Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7o7o	12751	2024-02-24	2021-04-13	4.8	5.79	—	6.6	0.011	1.24	5.0	0.06	16.35	0.02	1.564	17.48	0.43	17.4	82.1	0.5	-5.42	0.81	0.69	—	6.6	0.003	0.86	0.0	0.05	14.55	0.01	2.094	27.68	0.02	14.3	85.6	0.1	-3.63	1.33	0.81	0.71	—	42642	5376	20	0	52	0	0	logfile
✔	7EMF	31191	2024-02-14	2021-04-13	3.5	3.62	—	3.5	0.011	1.17	16.0	0.07	15.26	0.01	2.207	7.30	1.08	5.6	93.8	0.6	-2.65	0.74	0.71	1.83	3.5	0.003	0.66	0.0	0.04	16.95	0.00	2.151	10.69	3.08	5.5	94.4	0.1	1.19	1.33	0.79	0.79	1.57	62334	7916	29	0	2	0	0	logfile
✔	7o7L	12747	2024-02-24	2021-04-13	4.5	5.42	—	6.7	0.008	1.16	8.0	0.08	16.57	0.02	2.027	13.41	0.49	16.8	82.5	0.7	-5.47	0.80	0.63	—	6.7	0.003	0.88	0.0	0.05	14.80	0.01	2.049	19.04	0.06	11.9	87.9	0.2	-3.58	1.47	0.81	0.67	—	44614	5640	14	0	44	0	0	logfile
✔	7o7S	12755	2024-02-24	2021-04-13	4.3	4.69	—	4.4	0.009	1.28	7.0	0.07	17.31	0.02	1.857	21.65	1.09	20.1	79.2	0.7	-5.96	0.75	0.58	—	4.4	0.004	0.90	0.0	0.05	14.92	0.01	2.066	25.76	0.02	13.7	86.1	0.1	-3.99	1.38	0.76	0.61	—	41466	5236	17	0	44	0	0	logfile
✔	7o7P	12752	2024-02-23	2021-04-13	4.6	5.15	—	6.0	0.009	1.15	2.0	0.08	15.25	0.01	1.908	11.62	0.13	12.6	87.0	0.3	-4.55	0.80	0.69	—	5.8	0.004	0.87	0.0	0.05	14.09	0.01	2.010	27.64	0.04	11.4	88.5	0.1	-2.92	1.50	0.83	0.75	—	40295	5100	16	0	36	0	0	logfile
✔	7o73	12744	2024-02-18	2021-04-12	3.4	3.36	3.51	3.3	0.002	0.44	2.0	0.04	14.45	0.00	1.888	4.22	0.01	2.2	97.8	0.0	1.66	0.79	0.78	1.84	3.3	0.004	0.67	1.0	0.04	16.80	0.00	2.001	11.03	1.78	3.1	96.9	0.0	0.38	1.30	0.80	0.81	1.69	73768	8880	43	130	22	0	0	logfile
✔	7ELL	31184	2024-02-14	2021-04-12	3.8	4.24	—	3.8	0.006	0.86	1.0	0.05	14.83	0.01	1.176	17.74	0.62	8.9	90.9	0.2	-2.13	0.35	0.86	1.77	3.8	0.003	0.72	0.0	0.05	16.08	0.00	2.099	11.13	1.74	4.3	95.7	0.1	0.12	1.30	0.34	0.88	1.91	60584	7917	31	0	10	0	0	logfile
✔	7MGL	23828	2024-02-16	2021-04-12	2.9	3.03	—	3.0	0.013	0.84	0.0	0.04	15.84	0.00	2.177	5.52	3.10	5.1	94.9	0.0	-1.33	0.64	0.84	3.67	3.0	0.004	0.66	0.0	0.04	15.93	0.00	2.180	5.20	2.62	4.8	95.2	0.0	1.54	0.81	0.64	0.86	3.44	15476	1888	8	0	8	0	0	logfile
✔	7o72	12743	2024-02-18	2021-04-12	3.4	3.66	3.39	3.4	0.002	0.47	1.0	0.04	14.40	0.00	1.971	4.02	0.03	2.2	97.8	0.0	1.40	0.86	0.83	1.86	3.4	0.006	0.72	1.0	0.04	16.96	0.00	1.970	13.05	1.43	3.8	96.2	0.0	0.41	0.86	0.87	0.86	1.68	73664	8867	43	130	22	0	0	logfile
✔	7ELM	31185	2024-02-24	2021-04-12	2.88	3.11	—	2.9	0.005	0.78	0.0	0.05	17.11	0.01	1.839	6.41	0.40	6.1	93.9	0.0	-3.08	0.85	0.82	2.81	2.9	0.004	0.60	0.0	0.04	17.75	0.00	2.091	9.17	1.80	6.3	93.7	0.0	0.00	0.45	0.87	0.87	2.50	47399	6201	22	120	0	0	0	logfile
✔	7o6Q	12740	2024-02-13	2021-04-12	1.88	2.21	—	1.9	0.010	0.71	0.0	0.05	12.80	0.01	2.115	4.83	1.25	3.2	96.8	0.0	-1.61	0.88	0.85	7.59	1.9	0.002	0.48	0.0	0.04	14.46	0.00	2.182	4.64	1.25	0.8	99.2	0.0	3.32	0.35	0.90	0.90	5.94	7999	997	8	0	0	399	0	logfile
✔	7MGM	23829	2024-02-19	2021-04-12	3.1	3.35	3.11	3.0	0.004	0.55	0.0	0.04	14.45	0.00	1.874	5.80	0.04	2.4	97.6	0.0	0.78	0.87	0.89	2.62	3.0	0.002	0.43	0.0	0.04	15.03	0.00	1.990	5.57	0.22	1.7	98.3	0.0	1.81	0.23	0.87	0.90	2.42	24079	2964	4	0	6	0	0	logfile
✔	7o6P	12739	2024-02-14	2021-04-12	2.04	2.55	—	2.1	0.008	0.59	0.0	0.05	11.73	0.00	2.140	6.08	0.93	1.8	98.2	0.0	-0.54	0.90	0.88	5.90	2.1	0.003	0.49	0.0	0.04	13.56	0.00	2.244	5.46	0.00	1.9	98.1	0.0	2.05	0.38	0.90	0.92	5.32	8276	1022	8	0	0	268	0	logfile
✔	7ELN	31186	2024-02-25	2021-04-12	3.0	3.28	—	3.1	0.007	0.84	0.0	0.05	17.90	0.01	1.940	6.77	0.58	5.5	94.4	0.1	-3.03	0.86	0.84	2.72	3.1	0.003	0.59	0.0	0.04	18.44	0.00	2.132	9.04	1.69	5.4	94.6	0.0	0.26	1.18	0.87	0.88	2.63	48906	6209	26	172	0	0	0	logfile
✔	7ELH	31183	2024-02-14	2021-04-11	3.3	3.97	—	3.7	0.006	0.82	1.0	0.05	13.49	0.00	1.043	9.19	0.21	3.9	96.1	0.1	0.36	0.35	0.69	3.16	3.6	0.003	0.51	0.0	0.04	15.10	0.00	1.859	27.47	2.75	4.0	96.0	0.0	1.20	1.14	0.38	0.89	2.65	114995	13378	27	310	1	0	3098	logfile
✔	7o6E	12738	2024-02-22	2021-04-10	2.1	1.78	2.15	1.6	0.017	1.10	0.0	0.07	18.13	0.01	2.110	3.49	0.00	2.3	97.7	0.0	2.10	0.87	0.88	6.02	1.6	0.003	0.47	0.0	0.03	18.19	0.00	2.218	3.52	0.58	0.5	99.5	0.0	4.44	0.29	0.88	0.89	5.30	35304	4248	48	0	0	1392	0	logfile
✔	7MFM	23817	2024-02-22	2021-04-10	2.42	3.06	—	2.9	0.018	0.82	0.0	0.30	17.92	0.00	1.938	5.24	2.10	5.1	94.8	0.1	1.25	0.64	0.84	3.33	2.9	0.004	0.78	1.0	0.06	17.70	0.00	1.749	6.91	1.78	5.2	94.7	0.1	0.89	0.35	0.61	0.83	3.41	100025	6406	14	0	10	0	49785	logfile
✔	7o6B	12737	2024-02-16	2021-04-09	3.88	4.21	4.15	3.8	0.003	0.67	0.0	0.04	11.54	0.01	2.128	6.00	0.38	4.3	95.7	0.0	-0.87	0.75	0.67	0.37	3.8	0.003	0.56	0.0	0.04	14.18	0.00	1.998	10.09	2.15	4.7	95.3	0.0	0.51	0.77	0.76	0.70	0.37	14200	879	1	0	0	0	7040	logfile
✔	7MFE	23814	2024-02-13	2021-04-09	4.07	3.82	—	3.8	0.002	0.59	0.0	0.04	15.26	0.00	1.387	18.00	0.41	6.6	93.4	0.0	-2.56	0.63	0.64	—	3.8	0.007	0.89	0.0	0.05	15.53	0.01	2.075	20.79	0.14	8.4	91.6	0.0	-1.88	1.47	0.63	0.65	—	6844	859	4	0	2	0	0	logfile
✔	7ELC	31180	2024-02-15	2021-04-09	3.1	3.22	—	3.2	0.003	0.55	0.0	0.04	15.03	0.00	2.198	9.93	2.73	9.3	90.7	0.1	-3.03	0.70	0.80	3.23	3.2	0.003	0.62	0.0	0.04	16.89	0.00	2.103	10.27	4.02	9.3	90.6	0.1	-0.74	0.42	0.70	0.81	2.98	11754	1458	5	7	5	0	0	logfile

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