Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7M8L	23719	2024-02-17	2021-03-30	3.9	3.46	—	3.4	0.021	1.84	3.0	0.12	12.53	0.01	2.378	1.84	0.15	1.7	97.7	0.7	0.75	0.83	0.83	3.62	3.3	0.003	0.74	0.0	0.05	14.69	0.00	2.151	10.63	3.00	3.0	96.7	0.3	-0.53	1.68	0.81	0.79	2.72	18753	2349	30	0	42	0	0	logfile
✔	7M99	23720	2024-02-17	2021-03-30	3.2	2.95	3.12	3.2	0.014	1.53	0.0	0.10	17.06	0.01	1.823	7.28	0.45	1.8	98.2	0.0	-0.49	0.52	0.69	1.97	3.2	0.005	0.64	0.0	0.04	19.56	0.01	1.858	7.14	1.73	3.5	96.5	0.0	0.58	2.04	0.59	0.83	2.36	17613	2056	17	42	14	0	0	logfile
✔	7M9B	23722	2024-02-19	2021-03-30	3.8	4.47	3.78	4.1	0.003	0.66	3.0	0.04	14.97	0.00	1.382	7.61	0.11	2.6	97.3	0.1	0.14	0.78	0.68	1.04	4.1	0.004	0.87	0.0	0.05	17.87	0.00	2.116	17.01	3.66	2.5	97.3	0.3	1.05	3.23	0.83	0.84	0.81	26139	3084	24	54	10	0	0	logfile
✔	7M9C	23723	2024-02-21	2021-03-30	4.2	4.61	3.85	4.2	0.003	0.64	4.0	0.04	15.01	0.00	1.350	9.42	0.10	2.6	97.3	0.1	0.09	0.78	0.67	—	4.3	0.003	0.77	0.0	0.05	15.38	0.00	2.088	16.72	0.00	3.0	96.9	0.1	0.74	6.10	0.84	0.84	—	30517	3598	26	66	10	0	0	logfile
✔	7EiB	31145	2024-02-13	2021-03-30	3.0	2.24	—	2.0	0.005	0.86	0.0	0.05	12.65	0.01	2.306	3.38	0.27	2.0	98.0	0.0	-0.34	0.74	0.75	3.17	2.0	0.003	0.65	0.0	0.04	15.91	0.00	2.213	9.42	2.15	2.3	97.7	0.0	1.12	1.20	0.75	0.78	2.00	7204	928	5	0	0	0	0	logfile
✔	7o1V	12697	2024-02-22	2021-03-30	4.31	3.92	—	4.2	0.025	2.77	1.0	0.13	21.51	0.02	2.207	10.07	0.07	5.4	94.6	0.1	-1.67	0.59	0.81	—	4.1	0.005	0.73	0.0	0.05	18.10	0.00	1.549	18.62	0.07	5.8	94.2	0.0	-0.34	1.00	0.60	0.83	—	20914	1869	12	0	120	0	0	logfile
✔	7o24	12698	2024-02-14	2021-03-30	4.8	4.54	4.80	4.4	0.003	0.62	0.0	0.04	17.35	0.00	2.084	14.17	1.38	3.2	96.6	0.2	0.00	0.76	0.80	—	4.4	0.003	0.59	0.0	0.04	16.89	0.00	2.152	12.11	0.23	4.2	95.6	0.2	0.02	0.96	0.76	0.80	—	9318	1090	5	46	0	0	0	logfile
✔	7M9A	23721	2024-02-19	2021-03-30	3.9	3.60	3.86	3.9	0.003	0.66	4.0	0.04	15.03	0.00	1.381	7.36	0.11	2.6	97.3	0.1	0.14	0.69	0.65	1.16	3.8	0.004	0.78	1.0	0.04	18.00	0.00	2.061	9.43	3.17	3.0	96.9	0.1	1.34	3.16	0.76	0.76	1.02	26139	3084	24	54	10	0	0	logfile
✔	7o1Q	12696	2024-02-21	2021-03-30	3.4	3.81	—	3.4	0.007	0.55	0.0	0.05	9.97	0.00	2.129	4.28	0.39	2.7	97.3	0.0	-0.21	0.85	0.81	4.50	3.5	0.003	0.52	0.0	0.05	13.14	0.00	2.022	6.19	1.72	3.3	96.7	0.0	0.26	2.16	0.80	0.81	4.25	32434	2051	7	0	0	0	15921	logfile
✔	7o1C	12695	2024-02-26	2021-03-29	2.6	3.02	2.70	2.4	0.018	1.90	0.0	0.06	22.51	0.02	0.055	6.76	0.04	5.1	94.8	0.1	-1.96	0.80	0.83	3.37	2.3	0.004	0.66	0.0	0.04	22.41	0.01	0.933	8.02	2.28	4.1	95.8	0.1	-0.23	1.01	0.81	0.85	2.99	148175	6042	76	4638	489	800	0	logfile
✔	7M8E	23716	2024-02-22	2021-03-29	3.4	3.99	—	3.9	0.010	0.96	0.0	0.05	14.76	0.01	1.923	11.71	0.00	10.6	89.3	0.1	-2.61	0.73	0.84	2.11	3.9	0.003	0.61	0.0	0.04	16.66	0.00	1.948	7.35	1.66	5.6	94.4	0.0	-0.70	0.45	0.77	0.87	1.33	33880	4181	10	49	3	0	0	logfile
✔	7M8J	23717	2024-02-13	2021-03-29	3.48	3.83	3.41	3.7	0.006	0.96	0.0	0.05	14.72	0.00	1.837	12.31	0.00	6.8	93.2	0.0	-0.32	0.69	0.80	2.61	3.7	0.003	0.62	0.0	0.04	15.22	0.00	2.086	6.23	1.29	6.3	93.7	0.0	-0.29	0.43	0.69	0.81	2.88	6915	453	3	0	0	0	3398	logfile
✔	7o19	12693	2024-02-24	2021-03-29	2.9	3.19	2.93	2.6	0.016	1.84	0.0	0.05	22.50	0.02	1.430	6.55	0.04	3.7	96.2	0.1	-1.50	0.82	0.86	3.50	2.6	0.005	0.68	0.0	0.04	22.31	0.01	1.748	7.48	2.47	3.6	96.3	0.1	0.04	0.36	0.85	0.89	3.45	145019	5694	74	4635	173	793	0	logfile
✔	7M7J	23715	2024-02-19	2021-03-28	4.3	5.19	—	4.4	0.005	0.93	1.0	0.06	15.47	0.01	2.117	19.19	5.04	6.4	93.5	0.1	-2.14	0.84	0.71	—	4.4	0.003	0.70	0.0	0.04	13.67	0.00	1.987	25.63	0.00	6.1	93.9	0.0	-1.36	1.25	0.86	0.77	—	23224	3124	6	0	0	0	0	logfile
✔	7M7G	23712	2024-02-20	2021-03-28	4.1	4.36	—	4.2	0.012	1.67	59.0	0.10	19.69	0.01	1.751	14.96	18.86	9.1	90.9	0.0	-4.21	0.69	0.51	—	4.2	0.003	0.76	0.0	0.04	13.46	0.00	2.083	19.78	0.00	6.0	94.0	0.1	-1.44	2.54	0.82	0.76	—	26480	3557	6	0	0	0	0	logfile
✔	7M7E	23710	2024-02-16	2021-03-28	3.2	3.78	—	3.7	0.006	1.09	12.0	0.06	16.73	0.01	2.151	8.15	9.50	3.9	96.1	0.0	-1.47	0.69	0.72	1.63	3.7	0.003	0.56	0.0	0.04	15.00	0.00	2.059	6.21	2.08	3.6	96.4	0.0	0.15	0.70	0.76	0.81	2.09	16677	2230	4	0	0	0	0	logfile
✔	7o0Y	12683	2024-02-15	2021-03-28	3.3	3.83	—	3.5	0.006	1.04	1.0	0.06	14.35	0.01	1.857	4.59	0.41	6.1	93.9	0.0	-5.81	0.76	0.84	2.66	3.5	0.003	0.61	0.0	0.04	15.41	0.00	1.960	10.41	1.63	4.5	95.5	0.0	-0.29	1.13	0.77	0.85	1.52	11651	1514	6	0	1	1	0	logfile
✔	7o10	12685	2024-02-15	2021-03-28	3.6	4.08	—	3.8	0.006	1.09	2.0	0.06	14.56	0.01	1.946	4.80	1.06	7.0	93.0	0.0	-5.64	0.78	0.82	1.71	3.8	0.005	0.72	0.0	0.04	15.83	0.00	1.894	14.53	3.27	6.7	93.3	0.0	-0.44	1.16	0.79	0.83	1.27	11651	1514	6	0	1	1	0	logfile
✔	7o11	12686	2024-02-15	2021-03-28	3.7	4.17	—	3.8	0.006	1.11	1.0	0.06	14.72	0.01	1.960	5.69	0.74	6.1	93.9	0.0	-5.78	0.79	0.82	1.84	3.8	0.003	0.66	0.0	0.04	16.03	0.00	2.027	11.64	2.12	5.1	94.9	0.0	-0.36	0.55	0.79	0.83	1.41	11651	1514	6	0	1	1	0	logfile
✔	7o0Z	12684	2024-02-14	2021-03-28	3.7	4.56	—	4.1	0.007	1.08	0.0	0.06	15.07	0.01	2.319	5.56	0.44	6.4	93.6	0.0	-5.96	0.74	0.79	1.62	4.1	0.003	0.72	0.0	0.04	15.92	0.00	2.164	13.76	3.09	6.0	94.0	0.0	0.00	1.18	0.74	0.80	1.37	8730	1142	4	0	0	0	0	logfile

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