1	0.003	0.59	0.0	0.05	13.15	0.00	2.178	4.78	1.51	4.6	95.4	0.0	-0.49	1.37	0.76	0.87	3.17	20612	2568	20	0	42	0	0	logfile
✔	7MTC	23982	2024-02-18	2021-05-13	2.6	2.72	2.59	2.7	0.013	1.14	0.0	0.08	10.88	0.01	2.219	1.55	0.56	6.5	93.5	0.0	-2.84	0.82	0.90	4.78	2.7	0.002	0.60	0.0	0.05	13.45	0.00	2.154	3.89	1.21	3.6	96.4	0.0	0.00	0.55	0.82	0.91	3.90	21178	2642	20	0	42	0	0	logfile
✔	7oJ0	12937	2024-02-25	2021-05-13	3.5	3.49	—	3.3	0.006	0.84	1.0	0.04	22.62	0.02	1.995	7.15	0.16	4.4	95.5	0.1	-1.32	0.87	0.88	2.11	3.3	0.005	0.70	0.0	0.04	22.62	0.01	1.829	15.33	4.71	5.0	94.9	0.1	-0.59	0.37	0.87	0.88	1.82	146507	6266	66	4525	310	0	0	logfile
✔	7MTQ	23994	2024-02-14	2021-05-13	3.65	2.61	—	2.2	0.011	0.88	1.0	0.05	14.58	0.01	2.205	8.45	0.56	3.2	96.8	0.0	0.26	0.70	0.73	2.03	2.2	0.003	0.58	0.0	0.04	14.88	0.00	2.119	7.58	2.11	2.9	97.1	0.0	0.08	0.41	0.71	0.75	1.65	10388	1486	4	0	4	0	0	logfile
✔	7MSW	23970	2024-02-14	2021-05-12	3.76	3.93	3.60	3.8	0.009	0.66	0.0	0.05	10.62	0.00	1.933	0.81	0.00	2.5	97.3	0.2	-0.01	0.79	0.80	1.87	3.8	0.003	0.55	0.0	0.04	14.14	0.00	2.039	6.38	2.03	3.8	96.2	0.0	0.22	0.95	0.79	0.81	1.71	9881	635	1	0	3	0	4959	logfile
✔	7MT3	23975	2024-02-26	2021-05-12	2.8	2.45	—	2.9	0.007	0.80	0.0	0.04	22.33	0.01	1.298	2.40	0.13	7.0	92.9	0.1	-4.52	0.84	0.86	4.06	2.9	0.010	0.77	0.0	0.05	22.42	0.01	0.999	6.20	2.10	7.0	92.9	0.1	-1.39	2.15	0.85	0.87	3.27	147942	5616	68	4835	441	0	0	logfile

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