Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7oE0	12856	2024-02-25	2021-04-30	2.69	2.88	2.81	2.8	0.014	1.07	0.0	0.06	24.11	0.01	1.980	24.23	0.00	10.1	89.9	0.0	-2.59	0.77	0.72	2.51	2.8	0.006	0.73	0.0	0.04	23.76	0.01	2.004	17.56	2.64	8.9	91.1	0.0	-1.42	0.38	0.77	0.71	1.84	50296	2208	29	1510	0	530	0	logfile
✔	7oDR	12845	2024-02-13	2021-04-30	2.9	3.11	—	3.0	0.002	0.41	0.0	0.03	16.55	0.02	1.963	4.98	0.44	1.1	98.9	0.0	0.96	0.74	0.80	3.31	3.0	0.003	0.71	1.0	0.04	19.07	0.01	1.903	10.44	2.27	2.2	97.8	0.0	0.74	1.25	0.76	0.84	2.81	107464	9244	68	1489	135	0	0	logfile
✔	7MLU	23910	2024-02-18	2021-04-29	4.1	5.27	—	4.2	0.004	0.88	0.0	0.05	9.81	0.01	2.271	7.00	0.21	6.4	93.6	0.0	-4.41	0.72	0.65	—	4.2	0.003	0.77	0.0	0.04	11.75	0.00	2.146	22.08	0.00	7.2	92.8	0.0	-1.80	1.32	0.75	0.77	—	21886	2746	20	0	5	0	0	logfile
✔	7oDL	12842	2024-02-19	2021-04-29	3.03	2.61	2.99	2.9	0.004	0.61	0.0	0.05	14.66	0.00	2.028	2.79	0.64	5.8	94.1	0.1	-1.28	0.76	0.82	3.77	2.8	0.003	0.55	0.0	0.05	15.44	0.00	2.162	2.94	2.16	5.0	94.9	0.0	-0.71	1.09	0.75	0.84	3.45	24338	3066	6	0	33	0	0	logfile
✔	7oDF	12827	2024-02-13	2021-04-29	2.66	3.20	—	3.1	0.003	0.49	0.0	0.04	19.38	0.00	1.952	6.12	0.00	1.4	98.6	0.0	1.47	0.75	0.83	3.58	3.1	0.003	0.51	0.0	0.04	20.22	0.00	2.019	7.47	2.74	2.3	97.7	0.0	1.86	0.89	0.69	0.80	3.23	6847	703	7	78	2	5	0	logfile
✔	7MLZ	23914	2024-02-13	2021-04-29	3.71	4.27	3.83	3.9	0.004	0.82	0.0	0.05	14.73	0.01	2.150	18.13	0.00	17.4	82.5	0.2	-4.08	0.80	0.62	1.39	3.9	0.003	0.77	0.0	0.05	14.58	0.00	2.104	15.84	1.68	15.6	84.3	0.2	-3.96	0.56	0.81	0.63	0.97	4864	624	4	0	5	0	0	logfile
✔	7MM0	23915	2024-02-20	2021-04-29	3.15	3.84	3.25	3.4	0.004	0.60	0.0	0.05	16.16	0.00	2.191	7.00	0.00	5.5	94.4	0.1	-0.97	0.84	0.83	2.12	3.4	0.003	0.57	0.0	0.04	14.28	0.00	2.203	7.04	0.92	5.6	94.3	0.1	-0.73	0.97	0.84	0.87	2.08	28057	3490	22	0	56	0	0	logfile
✔	7MLV	23911	2024-02-16	2021-04-29	4.1	4.82	—	3.9	0.005	1.02	0.0	0.06	15.50	0.01	2.168	5.10	0.00	7.1	92.9	0.0	-5.14	0.62	0.41	—	3.9	0.014	1.06	0.0	0.05	12.57	0.01	2.049	32.49	0.00	12.3	87.7	0.0	-3.48	1.74	0.71	0.71	—	15055	1919	16	0	22	0	0	logfile
✔	7MLY	23913	2024-02-18	2021-04-29	2.7	3.72	—	3.2	0.004	0.70	0.0	0.05	14.57	0.00	2.040	29.80	0.13	6.7	93.3	0.0	-4.16	0.80	0.84	4.37	3.2	0.004	0.85	0.0	0.05	14.04	0.00	2.089	15.41	2.19	5.9	94.1	0.0	-1.46	0.75	0.80	0.87	3.40	20982	2563	23	0	64	0	0	logfile
✔	7oDE	12826	2024-02-21	2021-04-29	2.84	2.98	2.78	2.9	0.003	0.40	0.0	0.03	22.77	0.01	1.949	3.00	3.32	2.0	98.0	0.0	-0.12	0.82	0.80	3.61	2.9	0.007	0.66	0.0	0.04	22.93	0.01	1.856	6.46	3.53	4.5	95.5	0.0	-0.30	0.54	0.85	0.84	3.32	92524	1761	16	1990	0	0	35996	logfile
✔	7EQ1	31254	2024-02-14	2021-04-28	3.3	2.26	—	2.0	0.003	0.58	0.0	0.04	13.83	0.00	2.113	10.24	0.00	6.5	93.5	0.0	-0.59	0.75	0.74	3.06	2.0	0.003	0.60	0.0	0.04	15.87	0.00	2.104	11.30	2.56	5.8	94.2	0.0	-0.23	0.33	0.76	0.77	2.46	8999	1150	5	0	0	0	0	logfile
✔	7oCY	12816	2024-02-13	2021-04-28	4.25	4.55	4.29	4.4	0.003	0.62	0.0	0.04	12.49	0.00	1.980	9.97	0.00	4.9	95.1	0.0	-0.08	0.73	0.77	—	4.4	0.003	0.66	0.0	0.04	12.51	0.00	2.163	11.82	0.00	3.2	96.8	0.0	1.02	1.86	0.74	0.79	—	7994	1243	3	0	0	0	0	logfile
✔	7oD3	12818	2024-02-19	2021-04-28	2.8	2.59	3.00	2.7	0.004	0.61	0.0	0.05	13.90	0.00	1.953	2.55	0.23	4.8	95.2	0.0	-1.05	0.73	0.81	3.95	2.7	0.004	0.62	0.0	0.05	15.68	0.00	2.189	2.80	1.94	4.0	96.0	0.0	-0.55	0.29	0.75	0.85	3.73	24222	3036	6	0	36	0	0	logfile
✔	7ML1	23905	2024-02-15	2021-04-27	4.0	4.59	—	2.6	0.005	0.66	0.0	0.04	16.74	0.00	1.767	25.40	12.14	8.8	91.1	0.1	-1.89	0.65	0.57	—	2.8	0.002	0.66	0.0	0.04	16.71	0.00	2.057	17.20	3.70	6.7	93.3	0.1	-0.87	0.63	0.85	0.78	—	64538	8076	43	114	142	0	0	logfile
✔	7oCK	12809	2024-02-20	2021-04-27	3.6	5.02	—	8.3	0.008	0.86	0.0	0.05	14.98	0.01	1.988	36.10	0.20	7.7	92.1	0.2	-2.93	0.80	0.41	-0.16	5.6	0.006	1.01	1.0	0.05	17.05	0.01	1.953	42.81	3.20	6.6	93.3	0.1	-1.45	1.41	0.87	0.65	-0.05	28276	3666	12	0	0	0	0	logfile
✔	7ML2	23906	2024-02-15	2021-04-27	3.4	4.68	—	3.4	0.008	1.14	0.0	0.06	15.23	0.01	1.825	40.30	0.09	13.1	86.7	0.2	-4.05	0.53	0.46	0.97	2.8	0.004	0.77	0.0	0.04	16.87	0.00	1.998	24.76	1.99	9.2	90.7	0.1	-1.93	1.29	0.76	0.69	0.80	64550	8082	42	112	140	0	0	logfile
✔	7ML0	23904	2024-02-15	2021-04-27	3.0	3.82	—	2.2	0.018	1.12	0.0	0.06	19.83	0.01	1.912	37.28	20.13	15.6	84.2	0.3	-3.87	0.62	0.63	2.22	2.2	0.004	0.78	0.0	0.04	18.39	0.00	2.059	18.01	4.45	7.9	91.9	0.2	-1.17	1.64	0.84	0.84	2.04	64214	7986	40	132	139	0	0	logfile
✔	7oCH	12807	2024-02-14	2021-04-26	3.14	3.53	3.21	3.2	0.003	0.54	0.0	0.04	15.97	0.00	2.072	3.99	3.80	6.6	93.4	0.0	-2.88	0.89	0.86	2.83	3.2	0.003	0.57	0.0	0.04	16.42	0.00	2.018	4.31	3.61	7.5	92.5	0.0	0.17	0.48	0.90	0.90	2.46	9516	1181	1	0	2	0	0	logfile
✔	7MKQ	23903	2024-02-22	2021-04-26	4.8	4.92	—	4.8	0.004	0.91	1.0	0.05	15.07	0.01	2.010	16.81	1.16	7.0	92.6	0.4	-2.42	0.81	0.79	—	4.8	0.003	0.76	0.0	0.04	14.32	0.00	1.988	19.44	0.03	7.0	92.9	0.1	-0.66	1.00	0.83	0.84	—	32822	4182	7	0	3	0	0	logfile
✔	7oCC	12803	2024-02-15	2021-04-26	3.4	2.93	—	3.3	0.010	0.76	0.0	0.05	19.50	0.00	2.143	5.09	0.39	3.1	96.9	0.0	-1.15	0.73	0.78	4.01	3.2	0.003	0.57	0.0	0.04	14.26	0.00	2.254	4.95	1.64	2.5	97.5	0.0	0.81	1.59	0.75	0.84	4.23	11202	1480	14	0	20	0	0	logfile

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