Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7EL9	31177	2024-02-20	2021-04-09	3.2	3.41	—	3.4	0.003	0.58	2.0	0.04	14.91	0.00	2.202	11.39	2.99	11.0	88.9	0.1	-3.18	0.71	0.75	2.17	3.4	0.004	0.82	0.0	0.04	17.08	0.00	2.072	16.51	3.76	11.0	89.0	0.1	-1.41	0.56	0.72	0.78	1.94	28128	3560	10	14	10	0	0	logfile
✔	7ELB	31179	2024-02-21	2021-04-09	4.1	4.43	—	4.1	0.002	0.59	0.0	0.04	13.34	0.00	2.021	9.17	2.07	8.6	91.4	0.0	-3.36	0.80	0.69	—	4.1	0.003	0.76	0.0	0.04	13.17	0.00	2.090	16.13	0.00	11.5	88.5	0.0	-1.42	1.51	0.83	0.75	—	31012	3972	8	0	10	0	0	logfile
✔	7ELA	31178	2024-02-15	2021-04-09	3.4	3.44	—	3.4	0.003	0.57	0.0	0.04	15.71	0.00	2.153	11.82	2.79	7.9	92.1	0.0	-2.61	0.72	0.78	2.61	3.4	0.003	0.63	0.0	0.04	16.92	0.00	2.175	13.26	3.02	7.0	93.0	0.0	-0.18	0.47	0.73	0.82	2.31	11791	1451	5	7	3	0	0	logfile
✔	7ELE	31182	2024-02-15	2021-04-09	4.9	8.62	—	7.5	0.007	1.16	0.0	0.06	21.73	0.01	2.210	17.86	8.44	9.1	90.1	0.8	-3.55	0.87	0.71	—	7.5	0.003	0.74	0.0	0.04	18.90	0.00	2.058	28.35	0.00	9.5	90.3	0.2	-1.83	1.67	0.88	0.77	—	10733	1137	2	83	0	0	0	logfile
✔	7ELC	31180	2024-02-15	2021-04-09	3.1	3.22	—	3.2	0.003	0.55	0.0	0.04	15.03	0.00	2.198	9.93	2.73	9.3	90.7	0.1	-3.03	0.70	0.80	3.23	3.2	0.003	0.62	0.0	0.04	16.89	0.00	2.103	10.27	4.02	9.3	90.6	0.1	-0.74	0.42	0.70	0.81	2.98	11754	1458	5	7	5	0	0	logfile
✔	7ELD	31181	2024-02-15	2021-04-09	4.6	9.12	—	7.4	0.012	1.41	6.0	0.11	20.42	0.00	2.446	8.52	10.68	2.9	96.2	0.9	3.37	0.79	0.50	—	7.1	0.003	0.72	0.0	0.04	19.06	0.00	2.065	26.98	0.00	5.4	94.1	0.5	-0.07	1.46	0.88	0.78	—	11282	1137	2	109	0	0	0	logfile
✔	7MFD	23813	2024-02-14	2021-04-09	3.66	3.14	—	3.1	0.004	0.67	1.0	0.04	15.47	0.00	2.112	17.69	0.20	7.1	92.9	0.0	-2.17	0.68	0.61	1.02	3.0	0.005	0.77	0.0	0.05	17.42	0.00	2.095	21.43	2.86	7.9	92.1	0.0	-2.31	0.41	0.69	0.62	0.75	9127	1147	6	0	3	0	0	logfile
✔	7MEX	23806	2024-02-16	2021-04-08	3.35	4.06	3.35	3.4	0.003	0.52	0.0	0.04	14.14	0.00	1.562	8.11	0.06	2.2	97.8	0.0	0.70	0.83	0.78	2.31	3.4	0.003	0.57	0.0	0.04	15.27	0.00	2.023	9.37	0.45	2.7	97.3	0.0	1.58	0.51	0.89	0.87	1.94	15941	1967	4	0	7	0	0	logfile
✔	7o5H	12736	2024-02-22	2021-04-08	3.1	2.93	3.04	2.8	0.002	0.33	0.0	0.03	21.63	0.00	1.262	5.88	0.98	2.1	97.9	0.0	1.09	0.86	0.83	1.84	2.8	0.006	0.67	0.0	0.04	22.33	0.01	1.076	13.62	3.21	3.9	96.1	0.0	0.32	1.48	0.87	0.85	1.45	34436	1730	22	964	167	0	0	logfile
✔	7o5B	12734	2024-02-28	2021-04-08	3.33	4.51	—	3.5	0.006	0.98	3.0	0.05	23.96	0.01	2.186	5.13	0.15	2.1	97.7	0.2	-2.61	0.87	0.80	1.19	3.5	0.008	0.83	0.0	0.04	24.32	0.01	1.951	26.59	3.97	9.2	90.7	0.1	-1.44	1.22	0.91	0.89	0.83	150422	6001	57	4884	0	0	0	logfile
✔	7MEZ	23808	2024-02-15	2021-04-08	2.89	3.32	—	3.2	0.003	0.56	0.0	0.04	13.14	0.00	2.187	9.00	0.07	3.3	96.5	0.2	0.61	0.78	0.82	3.00	3.2	0.003	0.57	0.0	0.04	15.43	0.00	2.186	9.24	1.47	4.0	95.8	0.1	0.98	0.36	0.77	0.83	2.59	12361	1536	2	0	0	0	0	logfile
✔	7MF3	23810	2024-02-18	2021-04-08	3.4	4.14	—	3.2	0.003	0.68	0.0	0.04	15.41	0.00	1.985	17.36	0.04	6.5	93.5	0.0	-0.34	0.90	0.73	0.19	3.1	0.002	0.70	0.0	0.04	17.51	0.00	1.949	17.16	1.41	6.9	93.1	0.0	-0.86	1.44	0.91	0.74	0.14	22938	2822	12	0	8	0	0	logfile
✔	7MEP	23801	2024-02-18	2021-04-07	3.5	3.58	3.45	3.5	0.024	1.74	0.0	0.14	11.26	0.01	2.293	0.94	0.00	1.5	98.5	0.0	0.77	0.71	0.85	3.66	3.5	0.007	0.76	0.0	0.05	14.20	0.00	2.075	7.80	2.01	3.6	96.4	0.0	0.06	1.92	0.71	0.85	2.82	21636	2596	35	0	90	0	0	logfile
✔	7MET	23803	2024-02-13	2021-04-07	3.97	4.01	—	3.9	0.004	0.64	0.0	0.04	12.06	0.00	2.236	8.02	0.00	4.2	95.3	0.5	1.22	0.52	0.69	1.68	3.9	0.003	0.66	0.0	0.04	14.92	0.00	2.215	10.98	7.16	5.1	94.3	0.6	0.10	0.44	0.52	0.70	1.68	6521	1019	3	0	2	0	0	logfile
✔	7EKQ	31173	2024-02-20	2021-04-06	3.6	3.09	—	3.0	0.003	0.71	0.0	0.05	13.22	0.01	2.280	4.24	0.14	3.4	96.6	0.0	-5.02	0.68	0.65	0.71	3.0	0.005	0.86	0.0	0.05	16.64	0.00	2.064	14.73	3.24	4.1	95.9	0.0	-0.82	2.10	0.72	0.72	0.90	27663	3583	19	0	0	0	0	logfile
✔	7ME0	23786	2024-02-22	2021-04-06	2.48	2.69	2.55	2.6	0.006	0.55	0.0	0.05	14.32	0.00	2.135	5.82	4.96	2.0	98.0	0.0	-0.22	0.82	0.90	5.65	2.6	0.004	0.57	0.0	0.05	15.33	0.00	2.213	6.27	2.73	1.9	98.1	0.0	0.20	2.52	0.85	0.92	5.67	16386	2082	6	0	0	0	0	logfile
✔	7o4H	12718	2024-02-16	2021-04-06	3.4	4.30	—	4.1	0.005	0.85	0.0	0.05	13.96	0.01	2.106	15.70	0.00	14.3	85.7	0.0	-2.48	0.73	0.77	1.27	4.0	0.004	0.78	0.0	0.04	15.78	0.00	2.134	13.22	3.07	11.3	88.6	0.1	-1.37	0.47	0.73	0.77	1.40	14195	1780	4	0	0	0	0	logfile
✔	7MEM	23792	2024-02-22	2021-04-06	3.2	3.85	3.33	3.6	0.019	1.72	0.0	0.10	10.41	0.01	1.511	0.97	0.00	1.7	98.3	0.0	0.80	0.77	0.74	3.19	3.6	0.003	0.63	0.0	0.04	13.96	0.00	1.985	8.33	1.86	3.8	96.2	0.0	-0.51	1.44	0.74	0.71	2.67	32898	2124	21	0	18	0	16044	logfile
✔	7o4L	12722	2024-02-22	2021-04-06	3.4	3.17	3.35	3.1	0.002	0.45	0.0	0.04	14.10	0.00	2.001	4.13	0.00	2.3	97.7	0.0	2.39	0.69	0.73	2.31	3.1	0.003	0.56	0.0	0.04	16.47	0.00	1.889	8.02	1.89	2.5	97.5	0.0	1.13	0.63	0.72	0.80	2.05	35159	4330	25	20	15	0	0	logfile
✔	7MDU	23780	2024-02-14	2021-04-06	3.3	3.35	3.19	3.3	0.023	1.76	2.0	0.14	10.79	0.01	2.302	1.10	0.00	2.1	97.9	0.0	0.65	0.51	0.86	4.32	3.3	0.003	0.62	0.0	0.04	13.59	0.00	2.150	7.39	3.41	3.4	96.6	0.0	0.01	0.73	0.51	0.88	3.21	8332	1018	17	0	33	0	0	logfile

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