Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7EPC	31237	2024-02-16	2021-04-26	4.0	3.34	—	3.7	0.002	0.50	0.0	0.04	11.28	0.00	2.295	4.60	0.00	2.5	97.5	0.0	-2.98	0.62	0.48	—	3.7	0.003	0.67	0.0	0.04	14.72	0.00	2.170	8.08	2.29	3.8	96.2	0.0	-0.61	1.66	0.72	0.70	—	11216	1564	2	0	0	0	0	logfile
✔	7EPB	31236	2024-02-16	2021-04-26	3.1	3.55	—	3.4	0.004	0.62	0.0	0.06	13.84	0.00	2.292	8.87	0.08	4.5	95.5	0.0	-1.65	0.63	0.74	1.33	3.3	0.005	0.72	0.0	0.04	15.54	0.00	2.144	16.91	3.67	7.6	92.4	0.0	-0.89	0.63	0.67	0.82	1.67	13104	1794	6	0	2	0	0	logfile
✔	7oCF	12806	2024-02-17	2021-04-26	3.6	3.48	—	3.5	0.018	0.95	0.0	0.11	14.25	0.00	2.067	5.05	0.00	4.2	95.8	0.0	0.18	0.68	0.78	3.00	3.5	0.003	0.58	0.0	0.04	14.83	0.00	2.085	6.79	2.89	2.6	97.4	0.0	1.09	1.24	0.69	0.82	2.58	17088	2298	15	0	30	0	0	logfile
✔	7MKQ	23903	2024-02-22	2021-04-26	4.8	4.92	—	4.8	0.004	0.91	1.0	0.05	15.07	0.01	2.010	16.81	1.16	7.0	92.6	0.4	-2.42	0.81	0.79	—	4.8	0.003	0.76	0.0	0.04	14.32	0.00	1.988	19.44	0.03	7.0	92.9	0.1	-0.66	1.00	0.83	0.84	—	32822	4182	7	0	3	0	0	logfile
✔	7MKo	23901	2024-02-20	2021-04-26	3.15	3.25	—	3.2	0.007	1.05	2.0	0.06	17.25	0.01	1.275	21.51	1.22	7.9	91.6	0.5	-2.39	0.71	0.77	1.76	3.2	0.004	0.84	3.0	0.05	18.40	0.01	1.985	13.73	2.58	6.0	93.8	0.2	-0.47	1.44	0.73	0.83	1.23	26269	3194	9	62	4	0	0	logfile
✔	7oCH	12807	2024-02-14	2021-04-26	3.14	3.53	3.21	3.2	0.003	0.54	0.0	0.04	15.97	0.00	2.072	3.99	3.80	6.6	93.4	0.0	-2.88	0.89	0.86	2.83	3.2	0.003	0.57	0.0	0.04	16.42	0.00	2.018	4.31	3.61	7.5	92.5	0.0	0.17	0.48	0.90	0.90	2.46	9516	1181	1	0	2	0	0	logfile
✔	7oCC	12803	2024-02-15	2021-04-26	3.4	2.93	—	3.3	0.010	0.76	0.0	0.05	19.50	0.00	2.143	5.09	0.39	3.1	96.9	0.0	-1.15	0.73	0.78	4.01	3.2	0.003	0.57	0.0	0.04	14.26	0.00	2.254	4.95	1.64	2.5	97.5	0.0	0.81	1.59	0.75	0.84	4.23	11202	1480	14	0	20	0	0	logfile
✔	7EPA	31235	2024-02-17	2021-04-26	3.6	4.08	—	3.9	0.002	0.48	0.0	0.04	11.03	0.00	2.274	5.74	0.00	3.3	96.7	0.0	-1.51	0.60	0.70	1.28	3.8	0.003	0.72	0.0	0.04	14.20	0.00	2.119	13.45	4.66	4.8	95.2	0.0	0.40	1.58	0.64	0.78	1.78	10635	1564	2	0	0	0	0	logfile
✔	7MKM	23899	2024-02-13	2021-04-24	3.16	2.47	—	2.2	0.003	0.79	0.0	0.05	13.04	0.01	2.177	7.69	0.00	2.8	97.2	0.0	-1.30	0.52	0.58	1.72	2.1	0.003	0.76	0.0	0.04	14.77	0.00	2.241	10.90	0.86	5.0	95.0	0.0	-2.17	0.57	0.53	0.61	1.70	3192	406	4	0	1	0	0	logfile
✔	7MKL	23898	2024-02-20	2021-04-24	3.2	2.50	—	2.1	0.004	0.82	0.0	0.06	13.44	0.01	1.862	9.96	0.00	2.8	97.2	0.0	0.37	0.65	0.59	1.10	2.2	0.004	0.76	0.0	0.05	14.29	0.00	2.072	9.75	2.27	5.0	95.0	0.0	-0.60	0.63	0.68	0.65	1.29	25597	3164	23	0	63	0	0	logfile
✔	7MKD	23892	2024-02-22	2021-04-23	3.2	3.75	3.33	3.6	0.010	0.83	9.0	0.05	17.86	0.01	1.653	8.05	6.15	7.2	92.8	0.1	-1.58	0.78	0.83	2.42	3.6	0.004	0.69	1.0	0.04	18.20	0.00	1.820	8.43	4.23	5.7	94.3	0.0	-0.28	1.10	0.74	0.80	1.76	32393	3758	12	136	6	0	0	logfile
✔	7MKJ	23897	2024-02-21	2021-04-23	2.9	3.41	3.07	3.3	0.007	0.67	0.0	0.05	16.51	0.00	2.195	5.49	3.83	5.4	94.6	0.0	-1.98	0.69	0.80	3.35	3.3	0.005	0.61	0.0	0.04	17.40	0.00	2.112	7.32	3.30	5.6	94.4	0.0	-0.62	0.27	0.70	0.83	2.91	32007	3754	12	118	6	0	0	logfile
✔	7oBR	12801	2024-02-25	2021-04-23	2.8	2.88	—	2.9	0.002	0.49	1.0	0.03	23.16	0.00	1.835	8.03	2.55	4.6	95.3	0.0	0.58	0.61	0.80	2.85	2.8	0.006	0.66	2.0	0.04	23.79	0.01	1.862	9.15	4.00	5.6	94.3	0.1	0.16	1.20	0.64	0.86	3.00	146701	7484	60	4019	102	0	0	logfile
✔	7MKF	23871	2024-02-15	2021-04-23	3.0	3.23	—	4.1	0.022	1.99	0.0	0.09	11.33	0.01	2.198	1.23	0.00	7.7	92.3	0.0	-1.78	0.48	0.63	2.98	4.1	0.005	0.81	0.0	0.05	14.71	0.00	1.962	25.00	3.75	8.2	91.8	0.0	-3.09	2.96	0.48	0.66	2.70	11370	730	10	0	0	0	5800	logfile
✔	7MKG	23890	2024-02-15	2021-04-23	3.07	3.13	—	4.0	0.023	1.98	0.0	0.10	10.38	0.01	2.409	0.44	0.00	5.6	94.4	0.0	-1.46	0.47	0.65	2.63	4.1	0.003	0.65	0.0	0.05	13.77	0.00	2.108	16.55	2.97	5.5	94.5	0.0	-2.70	2.00	0.47	0.71	2.43	11370	730	10	0	0	0	5800	logfile
✔	7oBQ	12799	2024-02-16	2021-04-23	3.9	4.22	—	3.9	0.003	0.48	0.0	0.03	17.78	0.00	2.106	9.19	2.63	2.7	97.3	0.0	1.55	0.76	0.79	0.82	3.9	0.003	0.69	0.0	0.04	19.26	0.00	1.991	15.08	2.27	4.0	96.0	0.0	0.37	1.23	0.77	0.81	1.00	16668	1642	11	165	39	0	0	logfile
✔	7MKi	23895	2024-02-21	2021-04-23	3.5	3.43	3.54	3.5	0.008	0.76	0.0	0.05	17.01	0.00	2.170	6.42	5.35	7.1	92.8	0.0	-1.84	0.68	0.80	2.21	3.5	0.003	0.54	0.0	0.04	17.66	0.00	2.126	6.96	3.02	5.4	94.6	0.0	-0.28	0.31	0.69	0.79	1.73	30919	3676	10	96	6	0	0	logfile
✔	7EoS	31229	2024-02-19	2021-04-22	3.9	4.43	—	3.9	0.002	0.42	0.0	0.04	9.75	0.00	2.254	6.49	1.89	4.1	95.8	0.1	0.47	0.88	0.78	1.32	4.0	0.002	0.65	0.0	0.04	12.37	0.00	2.048	12.13	1.93	5.5	94.4	0.1	-0.39	1.68	0.90	0.82	1.19	24600	3106	8	0	18	0	0	logfile
✔	7EoT	31230	2024-02-19	2021-04-22	3.8	4.25	—	4.1	0.003	0.52	2.0	0.04	9.38	0.00	2.074	10.52	2.22	4.2	95.8	0.0	0.02	0.82	0.71	0.77	4.1	0.003	0.67	0.0	0.04	13.60	0.00	2.128	13.90	2.90	5.5	94.5	0.0	-0.71	2.56	0.85	0.78	1.43	24598	3088	8	0	18	0	0	logfile
✔	7EoU	31231	2024-02-19	2021-04-22	4.3	4.50	—	4.2	0.002	0.45	0.0	0.04	9.12	0.00	2.243	9.16	1.92	3.9	96.0	0.1	0.78	0.86	0.73	—	4.2	0.003	0.61	0.0	0.04	11.03	0.00	2.096	15.88	0.00	6.3	93.7	0.1	-0.21	1.63	0.89	0.80	—	24593	3084	8	0	19	0	0	logfile

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