Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7oAN	12777	2024-02-20	2021-04-19	3.0	3.72	—	3.3	0.011	1.13	0.0	0.08	13.39	0.00	2.066	8.15	1.35	4.0	95.8	0.2	-0.73	0.88	0.87	2.70	3.3	0.004	0.61	0.0	0.05	13.84	0.00	2.134	8.66	1.22	4.2	95.8	0.0	0.34	1.21	0.87	0.87	2.51	28203	3510	24	0	66	0	0	logfile
✔	7oAE	12775	2024-02-15	2021-04-19	2.0	2.65	—	2.2	0.008	0.53	0.0	0.05	9.44	0.00	2.440	0.99	0.00	2.6	97.4	0.0	0.22	0.77	0.91	6.46	2.2	0.002	0.51	0.0	0.04	14.93	0.00	2.243	6.08	0.61	1.5	98.5	0.0	0.51	2.66	0.78	0.93	6.29	12768	1680	42	0	0	0	0	logfile
✔	7oAG	12776	2024-02-13	2021-04-19	3.4	3.78	—	3.4	0.007	0.67	0.0	0.05	10.39	0.00	2.321	5.52	0.00	5.3	94.7	0.0	-0.35	0.81	0.88	3.22	3.4	0.004	0.59	0.0	0.04	13.07	0.00	2.254	7.93	0.65	2.7	97.3	0.0	0.11	2.10	0.82	0.90	4.47	7600	1000	25	0	0	0	0	logfile
✔	7ENN	31217	2024-02-16	2021-04-18	2.8	3.21	—	3.1	0.006	0.68	0.0	0.04	25.22	0.00	2.127	7.99	0.00	4.5	95.4	0.1	-0.16	0.84	0.87	4.06	3.1	0.004	0.60	0.0	0.04	26.00	0.00	2.092	6.63	2.10	4.5	95.5	0.0	0.92	0.30	0.84	0.90	3.50	16319	1300	12	292	2	0	0	logfile
✔	7Mio	23858	2024-02-18	2021-04-17	3.48	3.47	—	3.4	0.011	1.32	0.0	0.05	18.15	0.01	2.363	4.23	0.34	4.3	95.7	0.0	-5.90	0.62	0.87	3.96	3.4	0.002	0.56	0.0	0.04	16.74	0.00	2.236	7.16	2.12	3.0	97.0	0.0	-0.66	0.59	0.63	0.88	2.68	22945	2636	8	0	29	0	0	logfile
✔	7MiV	23866	2024-02-22	2021-04-17	2.8	2.89	—	2.9	0.014	2.06	4.0	0.13	14.66	0.01	1.947	1.95	1.69	3.5	96.3	0.2	-1.26	0.55	0.75	4.80	2.9	0.003	0.57	0.0	0.04	16.79	0.00	1.880	5.11	1.06	1.6	98.4	0.0	0.54	1.32	0.58	0.80	4.05	34820	2172	8	0	12	0	17412	logfile
✔	7MiP	23859	2024-02-22	2021-04-17	2.4	2.51	—	2.5	0.015	2.04	8.0	0.13	14.66	0.01	1.950	2.53	1.04	3.4	96.4	0.2	-1.24	0.58	0.74	4.56	2.5	0.003	0.59	0.0	0.04	17.38	0.00	1.921	6.00	1.72	1.5	98.5	0.0	0.78	1.36	0.62	0.81	4.06	34800	2164	8	0	12	0	17328	logfile
✔	7MiL	23855	2024-02-18	2021-04-17	3.86	3.21	—	3.2	0.007	1.17	0.0	0.05	13.07	0.01	2.304	2.86	0.68	4.4	95.4	0.2	-5.90	0.75	0.77	2.34	3.2	0.003	0.66	0.0	0.04	16.18	0.00	2.103	7.43	3.61	6.1	93.9	0.0	-1.47	1.75	0.75	0.79	1.71	21753	2624	8	0	9	0	0	logfile
✔	7MiK	23854	2024-02-18	2021-04-17	3.12	3.08	—	3.2	0.010	1.47	0.0	0.05	20.36	0.01	2.170	4.32	0.53	4.1	95.9	0.0	-6.20	0.68	0.82	4.22	3.2	0.003	0.60	0.0	0.04	17.31	0.00	2.191	5.81	0.74	3.1	96.9	0.0	0.03	1.04	0.73	0.87	3.02	22728	2560	8	0	40	0	0	logfile
✔	7MiN	23857	2024-02-18	2021-04-17	3.09	3.25	—	3.2	0.011	1.46	0.0	0.05	20.42	0.01	2.303	4.34	0.18	4.6	95.3	0.2	-6.07	0.75	0.89	4.45	3.2	0.002	0.56	0.0	0.04	16.84	0.00	2.123	5.00	0.92	3.6	96.4	0.0	0.71	0.66	0.73	0.89	2.99	22728	2560	8	0	40	0	0	logfile
✔	7MiJ	23853	2024-02-18	2021-04-17	1.98	1.95	—	2.0	0.010	1.38	4.0	0.05	20.53	0.01	2.320	3.08	0.18	2.8	97.2	0.0	-3.96	0.75	0.81	5.48	2.0	0.003	0.59	0.0	0.04	18.64	0.00	2.163	5.38	1.40	3.1	96.9	0.0	0.91	1.08	0.77	0.84	4.95	23010	2556	12	0	38	328	0	logfile
✔	7MiT	23864	2024-02-18	2021-04-17	3.4	3.50	—	3.5	0.010	1.16	0.0	0.05	18.50	0.01	2.057	8.11	0.00	6.6	93.4	0.0	-0.87	0.59	0.80	2.57	3.5	0.005	0.61	0.0	0.05	17.62	0.00	2.023	8.20	2.70	5.1	94.9	0.0	0.32	0.45	0.61	0.84	2.06	21447	2812	11	0	34	0	0	logfile
✔	7MiM	23856	2024-02-18	2021-04-17	3.42	3.40	—	3.4	0.010	1.37	0.0	0.05	19.54	0.01	2.327	3.40	0.00	5.3	94.6	0.2	-5.95	0.61	0.79	3.00	3.4	0.002	0.55	0.0	0.04	16.83	0.00	2.192	5.45	0.92	3.9	96.1	0.0	0.42	1.24	0.68	0.86	1.83	22728	2560	8	0	40	0	0	logfile
✔	7MiS	23863	2024-02-19	2021-04-17	2.8	2.48	—	2.8	0.003	0.50	0.0	0.04	14.71	0.00	1.917	3.78	0.00	3.8	96.2	0.0	0.91	0.69	0.80	3.35	2.8	0.003	0.49	0.0	0.04	16.11	0.00	1.846	3.36	0.63	3.7	96.3	0.0	1.09	0.35	0.70	0.82	3.11	25893	1616	6	0	6	0	12854	logfile
✔	7ENJ	31211	2024-02-14	2021-04-17	4.4	4.62	—	4.0	0.011	1.18	16.0	0.07	15.29	0.01	2.211	7.81	1.23	5.7	93.7	0.6	-2.67	0.75	0.49	—	4.1	0.007	0.84	0.0	0.04	14.13	0.01	2.038	19.19	0.02	6.0	93.9	0.2	0.74	0.78	0.83	0.70	—	57971	7340	27	0	21	0	0	logfile
✔	7MiR	23862	2024-02-19	2021-04-17	2.5	2.44	—	2.6	0.003	0.48	0.0	0.04	14.43	0.00	1.947	2.91	0.00	3.2	96.8	0.0	1.82	0.72	0.81	3.71	2.6	0.004	0.52	0.0	0.04	16.05	0.00	1.904	3.30	0.99	3.7	96.3	0.0	1.49	1.14	0.74	0.84	3.62	25745	1603	5	0	5	0	12748	logfile
✔	7Mi3	23838	2024-02-14	2021-04-16	3.5	3.72	3.45	3.6	0.012	1.47	0.0	0.08	13.20	0.01	1.978	5.17	1.94	6.8	92.8	0.3	-1.80	0.85	0.86	3.53	3.6	0.003	0.71	0.0	0.04	15.23	0.00	2.004	9.73	3.04	4.4	95.6	0.0	0.83	2.29	0.85	0.87	2.78	9682	1192	1	0	4	0	0	logfile
✔	7Mi6	23841	2024-02-21	2021-04-16	3.9	4.23	3.91	4.0	0.012	1.49	3.0	0.08	13.68	0.01	2.027	6.46	1.32	5.3	94.3	0.4	-2.30	0.84	0.82	1.35	4.0	0.003	0.75	0.0	0.04	16.35	0.00	1.972	15.09	2.40	3.8	96.2	0.0	0.55	1.06	0.85	0.83	1.37	19653	2419	1	0	4	0	0	logfile
✔	7Mi4	23839	2024-02-17	2021-04-16	3.2	3.56	—	3.5	0.009	0.98	0.0	0.05	18.97	0.01	1.590	13.93	5.83	8.4	91.5	0.1	-1.33	0.79	0.83	2.21	3.5	0.004	0.63	0.0	0.04	18.63	0.00	2.085	9.38	1.33	6.3	93.6	0.1	-0.15	1.35	0.78	0.84	2.29	17162	1978	15	70	10	0	0	logfile
✔	7Mii	23852	2024-02-21	2021-04-16	2.7	2.70	—	2.7	0.015	2.12	36.0	0.13	15.50	0.01	1.830	6.30	1.83	3.5	96.5	0.0	-2.07	0.60	0.73	4.21	2.7	0.003	0.62	0.0	0.08	16.79	0.00	1.998	5.90	1.72	2.1	97.9	0.0	-0.25	1.44	0.63	0.79	3.15	32208	1992	8	0	12	0	16108	logfile

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