Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

Table content is loading...

Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7MK9	23887	2024-02-23	2021-04-22	3.54	5.05	3.47	4.9	0.005	0.80	0.0	0.05	16.82	0.00	1.243	19.59	0.19	10.3	89.6	0.1	-1.38	0.79	0.70	0.74	4.9	0.003	0.81	0.0	0.04	18.83	0.00	2.101	16.83	2.33	9.3	90.7	0.0	-1.02	0.74	0.80	0.76	0.66	36122	4319	24	95	10	0	0	logfile
✔	7EoS	31229	2024-02-19	2021-04-22	3.9	4.43	—	3.9	0.002	0.42	0.0	0.04	9.75	0.00	2.254	6.49	1.89	4.1	95.8	0.1	0.47	0.88	0.78	1.32	4.0	0.002	0.65	0.0	0.04	12.37	0.00	2.048	12.13	1.93	5.5	94.4	0.1	-0.39	1.68	0.90	0.82	1.19	24600	3106	8	0	18	0	0	logfile
✔	7EoR	31228	2024-02-19	2021-04-22	4.0	4.40	—	4.1	0.002	0.44	0.0	0.04	9.48	0.00	2.227	7.42	1.64	3.2	96.8	0.0	0.66	0.86	0.76	—	4.1	0.003	0.70	0.0	0.04	13.30	0.00	2.129	13.13	1.75	5.0	95.0	0.0	-0.54	0.86	0.88	0.81	—	24204	3030	8	0	16	0	0	logfile
✔	7oBA	12796	2024-02-22	2021-04-21	3.1	3.95	3.15	3.4	0.011	1.14	0.0	0.07	11.31	0.01	2.250	5.33	0.48	8.0	92.0	0.0	-4.57	0.83	0.74	3.14	3.4	0.005	0.75	0.0	0.05	14.18	0.00	2.105	13.62	2.44	6.0	94.0	0.0	-1.29	0.83	0.87	0.85	2.38	35679	4477	19	0	7	0	0	logfile
✔	7MK2	23884	2024-02-13	2021-04-21	3.8	3.60	3.84	3.6	0.004	0.69	0.0	0.04	14.23	0.00	2.228	8.87	0.00	7.7	92.3	0.0	-1.60	0.63	0.77	0.81	3.6	0.003	0.64	0.0	0.04	16.16	0.00	2.216	8.59	2.62	5.1	94.9	0.0	-0.62	1.43	0.62	0.76	0.79	5333	708	4	0	2	0	0	logfile
✔	7oB9	12795	2024-02-23	2021-04-21	2.7	3.23	2.76	2.9	0.013	1.11	0.0	0.06	12.88	0.01	2.041	4.45	0.55	5.5	94.5	0.0	-3.33	0.87	0.87	4.67	2.9	0.003	0.67	0.0	0.04	15.68	0.00	1.948	9.57	1.69	4.4	95.6	0.0	0.08	1.05	0.86	0.90	3.55	36345	4397	21	69	7	0	0	logfile
✔	7oB4	12794	2024-02-14	2021-04-21	3.22	3.25	—	3.5	0.009	1.03	0.0	0.07	13.89	0.00	2.206	23.16	0.09	3.7	96.3	0.0	-4.30	0.54	0.78	4.06	3.5	0.005	0.74	0.0	0.05	15.14	0.00	2.138	18.74	2.93	6.8	93.2	0.0	-3.87	1.18	0.44	0.75	4.68	10066	1288	14	0	0	0	0	logfile
✔	7oBB	12797	2024-02-22	2021-04-21	3.3	3.99	3.32	3.5	0.010	1.12	3.0	0.07	11.91	0.01	2.236	5.46	0.64	7.8	92.2	0.0	-4.18	0.83	0.72	2.04	3.5	0.003	0.72	0.0	0.04	14.53	0.00	2.097	12.96	1.89	5.6	94.4	0.0	-0.94	0.86	0.88	0.85	2.35	33048	4113	20	17	7	0	0	logfile
✔	7MJo	23880	2024-02-17	2021-04-20	4.0	4.18	—	4.1	0.008	1.06	0.0	0.05	16.27	0.01	1.857	8.45	0.00	9.0	91.0	0.0	-1.30	0.57	0.76	—	4.1	0.003	0.61	0.0	0.04	15.75	0.00	2.180	7.06	3.44	6.5	93.5	0.0	-0.49	2.38	0.58	0.77	—	19977	2981	13	0	25	0	0	logfile
✔	7MJJ	23875	2024-02-21	2021-04-20	3.32	4.04	—	3.5	0.004	0.76	0.0	0.05	12.85	0.01	2.278	3.23	0.00	3.2	96.8	0.0	-0.70	0.84	0.81	1.90	3.5	0.003	0.60	0.0	0.04	14.02	0.00	2.034	9.51	1.16	2.8	97.2	0.0	0.49	1.27	0.85	0.84	1.73	31680	3968	28	0	60	0	0	logfile
✔	7MJM	23878	2024-02-22	2021-04-20	2.83	3.74	—	3.0	0.004	0.78	0.0	0.05	13.35	0.01	2.285	2.96	0.00	2.7	97.3	0.0	-0.95	0.83	0.79	2.12	3.1	0.008	0.74	0.0	0.05	14.77	0.00	2.076	12.66	0.69	3.9	96.1	0.0	0.19	1.59	0.84	0.82	2.19	35096	4312	28	0	68	0	0	logfile
✔	7MJG	23872	2024-02-19	2021-04-20	2.81	3.69	—	3.2	0.005	0.78	0.0	0.05	12.89	0.01	2.284	2.77	0.00	2.8	97.2	0.0	-0.64	0.86	0.82	2.69	3.2	0.003	0.56	0.0	0.04	13.65	0.00	2.174	6.91	0.73	2.3	97.7	0.0	0.74	2.31	0.86	0.83	2.39	25260	3120	24	0	60	0	0	logfile
✔	7MJi	23874	2024-02-13	2021-04-20	2.81	3.32	—	3.2	0.006	0.81	0.0	0.05	12.49	0.01	2.367	2.85	0.00	2.8	97.2	0.0	-0.83	0.56	0.84	4.52	3.2	0.003	0.58	0.0	0.04	15.34	0.00	2.309	8.75	2.57	2.2	97.8	0.0	0.13	1.43	0.57	0.85	4.44	2522	320	3	0	1	0	0	logfile
✔	7MJL	23877	2024-02-13	2021-04-20	2.95	3.62	—	3.3	0.005	0.82	0.0	0.05	12.25	0.01	2.351	2.77	0.00	3.9	96.1	0.0	-0.85	0.80	0.87	3.95	3.3	0.004	0.57	0.0	0.04	14.76	0.00	2.158	6.59	1.51	3.4	96.6	0.0	0.06	0.38	0.80	0.88	3.52	4788	621	4	0	1	0	0	logfile
✔	7MJP	23881	2024-02-16	2021-04-20	4.2	4.40	—	4.3	0.008	1.11	0.0	0.07	10.54	0.01	1.477	2.76	0.00	9.1	90.9	0.0	-1.16	0.51	0.65	—	4.4	0.002	0.62	0.0	0.05	8.27	0.00	2.278	0.82	0.00	8.1	91.9	0.0	-0.47	0.45	0.56	0.70	—	14163	2818	10	0	8	0	0	logfile
✔	7MJK	23876	2024-02-22	2021-04-20	2.73	3.61	—	2.9	0.004	0.79	0.0	0.06	12.85	0.01	2.307	2.87	0.00	3.0	97.0	0.0	-0.85	0.86	0.82	2.65	2.9	0.003	0.57	0.0	0.04	13.91	0.00	2.163	9.42	0.63	2.1	97.9	0.0	0.53	1.18	0.87	0.84	2.66	34878	4389	30	0	60	0	0	logfile
✔	7MJH	23873	2024-02-20	2021-04-20	2.66	3.49	—	3.0	0.005	0.77	0.0	0.05	13.18	0.01	2.266	3.37	0.00	3.0	97.0	0.0	-0.62	0.82	0.82	2.50	3.1	0.003	0.63	0.0	0.04	14.46	0.00	2.201	9.56	0.98	2.7	97.3	0.0	0.58	1.19	0.82	0.83	2.32	28143	3495	27	0	60	0	0	logfile
✔	7MJN	23879	2024-02-13	2021-04-20	3.29	4.21	—	3.7	0.005	0.84	0.0	0.05	13.38	0.01	2.295	3.37	0.00	2.4	97.6	0.0	-1.29	0.88	0.85	2.95	3.8	0.004	0.63	0.0	0.04	14.46	0.00	2.213	10.12	0.71	2.8	97.1	0.1	1.28	0.36	0.88	0.86	2.57	6526	797	4	0	5	0	0	logfile
✔	7MJS	23883	2024-02-13	2021-04-20	3.03	3.31	3.09	3.2	0.005	0.94	1.0	0.06	13.97	0.01	2.228	8.63	0.00	4.7	95.3	0.0	-3.02	0.63	0.83	3.58	3.2	0.003	0.57	0.0	0.04	15.36	0.00	2.193	8.91	3.04	3.9	96.1	0.0	0.30	0.37	0.63	0.84	2.85	5536	703	3	0	3	0	0	logfile
✔	7MJQ	23882	2024-02-16	2021-04-20	4.2	4.29	—	4.2	0.009	1.55	0.0	0.15	11.99	0.01	1.552	6.01	0.00	9.4	90.6	0.0	-1.25	0.52	0.66	—	4.2	0.004	0.86	0.0	0.05	10.81	0.00	2.153	3.53	0.00	17.7	82.2	0.0	-2.65	1.83	0.60	0.76	—	14976	2982	13	0	10	0	0	logfile

• ← previous
• Page 354 of 588
• next →