Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7MD2	23763	2024-02-17	2021-04-03	3.1	2.24	3.15	2.2	0.009	0.80	0.0	0.05	14.28	0.00	1.726	3.12	0.25	1.8	98.0	0.2	-1.87	0.73	0.76	3.86	2.9	0.003	0.55	0.0	0.04	16.00	0.00	1.840	5.39	1.61	2.0	97.8	0.2	0.73	1.23	0.74	0.78	3.40	47119	3115	13	0	8	0	23645	logfile
✔	7MCS	23757	2024-02-18	2021-04-02	3.56	3.29	—	3.5	0.006	0.86	1.0	0.05	17.00	0.01	1.994	6.36	0.04	4.3	95.6	0.1	-1.38	0.71	0.78	2.49	3.4	0.005	0.67	0.0	0.04	17.66	0.00	1.831	9.52	2.89	5.0	95.0	0.1	-0.98	1.86	0.72	0.80	2.30	21600	2619	15	30	12	0	0	logfile
✔	7EJU	31163	2024-02-15	2021-04-02	3.5	3.64	—	3.6	0.009	1.29	0.0	0.07	11.94	0.01	2.257	4.79	1.15	17.0	82.8	0.2	-5.48	0.72	0.79	3.13	3.6	0.003	0.72	0.0	0.04	15.23	0.00	2.095	10.08	3.52	12.8	87.2	0.0	-2.38	0.85	0.70	0.78	2.04	13713	1700	4	0	3	0	0	logfile
✔	7EJE	31160	2024-02-13	2021-04-02	3.98	4.18	—	4.0	0.009	1.30	0.0	0.05	15.52	0.00	1.454	41.99	4.44	4.9	92.8	2.3	-2.37	0.58	0.73	1.42	4.0	0.003	0.79	0.0	0.04	18.54	0.00	1.907	15.57	3.36	4.2	94.8	1.0	0.29	4.28	0.63	0.84	1.39	7602	933	8	18	6	0	0	logfile
✔	7EJK	31162	2024-02-14	2021-04-02	3.4	3.65	—	3.5	0.006	0.77	0.0	0.05	13.04	0.00	1.495	12.36	0.43	5.2	94.8	0.0	-0.01	0.70	0.83	2.22	3.5	0.003	0.78	0.0	0.04	15.64	0.00	2.100	10.78	3.21	5.0	95.0	0.0	0.19	1.32	0.71	0.85	1.80	8586	1093	5	0	1	0	0	logfile
✔	7EJC	31158	2024-02-13	2021-04-02	2.97	3.25	—	3.0	0.011	1.18	0.0	0.05	16.42	0.00	1.616	10.93	4.17	5.2	94.4	0.3	-3.39	0.63	0.84	3.61	3.0	0.003	0.64	0.0	0.04	16.41	0.00	1.988	8.16	1.34	4.5	95.5	0.0	-0.12	1.41	0.68	0.92	2.74	7485	930	7	9	9	0	0	logfile
✔	7MCA	23755	2024-02-19	2021-04-01	3.6	3.75	3.58	3.8	0.007	0.98	0.0	0.06	19.39	0.01	1.053	8.11	0.75	8.2	91.7	0.1	-5.13	0.77	0.79	2.32	3.7	0.004	0.82	2.0	0.04	20.07	0.00	1.720	11.11	3.46	7.4	92.6	0.0	-2.21	1.97	0.76	0.81	2.07	24692	2760	13	100	8	0	0	logfile
✔	7EJ2	31149	2024-02-18	2021-04-01	3.3	3.53	—	3.4	0.009	0.94	0.0	0.06	16.55	0.01	2.290	7.49	0.19	4.8	95.1	0.1	-5.99	0.81	0.85	3.23	3.4	0.003	0.64	0.0	0.04	15.88	0.00	2.236	7.42	2.00	2.1	97.9	0.0	-1.24	0.55	0.84	0.87	2.66	20968	2728	12	0	4	0	0	logfile
✔	7EJ0	31147	2024-02-14	2021-04-01	3.2	3.48	—	4.0	0.009	1.12	7.0	0.08	13.82	0.01	1.736	21.36	0.43	6.5	93.5	0.0	-0.98	0.57	0.80	2.10	4.0	0.003	0.69	0.0	0.04	16.46	0.00	2.142	12.11	2.35	5.1	94.9	0.0	-0.54	0.56	0.57	0.82	2.24	8600	1099	5	0	1	0	0	logfile
✔	7EJA	31157	2024-02-14	2021-04-01	3.6	4.27	—	4.1	0.005	0.85	2.0	0.06	13.82	0.00	1.533	17.71	0.11	6.0	94.0	0.0	-0.43	0.70	0.80	1.56	4.1	0.003	0.79	0.0	0.04	15.89	0.00	2.174	17.24	2.90	5.0	94.9	0.1	-0.93	0.67	0.71	0.81	1.08	8584	1097	6	0	1	0	0	logfile
✔	7EJ7	31154	2024-02-13	2021-04-01	3.41	3.67	—	3.5	0.006	0.91	0.0	0.04	18.10	0.00	1.860	43.57	1.75	10.8	88.2	1.0	-4.75	0.57	0.87	3.13	3.5	0.004	0.66	0.0	0.04	18.82	0.00	1.984	12.15	2.01	9.8	89.7	0.5	-0.60	1.15	0.55	0.87	2.56	7773	948	8	18	6	0	0	logfile
✔	7o3D	12704	2024-02-15	2021-04-01	3.71	4.15	3.79	4.0	0.003	0.77	0.0	0.05	13.17	0.01	2.146	6.21	0.00	4.2	95.8	0.0	-0.61	0.76	0.72	1.16	3.9	0.003	0.54	0.0	0.04	15.36	0.00	2.012	8.83	0.94	4.7	95.3	0.0	0.30	0.45	0.76	0.73	1.40	11458	709	1	0	0	0	5694	logfile
✔	7o3H	12706	2024-02-22	2021-04-01	2.6	2.76	—	2.6	0.006	0.88	0.0	0.05	15.26	0.01	2.066	3.69	0.00	2.8	97.2	0.0	-0.68	0.82	0.90	3.55	2.6	0.003	0.62	0.0	0.04	17.14	0.00	2.137	7.46	1.85	2.5	97.5	0.0	1.46	0.41	0.83	0.91	3.46	33700	4161	32	0	24	0	0	logfile
✔	7EJ4	30669	2024-02-21	2021-04-01	3.6	4.33	—	3.9	0.003	0.62	0.0	0.05	13.82	0.00	2.132	10.00	0.00	5.9	94.0	0.1	-1.14	0.84	0.80	1.79	3.9	0.003	0.59	0.0	0.04	14.61	0.00	2.145	10.59	1.27	5.7	94.3	0.1	-0.95	0.35	0.84	0.81	1.53	30040	3725	39	0	75	0	0	logfile
✔	7MBX	23749	2024-02-14	2021-04-01	1.95	2.56	1.94	2.4	0.005	0.88	1.0	0.06	12.16	0.01	2.287	2.16	0.45	1.5	98.5	0.0	-0.11	0.72	0.86	4.55	2.3	0.003	0.57	0.0	0.04	15.04	0.00	2.195	6.07	1.79	1.1	98.9	0.0	1.92	0.50	0.71	0.88	4.55	8433	1065	11	0	2	61	0	logfile
✔	7MBQ	23741	2024-02-21	2021-04-01	2.3	3.00	—	2.6	0.003	0.59	0.0	0.04	14.96	0.01	2.246	6.69	0.58	3.9	96.0	0.1	1.80	0.80	0.88	3.90	2.6	0.002	0.52	0.0	0.04	14.85	0.00	2.214	5.11	1.39	3.0	97.0	0.0	2.81	0.38	0.76	0.91	3.58	30616	3984	12	0	20	16	0	logfile
✔	7MBV	23748	2024-02-21	2021-04-01	2.8	3.34	—	3.0	0.003	0.59	0.0	0.04	12.27	0.01	2.280	6.88	0.00	2.3	97.7	0.0	1.48	0.77	0.82	3.83	3.1	0.007	0.64	0.0	0.04	14.05	0.00	2.247	5.77	1.15	3.8	96.2	0.0	2.29	0.44	0.75	0.91	3.42	30804	3984	8	0	24	0	0	logfile
✔	7MBP	23740	2024-02-21	2021-04-01	2.8	3.41	—	3.1	0.003	0.56	0.0	0.04	12.16	0.00	2.028	7.59	0.30	2.7	97.2	0.1	1.88	0.72	0.83	3.33	3.1	0.002	0.49	0.0	0.04	13.05	0.00	2.235	6.80	0.47	2.5	97.5	0.0	2.42	1.09	0.72	0.85	2.79	30708	3984	8	0	12	0	0	logfile
✔	7EJ6	31153	2024-02-13	2021-04-01	3.21	3.47	—	3.3	0.008	1.03	1.0	0.05	16.92	0.00	2.019	51.68	1.13	12.1	87.2	0.7	-4.78	0.59	0.89	2.78	3.3	0.004	0.68	0.0	0.04	17.47	0.00	2.004	11.58	2.13	7.1	92.3	0.6	-0.95	1.03	0.58	0.89	2.08	7584	948	7	9	6	0	0	logfile
✔	7MC0	23752	2024-02-13	2021-04-01	3.3	3.73	—	3.7	0.012	1.62	8.0	0.10	12.73	0.01	1.925	7.84	1.19	3.9	95.8	0.3	-0.86	0.65	0.81	2.48	3.7	0.003	0.62	0.0	0.04	14.71	0.00	2.242	5.77	1.32	4.0	96.0	0.0	0.88	1.04	0.63	0.81	2.29	7092	931	4	0	0	0	0	logfile

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