Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7o17	12692	2024-02-15	2021-03-28	4.5	4.66	—	4.2	0.007	1.22	0.0	0.07	16.81	0.01	2.089	10.97	1.09	9.8	90.2	0.0	-5.33	0.78	0.83	—	4.2	0.003	0.74	0.0	0.04	14.54	0.00	1.980	20.49	0.00	6.5	93.5	0.0	-1.87	0.55	0.78	0.83	—	11679	1531	7	0	4	0	0	logfile
✔	7M7H	23713	2024-02-20	2021-03-28	4.1	6.08	—	3.9	0.005	0.88	1.0	0.05	15.13	0.01	2.208	17.62	4.68	5.9	94.1	0.0	-2.36	0.88	0.70	—	3.9	0.003	0.67	0.0	0.04	13.32	0.00	2.146	22.80	0.00	5.3	94.7	0.0	-0.85	1.18	0.90	0.79	—	27046	3637	6	0	0	0	0	logfile
✔	7o0Y	12683	2024-02-15	2021-03-28	3.3	3.83	—	3.5	0.006	1.04	1.0	0.06	14.35	0.01	1.857	4.59	0.41	6.1	93.9	0.0	-5.81	0.76	0.84	2.66	3.5	0.003	0.61	0.0	0.04	15.41	0.00	1.960	10.41	1.63	4.5	95.5	0.0	-0.29	1.13	0.77	0.85	1.52	11651	1514	6	0	1	1	0	logfile
✔	7M7G	23712	2024-02-20	2021-03-28	4.1	4.36	—	4.2	0.012	1.67	59.0	0.10	19.69	0.01	1.751	14.96	18.86	9.1	90.9	0.0	-4.21	0.69	0.51	—	4.2	0.003	0.76	0.0	0.04	13.46	0.00	2.083	19.78	0.00	6.0	94.0	0.1	-1.44	2.54	0.82	0.76	—	26480	3557	6	0	0	0	0	logfile
✔	7M7B	23709	2024-02-13	2021-03-27	2.95	3.73	2.93	3.1	0.012	1.87	5.0	0.11	13.02	0.02	2.512	0.10	0.00	3.5	96.5	0.0	-0.73	0.62	0.86	4.80	3.1	0.003	0.63	0.0	0.04	13.91	0.00	2.203	6.13	0.73	2.5	97.5	0.0	0.24	1.33	0.64	0.89	3.37	4898	635	4	0	2	0	0	logfile
✔	7M6N	23701	2024-02-16	2021-03-26	2.61	3.47	2.67	3.2	0.009	1.28	0.0	0.08	11.87	0.01	2.228	4.91	0.31	1.7	98.3	0.0	0.23	0.86	0.85	3.28	3.2	0.003	0.65	0.0	0.04	14.50	0.00	2.183	8.55	1.18	1.6	98.4	0.0	1.27	0.63	0.83	0.85	3.04	14700	1810	10	0	5	0	0	logfile
✔	7M71	23707	2024-02-13	2021-03-26	2.66	3.67	2.73	3.0	0.013	1.86	5.0	0.11	12.98	0.02	2.531	0.08	0.41	5.0	95.0	0.0	-0.93	0.52	0.79	3.87	3.0	0.002	0.62	0.0	0.04	13.65	0.00	2.177	6.89	0.68	3.1	96.9	0.0	-0.17	1.34	0.59	0.90	3.75	6646	852	6	0	4	0	0	logfile
✔	7M6S	23706	2024-02-16	2021-03-26	3.61	4.62	3.61	3.9	0.008	1.49	0.0	0.09	12.30	0.01	2.269	6.38	0.00	3.1	96.9	0.0	1.92	0.87	0.78	1.08	3.9	0.004	0.83	0.0	0.05	14.85	0.00	2.206	16.72	1.12	3.3	96.7	0.0	0.45	1.41	0.89	0.83	1.03	14625	1790	10	0	5	0	0	logfile
✔	7M74	23708	2024-02-15	2021-03-26	3.93	4.17	—	3.1	0.004	0.74	0.0	0.05	9.73	0.01	1.330	3.92	0.00	3.0	97.0	0.0	-3.25	0.91	0.78	1.54	3.0	0.004	0.69	0.0	0.04	12.68	0.00	2.159	16.15	1.91	3.1	96.9	0.0	-0.36	1.32	0.92	0.84	1.99	13457	1699	10	0	6	0	0	logfile
✔	7M6o	23702	2024-02-16	2021-03-26	2.84	3.65	2.87	3.4	0.009	1.38	0.0	0.09	12.01	0.01	2.171	5.25	0.00	2.8	97.2	0.0	-0.30	0.83	0.83	3.89	3.4	0.003	0.65	0.0	0.04	14.90	0.00	2.225	9.11	1.57	3.0	97.0	0.0	0.55	1.00	0.81	0.84	3.54	14670	1790	10	0	10	0	0	logfile
✔	7M6M	23700	2024-02-16	2021-03-26	3.09	2.99	3.00	3.2	0.008	1.31	0.0	0.08	11.55	0.01	2.383	3.69	0.00	3.7	96.3	0.0	0.33	0.80	0.82	2.77	3.3	0.004	0.89	1.0	0.05	15.35	0.00	2.004	11.87	3.69	2.4	97.6	0.0	0.51	0.71	0.82	0.84	2.41	14190	1720	15	0	15	0	0	logfile
✔	7M6R	23705	2024-02-16	2021-03-26	3.57	3.53	3.53	3.8	0.008	1.20	0.0	0.08	12.25	0.01	2.333	4.44	0.64	3.5	96.5	0.0	-0.05	0.81	0.80	2.23	3.8	0.003	0.79	0.0	0.05	15.15	0.00	2.112	11.54	2.68	4.7	95.3	0.0	0.34	1.40	0.81	0.81	1.98	14300	1755	10	0	5	0	0	logfile
✔	7M69	23691	2024-02-18	2021-03-25	3.42	4.12	4.11	4.1	0.006	0.87	0.0	0.04	13.25	0.01	2.304	0.82	1.29	5.1	94.9	0.0	-0.08	0.52	0.70	1.11	4.1	0.004	0.62	0.0	0.04	15.82	0.00	1.980	12.32	3.60	7.1	92.9	0.0	0.39	1.03	0.53	0.73	1.02	21781	1390	1	0	0	0	10898	logfile
✔	7M6G	23695	2024-02-20	2021-03-25	3.7	4.01	—	3.9	0.009	1.55	5.0	0.10	14.41	0.01	2.208	6.55	0.47	4.6	95.3	0.0	-0.47	0.71	0.72	0.82	3.9	0.003	0.72	0.0	0.05	15.47	0.00	2.083	13.65	3.36	4.6	95.4	0.0	-0.44	1.10	0.73	0.76	1.13	26290	3380	21	0	48	0	0	logfile
✔	7M6E	23693	2024-02-21	2021-03-25	3.3	3.62	—	3.7	0.010	1.37	4.0	0.09	13.08	0.01	2.022	6.21	1.03	4.7	95.2	0.1	-0.48	0.63	0.72	1.45	3.7	0.003	0.69	0.0	0.05	15.08	0.00	2.124	11.73	2.74	4.2	95.8	0.0	-0.32	0.63	0.67	0.79	1.58	29796	3795	14	0	35	0	0	logfile
✔	7M68	23690	2024-02-18	2021-03-25	4.04	4.54	4.34	4.5	0.005	0.75	0.0	0.04	13.49	0.00	2.358	1.05	0.60	5.8	94.2	0.0	-0.08	0.51	0.70	—	4.5	0.003	0.55	0.0	0.04	13.20	0.00	2.084	9.89	0.00	7.7	92.3	0.0	-0.40	1.41	0.52	0.73	—	21806	1390	1	0	0	0	10919	logfile
✔	7M6F	23694	2024-02-19	2021-03-25	3.9	4.35	—	4.1	0.006	1.00	4.0	0.07	11.51	0.01	1.869	10.66	0.00	3.9	96.1	0.0	0.42	0.78	0.76	2.14	4.1	0.003	0.64	0.0	0.05	12.09	0.00	2.115	8.88	1.37	3.4	96.5	0.0	0.52	1.24	0.80	0.83	2.12	24304	3446	25	0	63	0	0	logfile
✔	7M62	23687	2024-02-13	2021-03-25	3.9	3.91	—	4.3	0.007	1.13	0.0	0.07	14.83	0.00	2.321	32.83	0.00	23.3	76.7	0.0	-4.97	0.55	0.62	2.27	4.2	0.003	0.88	0.0	0.05	16.43	0.00	2.174	23.11	7.04	19.0	81.0	0.0	-4.61	2.78	0.57	0.66	2.74	2380	320	10	0	10	0	0	logfile
✔	7M61	23686	2024-02-13	2021-03-25	3.8	3.83	—	4.1	0.005	1.01	0.0	0.08	12.79	0.00	2.218	22.02	0.00	14.3	85.7	0.0	-4.63	0.49	0.73	2.45	4.1	0.004	0.80	0.0	0.05	15.29	0.00	2.095	26.36	7.69	15.2	84.8	0.0	-4.59	0.73	0.49	0.75	2.45	1690	230	10	0	10	0	0	logfile
✔	7M65	23689	2024-02-13	2021-03-25	4.1	4.11	—	4.3	0.009	1.40	0.0	0.10	12.05	0.00	2.392	33.63	0.00	17.6	82.4	0.0	-6.09	0.52	0.73	—	4.2	0.004	0.86	0.0	0.04	11.57	0.00	2.259	19.62	0.00	15.7	84.3	0.0	-6.09	4.55	0.51	0.72	—	2025	275	10	0	5	0	0	logfile

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