Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7MQR	23950	2024-02-16	2021-05-06	4.1	4.43	4.11	4.2	0.007	1.32	0.0	0.07	15.73	0.01	2.382	3.72	0.60	9.7	89.9	0.3	-3.42	0.85	0.80	—	4.2	0.003	0.64	0.0	0.05	13.82	0.00	2.235	10.79	0.00	8.1	91.6	0.2	-1.07	0.46	0.85	0.82	—	14878	1810	12	0	20	0	0	logfile
✔	7oG5	12878	2024-02-16	2021-05-06	3.37	3.57	—	3.6	0.010	0.95	0.0	0.05	14.71	0.01	2.021	19.65	0.00	10.1	89.9	0.0	-1.60	0.63	0.82	2.97	3.6	0.003	0.71	0.0	0.04	16.91	0.00	2.095	15.05	2.09	6.9	93.1	0.0	0.59	0.59	0.59	0.80	1.74	15444	1892	12	0	0	0	0	logfile
✔	7oG6	12879	2024-02-13	2021-05-06	3.3	3.47	—	2.9	0.008	0.82	0.0	0.04	18.38	0.01	2.325	7.36	6.10	9.6	90.4	0.0	-4.47	0.28	0.82	2.77	2.9	0.003	0.62	0.0	0.04	17.37	0.00	2.176	10.24	2.44	6.6	93.4	0.0	-0.62	0.54	0.27	0.84	2.90	1602	199	2	5	0	0	0	logfile
✔	7oGM	12884	2024-02-17	2021-05-06	3.7	3.96	3.87	3.8	0.015	1.84	9.0	0.11	17.32	0.01	2.245	5.94	3.12	3.6	96.3	0.0	-1.16	0.85	0.83	2.45	3.8	0.003	0.65	0.0	0.04	16.62	0.00	2.167	6.32	3.65	3.3	96.7	0.0	0.87	1.27	0.83	0.81	1.87	17683	2454	10	49	0	0	0	logfile
✔	7MQS	23951	2024-02-16	2021-05-06	4.4	4.79	4.46	4.4	0.015	1.73	7.0	0.10	15.00	0.01	2.416	3.33	0.00	9.6	89.8	0.6	-3.94	0.83	0.76	—	4.4	0.004	0.80	0.0	0.05	14.06	0.00	2.087	22.15	0.00	11.5	88.2	0.3	-2.11	0.68	0.84	0.79	—	14028	1739	8	0	0	0	0	logfile
✔	7oGK	12882	2024-02-16	2021-05-06	3.4	4.11	3.60	3.7	0.014	1.75	3.0	0.11	13.82	0.01	2.293	3.59	1.65	4.0	96.0	0.0	-0.55	0.84	0.82	2.48	3.7	0.008	0.72	1.0	0.05	14.42	0.00	2.105	5.27	1.65	3.3	96.7	0.0	0.99	1.16	0.83	0.80	2.31	14731	2085	7	8	0	17	0	logfile
✔	7MQC	23942	2024-02-19	2021-05-05	3.64	3.07	3.58	3.4	0.007	0.81	0.0	0.06	14.36	0.01	2.215	1.31	0.61	0.5	99.5	0.0	1.03	0.71	0.79	3.27	3.4	0.004	0.57	0.0	0.05	15.90	0.00	2.217	4.08	2.26	3.3	96.7	0.0	0.92	0.38	0.74	0.82	3.06	12556	1640	16	16	0	0	0	logfile
✔	7MQi	23948	2024-02-19	2021-05-05	3.21	3.01	3.19	3.2	0.006	0.79	0.0	0.05	13.51	0.00	2.202	2.71	0.59	1.4	98.6	0.0	0.80	0.67	0.81	4.51	3.1	0.003	0.47	0.0	0.04	15.20	0.00	2.285	3.19	1.35	2.6	97.4	0.0	1.40	1.79	0.74	0.86	4.35	12696	1640	16	16	0	0	0	logfile
✔	7oFH	12874	2024-02-20	2021-05-05	2.7	2.70	—	2.7	0.010	1.60	31.0	0.11	15.40	0.01	2.236	13.88	3.90	12.3	87.6	0.1	-4.46	0.71	0.83	1.69	2.7	0.004	0.67	0.0	0.05	16.45	0.00	2.184	5.36	2.63	2.4	97.6	0.0	-0.67	1.31	0.74	0.85	2.57	27135	3465	30	0	30	0	0	logfile
✔	7MQF	23945	2024-02-19	2021-05-05	2.88	2.74	2.86	2.8	0.006	0.72	0.0	0.06	13.21	0.00	2.175	1.01	0.00	0.5	99.5	0.0	1.24	0.72	0.87	6.16	2.7	0.005	0.56	0.0	0.05	14.57	0.00	2.250	2.35	0.00	1.5	98.5	0.0	0.81	0.27	0.77	0.91	5.71	12288	1608	16	16	0	0	0	logfile
✔	7MQD	23943	2024-02-18	2021-05-05	3.25	3.21	3.21	3.3	0.003	0.62	0.0	0.05	14.59	0.00	2.456	1.98	0.00	1.0	99.0	0.0	1.04	0.75	0.83	3.89	3.3	0.002	0.45	0.0	0.04	15.65	0.00	2.277	3.11	0.76	0.1	99.9	0.0	1.82	0.30	0.76	0.86	4.26	11960	1592	16	16	0	0	0	logfile
✔	7MQB	23941	2024-02-19	2021-05-05	3.25	3.29	3.22	3.3	0.007	0.72	0.0	0.05	14.34	0.00	2.302	2.48	0.66	0.5	99.5	0.0	1.28	0.81	0.86	4.28	3.3	0.002	0.47	0.0	0.04	15.22	0.00	2.311	3.59	1.23	2.1	97.9	0.0	1.33	0.37	0.81	0.88	4.62	12760	1640	16	16	0	0	0	logfile
✔	7MQE	23944	2024-02-18	2021-05-05	3.69	3.22	3.67	3.5	0.008	0.84	0.0	0.06	14.66	0.00	2.308	1.58	0.77	1.7	98.3	0.0	0.67	0.75	0.81	3.89	3.5	0.003	0.51	0.0	0.04	15.36	0.00	2.271	2.73	0.77	2.9	97.1	0.0	1.45	0.41	0.79	0.83	3.44	12163	1629	16	16	0	0	0	logfile
✔	7MQG	23946	2024-02-19	2021-05-05	3.25	3.02	3.18	3.1	0.006	0.78	0.0	0.05	13.51	0.00	2.191	2.87	0.00	1.2	98.8	0.0	0.73	0.72	0.82	4.53	3.1	0.005	0.77	0.0	0.05	15.39	0.00	2.064	3.40	0.84	2.7	97.3	0.0	0.61	0.39	0.77	0.86	4.10	12670	1640	16	16	0	0	0	logfile
✔	7MQH	23947	2024-02-19	2021-05-05	3.1	3.00	3.04	3.2	0.007	0.81	0.0	0.06	13.71	0.00	2.350	2.29	0.00	1.0	99.0	0.0	0.95	0.79	0.86	5.69	3.2	0.002	0.46	0.0	0.04	14.65	0.00	2.330	3.50	0.74	2.8	97.2	0.0	0.97	0.34	0.81	0.88	5.93	12736	1640	16	16	0	0	0	logfile
✔	7oF3	12868	2024-02-22	2021-05-04	2.7	3.23	2.69	3.0	0.003	0.50	0.0	0.04	19.05	0.00	1.761	5.69	0.00	3.2	96.8	0.0	1.34	0.88	0.88	3.46	3.0	0.004	0.65	0.0	0.04	19.88	0.00	1.855	10.78	1.96	3.3	96.7	0.0	0.98	1.20	0.88	0.90	3.25	101226	8627	61	1442	63	0	0	logfile
✔	7oF2	12867	2024-02-22	2021-05-04	2.7	3.20	2.66	2.9	0.003	0.54	0.0	0.04	19.12	0.01	1.840	4.36	0.01	3.1	96.9	0.0	1.20	0.89	0.89	3.76	2.9	0.004	0.66	0.0	0.04	20.20	0.00	1.843	10.96	2.09	2.9	97.1	0.0	1.01	0.57	0.88	0.90	3.48	101195	8560	64	1466	91	0	0	logfile
✔	7oF5	12870	2024-02-23	2021-05-04	2.9	3.33	2.91	3.0	0.003	0.53	0.0	0.04	19.07	0.01	1.796	4.95	0.00	3.2	96.8	0.0	1.19	0.85	0.87	3.15	3.1	0.006	0.77	1.0	0.04	20.28	0.01	1.835	14.91	2.71	3.8	96.2	0.0	0.65	0.69	0.86	0.90	2.94	102785	8829	63	1445	75	0	0	logfile
✔	7MPG	23933	2024-02-18	2021-05-04	3.4	3.98	—	4.0	0.003	0.71	0.0	0.06	13.66	0.00	1.908	15.24	0.00	6.1	93.7	0.2	-1.25	0.57	0.67	1.15	3.9	0.004	0.74	0.0	0.04	16.50	0.00	2.095	15.34	3.71	5.5	94.3	0.2	-0.73	0.88	0.59	0.81	1.08	20366	2640	12	0	3	0	0	logfile
✔	7MPE	23932	2024-02-15	2021-05-04	3.2	3.91	—	3.8	0.005	0.69	0.0	0.04	14.10	0.00	2.174	14.62	0.00	6.9	93.1	0.0	-2.52	0.62	0.77	2.09	3.8	0.004	0.90	1.0	0.06	16.08	0.01	1.458	13.99	2.96	5.9	94.1	0.0	-0.77	0.37	0.64	0.79	1.29	11214	1428	1	0	0	0	0	logfile

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