Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7oF3	12868	2024-02-22	2021-05-04	2.7	3.23	2.69	3.0	0.003	0.50	0.0	0.04	19.05	0.00	1.761	5.69	0.00	3.2	96.8	0.0	1.34	0.88	0.88	3.46	3.0	0.004	0.65	0.0	0.04	19.88	0.00	1.855	10.78	1.96	3.3	96.7	0.0	0.98	1.20	0.88	0.90	3.25	101226	8627	61	1442	63	0	0	logfile
✔	7oF2	12867	2024-02-22	2021-05-04	2.7	3.20	2.66	2.9	0.003	0.54	0.0	0.04	19.12	0.01	1.840	4.36	0.01	3.1	96.9	0.0	1.20	0.89	0.89	3.76	2.9	0.004	0.66	0.0	0.04	20.20	0.00	1.843	10.96	2.09	2.9	97.1	0.0	1.01	0.57	0.88	0.90	3.48	101195	8560	64	1466	91	0	0	logfile
✔	7oF5	12870	2024-02-23	2021-05-04	2.9	3.33	2.91	3.0	0.003	0.53	0.0	0.04	19.07	0.01	1.796	4.95	0.00	3.2	96.8	0.0	1.19	0.85	0.87	3.15	3.1	0.006	0.77	1.0	0.04	20.28	0.01	1.835	14.91	2.71	3.8	96.2	0.0	0.65	0.69	0.86	0.90	2.94	102785	8829	63	1445	75	0	0	logfile
✔	7oF4	12869	2024-02-22	2021-05-04	2.7	3.33	2.71	3.0	0.004	0.55	0.0	0.04	19.42	0.01	1.751	4.97	0.00	3.2	96.8	0.0	1.20	0.90	0.89	3.72	3.0	0.006	0.70	1.0	0.04	20.05	0.01	1.785	11.31	1.77	3.0	97.0	0.0	1.19	0.52	0.90	0.90	3.26	100322	8320	60	1519	95	0	0	logfile
✔	7MoP	23925	2024-02-23	2021-05-03	3.3	3.06	3.23	3.2	0.006	0.80	0.0	0.05	14.72	0.01	2.120	6.14	1.33	2.8	97.2	0.0	-0.65	0.72	0.77	2.37	3.1	0.003	0.56	0.0	0.03	15.94	0.00	2.036	6.01	1.29	2.0	98.0	0.0	2.29	1.84	0.75	0.82	1.90	39049	2452	2	0	0	0	19681	logfile
✔	7oEB	12863	2024-02-15	2021-05-02	3.04	3.38	3.05	3.0	0.004	0.56	0.0	0.04	14.78	0.00	2.121	7.62	0.53	4.0	95.7	0.2	0.94	0.87	0.82	3.00	3.0	0.003	0.52	0.0	0.04	15.86	0.00	2.003	8.09	0.68	3.8	96.2	0.0	1.47	1.78	0.90	0.89	2.91	11682	1434	3	6	3	1	0	logfile
✔	7oEA	12862	2024-02-15	2021-05-02	2.7	3.26	2.79	2.6	0.004	0.77	2.0	0.06	13.35	0.00	2.061	6.12	0.08	4.5	95.3	0.2	0.83	0.90	0.85	3.30	2.7	0.003	0.63	0.0	0.04	14.94	0.00	1.992	7.58	0.38	4.0	95.8	0.1	1.30	0.72	0.92	0.90	2.93	11703	1432	4	7	2	17	0	logfile
✔	7oE3	12860	2024-02-15	2021-05-01	3.35	4.05	3.43	3.4	0.003	0.52	0.0	0.04	15.39	0.00	2.179	5.99	3.39	8.2	91.8	0.0	-2.02	0.92	0.87	2.22	3.4	0.004	0.63	0.0	0.04	16.20	0.00	2.088	8.93	2.95	8.8	91.2	0.0	0.24	0.42	0.93	0.90	1.94	11904	1478	1	0	2	0	0	logfile
✔	7Mo8	23920	2024-02-14	2021-05-01	4.5	3.94	—	3.6	0.008	1.02	0.0	0.05	19.62	0.01	2.070	31.26	0.00	9.8	90.2	0.0	-1.95	0.82	0.75	—	3.6	0.003	0.69	0.0	0.05	15.46	0.00	2.133	20.66	0.00	6.5	93.5	0.0	-1.59	2.29	0.83	0.75	—	9877	1250	3	0	6	0	0	logfile
✔	7MoA	23922	2024-02-15	2021-05-01	4.9	4.75	—	4.0	0.011	1.37	0.0	0.08	22.29	0.01	1.983	27.58	10.24	8.6	91.0	0.5	-1.69	0.83	0.76	—	3.9	0.005	0.86	0.0	0.05	14.38	0.01	2.091	31.75	0.00	8.6	91.4	0.0	-1.93	1.83	0.84	0.80	—	12511	1580	5	0	12	0	0	logfile
✔	7EQG	31265	2024-02-20	2021-05-01	3.2	3.31	—	3.3	0.005	0.83	0.0	0.05	18.85	0.01	1.791	6.67	0.68	7.1	92.8	0.0	-3.71	0.77	0.81	2.89	3.3	0.003	0.61	0.0	0.04	19.79	0.00	2.115	6.87	2.86	6.6	93.4	0.0	-1.31	1.18	0.78	0.84	2.62	26301	3118	17	131	0	0	0	logfile
✔	7Mo9	23921	2024-02-14	2021-05-01	4.0	3.76	—	4.0	0.010	1.23	0.0	0.06	17.88	0.01	1.983	34.57	0.38	9.2	90.8	0.0	-2.30	0.77	0.81	—	4.0	0.004	1.00	1.0	0.05	16.88	0.00	2.179	19.71	3.12	5.6	94.3	0.1	-1.41	1.18	0.77	0.80	—	9755	1247	4	0	6	0	0	logfile
✔	7MoC	23924	2024-02-16	2021-05-01	4.56	3.76	4.47	3.7	0.012	1.82	17.0	0.11	13.17	0.02	2.211	1.99	0.19	1.7	98.3	0.0	-0.04	0.58	0.68	—	3.7	0.004	0.75	0.0	0.04	14.26	0.00	2.112	19.76	0.00	2.4	97.6	0.0	2.08	1.60	0.59	0.71	—	13883	1755	2	0	0	0	0	logfile
✔	7Mo7	23919	2024-02-17	2021-05-01	4.8	4.76	—	4.3	0.004	0.75	0.0	0.05	16.29	0.00	2.126	19.13	0.00	5.2	94.8	0.0	-1.19	0.80	0.74	—	4.3	0.002	0.65	0.0	0.05	13.85	0.00	2.158	17.66	0.00	5.2	94.8	0.0	-1.17	0.53	0.82	0.78	—	18135	2329	5	0	6	0	0	logfile
✔	7oE0	12856	2024-02-25	2021-04-30	2.69	2.88	2.81	2.8	0.014	1.07	0.0	0.06	24.11	0.01	1.980	24.23	0.00	10.1	89.9	0.0	-2.59	0.77	0.72	2.51	2.8	0.006	0.73	0.0	0.04	23.76	0.01	2.004	17.56	2.64	8.9	91.1	0.0	-1.42	0.38	0.77	0.71	1.84	50296	2208	29	1510	0	530	0	logfile
✔	7oDT	12847	2024-02-13	2021-04-30	3.1	3.31	—	3.1	0.003	0.41	0.0	0.03	16.42	0.01	1.988	5.28	0.53	1.2	98.8	0.0	1.05	0.77	0.79	2.84	3.1	0.004	0.62	2.0	0.04	18.59	0.00	1.810	11.55	1.53	2.1	97.8	0.0	0.63	0.69	0.78	0.83	2.50	110473	9585	71	1526	110	0	0	logfile
✔	7MN8	23918	2024-02-15	2021-04-30	3.45	3.96	3.53	3.8	0.012	1.32	0.0	0.07	11.57	0.01	2.340	1.46	0.14	1.8	98.0	0.1	-0.03	0.84	0.83	2.13	3.8	0.003	0.66	0.0	0.05	13.45	0.00	2.177	7.93	1.32	3.7	96.3	0.0	0.30	1.44	0.85	0.84	2.52	12947	1661	10	0	13	0	0	logfile
✔	7MN6	23917	2024-02-14	2021-04-30	3.09	3.68	3.18	3.5	0.013	1.51	0.0	0.08	11.93	0.01	2.392	0.37	0.00	3.5	96.4	0.2	-0.15	0.85	0.85	3.26	3.5	0.003	0.61	0.0	0.04	13.37	0.00	2.261	4.78	0.94	3.9	96.0	0.1	0.04	1.10	0.84	0.86	3.13	9649	1227	8	0	13	0	0	logfile
✔	7oDS	12846	2024-02-13	2021-04-30	3.1	3.32	—	3.1	0.002	0.40	0.0	0.03	16.51	0.02	2.009	5.03	0.51	1.2	98.8	0.0	0.91	0.78	0.76	2.42	3.1	0.006	0.78	0.0	0.04	18.50	0.01	1.746	12.18	2.31	3.3	96.7	0.0	0.26	1.68	0.80	0.80	2.31	108339	9371	67	1487	132	0	0	logfile
✔	7oDR	12845	2024-02-13	2021-04-30	2.9	3.11	—	3.0	0.002	0.41	0.0	0.03	16.55	0.02	1.963	4.98	0.44	1.1	98.9	0.0	0.96	0.74	0.80	3.31	3.0	0.003	0.71	1.0	0.04	19.07	0.01	1.903	10.44	2.27	2.2	97.8	0.0	0.74	1.25	0.76	0.84	2.81	107464	9244	68	1489	135	0	0	logfile

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