Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7Mi6	23841	2024-02-21	2021-04-16	3.9	4.23	3.91	4.0	0.012	1.49	3.0	0.08	13.68	0.01	2.027	6.46	1.32	5.3	94.3	0.4	-2.30	0.84	0.82	1.35	4.0	0.003	0.75	0.0	0.04	16.35	0.00	1.972	15.09	2.40	3.8	96.2	0.0	0.55	1.06	0.85	0.83	1.37	19653	2419	1	0	4	0	0	logfile
✔	7ENF	31209	2024-02-20	2021-04-16	2.76	3.23	—	3.1	0.010	0.95	5.0	0.06	19.13	0.01	2.192	10.41	0.53	5.3	94.7	0.0	-1.36	0.77	0.83	2.80	3.1	0.003	0.63	0.0	0.05	14.86	0.00	2.183	7.42	1.80	4.2	95.8	0.0	-0.20	0.43	0.75	0.82	2.46	26619	3390	21	0	53	0	0	logfile
✔	7ENG	31210	2024-02-13	2021-04-16	3.59	3.86	—	3.8	0.007	0.83	0.0	0.05	17.37	0.00	2.204	14.32	0.36	7.4	92.6	0.0	-2.69	0.55	0.79	2.68	3.8	0.003	0.62	0.0	0.04	15.74	0.00	2.154	11.23	2.72	5.5	94.5	0.0	-1.90	1.61	0.52	0.75	1.96	4954	640	4	0	2	0	0	logfile
✔	7MiF	23848	2024-02-22	2021-04-16	3.1	3.02	—	3.1	0.016	2.04	13.0	0.13	14.52	0.01	1.947	4.14	1.48	3.7	95.6	0.7	-1.46	0.52	0.69	3.93	3.1	0.004	0.61	0.0	0.04	16.15	0.01	1.908	8.31	1.74	3.0	97.0	0.0	1.03	1.41	0.57	0.77	3.32	34284	2136	8	0	12	0	17036	logfile
✔	7MiG	23850	2024-02-22	2021-04-16	2.9	2.98	—	2.9	0.015	2.05	12.0	0.12	15.00	0.01	1.947	3.53	1.48	3.6	96.0	0.4	-1.46	0.59	0.74	4.32	2.9	0.003	0.57	0.0	0.04	17.22	0.00	1.940	5.69	2.06	2.4	97.6	0.0	0.77	1.33	0.63	0.80	3.66	34272	2136	8	0	12	0	17020	logfile
✔	7Mi4	23839	2024-02-17	2021-04-16	3.2	3.56	—	3.5	0.009	0.98	0.0	0.05	18.97	0.01	1.590	13.93	5.83	8.4	91.5	0.1	-1.33	0.79	0.83	2.21	3.5	0.004	0.63	0.0	0.04	18.63	0.00	2.085	9.38	1.33	6.3	93.6	0.1	-0.15	1.35	0.78	0.84	2.29	17162	1978	15	70	10	0	0	logfile
✔	7Mii	23852	2024-02-21	2021-04-16	2.7	2.70	—	2.7	0.015	2.12	36.0	0.13	15.50	0.01	1.830	6.30	1.83	3.5	96.5	0.0	-2.07	0.60	0.73	4.21	2.7	0.003	0.62	0.0	0.08	16.79	0.00	1.998	5.90	1.72	2.1	97.9	0.0	-0.25	1.44	0.63	0.79	3.15	32208	1992	8	0	12	0	16108	logfile
✔	7Mi9	23843	2024-02-16	2021-04-16	3.89	3.92	—	3.7	0.006	0.91	1.0	0.05	24.16	0.01	2.008	38.70	2.08	13.2	86.3	0.6	-3.37	0.70	0.48	0.55	3.6	0.004	0.84	0.0	0.04	24.45	0.01	2.025	25.38	2.39	9.0	90.9	0.1	-2.47	2.54	0.75	0.61	1.18	15924	1554	10	170	0	0	0	logfile
✔	7MiH	23851	2024-02-21	2021-04-16	2.8	2.86	—	2.8	0.014	2.10	28.0	0.13	14.40	0.01	1.943	6.11	1.84	4.1	95.9	0.0	-2.16	0.59	0.73	4.34	2.8	0.003	0.57	0.0	0.05	16.64	0.00	1.854	5.82	2.37	3.4	96.6	0.0	-0.08	0.91	0.62	0.79	3.54	31256	1936	8	0	12	0	15640	logfile
✔	7EN1	31199	2024-02-24	2021-04-15	3.47	3.85	3.42	3.6	0.013	1.97	7.0	0.10	15.11	0.02	1.796	0.83	1.72	5.2	94.6	0.3	-2.33	0.86	0.77	2.39	3.6	0.003	0.64	0.0	0.04	15.24	0.00	1.187	12.48	0.94	4.7	95.3	0.0	0.04	0.79	0.86	0.80	2.03	40862	2656	4	0	8	0	20419	logfile
✔	7EMY	31198	2024-02-24	2021-04-15	2.97	3.54	3.03	3.3	0.037	2.79	474.0	0.36	12.07	0.01	1.794	3.58	0.88	4.5	95.5	0.0	-0.76	0.85	0.79	3.08	3.3	0.004	0.61	0.0	0.04	13.87	0.00	1.841	13.08	0.83	4.6	95.4	0.0	0.84	0.70	0.85	0.81	2.74	41020	2670	4	0	8	0	20502	logfile
✔	7EN2	31200	2024-02-24	2021-04-15	3.78	3.93	3.86	3.6	0.013	1.99	12.0	0.10	15.84	0.02	2.510	0.88	2.21	7.2	92.3	0.5	-2.76	0.83	0.72	1.27	3.6	0.003	0.66	1.0	0.04	15.90	0.00	1.895	14.87	1.82	5.6	94.4	0.0	-0.44	0.77	0.85	0.75	1.01	42019	2731	4	0	4	0	21010	logfile
✔	7EN0	31197	2024-02-13	2021-04-15	2.97	3.38	3.13	3.4	0.006	1.06	0.0	0.05	17.73	0.00	2.299	8.99	4.80	4.2	95.1	0.6	-3.26	0.50	0.77	2.43	3.3	0.003	0.61	0.0	0.04	17.60	0.00	2.295	7.21	1.60	3.5	96.5	0.0	0.96	0.47	0.57	0.81	2.34	7239	939	6	0	6	0	0	logfile
✔	7MGZ	23831	2024-02-22	2021-04-14	2.8	2.90	—	2.9	0.014	2.03	8.0	0.11	16.60	0.02	1.574	3.95	1.66	3.4	96.5	0.2	-1.41	0.59	0.76	4.35	2.9	0.004	0.78	1.0	0.07	17.32	0.00	1.840	8.28	1.46	2.9	97.1	0.0	0.37	1.76	0.58	0.80	3.67	34852	2172	8	0	16	0	17316	logfile
✔	7MH1	23833	2024-02-22	2021-04-14	2.8	2.84	—	2.9	0.012	2.03	7.0	0.11	16.82	0.02	2.037	1.79	1.44	4.3	95.7	0.0	-1.16	0.61	0.77	4.82	2.9	0.003	0.62	0.0	0.04	17.16	0.00	1.915	5.71	2.53	3.5	96.5	0.0	0.84	0.82	0.61	0.79	3.91	35636	2228	8	0	16	0	17800	logfile
✔	7o85	12761	2024-02-20	2021-04-14	3.3	3.50	—	3.5	0.002	0.48	0.0	0.04	13.51	0.00	1.470	7.44	0.00	3.3	96.7	0.0	-0.25	0.71	0.75	2.90	3.5	0.003	0.56	0.0	0.04	15.44	0.00	2.145	9.89	2.49	4.5	95.5	0.0	-0.73	0.51	0.73	0.80	3.22	28525	3843	28	0	14	0	0	logfile
✔	7o7L	12747	2024-02-24	2021-04-13	4.5	5.42	—	6.7	0.008	1.16	8.0	0.08	16.57	0.02	2.027	13.41	0.49	16.8	82.5	0.7	-5.47	0.80	0.63	—	6.7	0.003	0.88	0.0	0.05	14.80	0.01	2.049	19.04	0.06	11.9	87.9	0.2	-3.58	1.47	0.81	0.67	—	44614	5640	14	0	44	0	0	logfile
✔	7o7R	12754	2024-02-23	2021-04-13	3.9	4.51	—	4.3	0.013	1.33	8.0	0.07	16.90	0.01	1.912	20.97	1.07	18.3	81.4	0.3	-5.78	0.83	0.75	0.13	4.3	0.003	0.92	0.0	0.05	17.17	0.00	1.989	20.66	3.76	9.6	90.3	0.1	-3.27	0.83	0.83	0.76	0.23	40530	5126	16	0	40	0	0	logfile
✔	7o7S	12755	2024-02-24	2021-04-13	4.3	4.69	—	4.4	0.009	1.28	7.0	0.07	17.31	0.02	1.857	21.65	1.09	20.1	79.2	0.7	-5.96	0.75	0.58	—	4.4	0.004	0.90	0.0	0.05	14.92	0.01	2.066	25.76	0.02	13.7	86.1	0.1	-3.99	1.38	0.76	0.61	—	41466	5236	17	0	44	0	0	logfile
✔	7o7P	12752	2024-02-23	2021-04-13	4.6	5.15	—	6.0	0.009	1.15	2.0	0.08	15.25	0.01	1.908	11.62	0.13	12.6	87.0	0.3	-4.55	0.80	0.69	—	5.8	0.004	0.87	0.0	0.05	14.09	0.01	2.010	27.64	0.04	11.4	88.5	0.1	-2.92	1.50	0.83	0.75	—	40295	5100	16	0	36	0	0	logfile

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