Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7M65	23689	2024-02-13	2021-03-25	4.1	4.11	—	4.3	0.009	1.40	0.0	0.10	12.05	0.00	2.392	33.63	0.00	17.6	82.4	0.0	-6.09	0.52	0.73	—	4.2	0.004	0.86	0.0	0.04	11.57	0.00	2.259	19.62	0.00	15.7	84.3	0.0	-6.09	4.55	0.51	0.72	—	2025	275	10	0	5	0	0	logfile
✔	7M6i	23697	2024-02-20	2021-03-25	4.0	4.42	—	4.1	0.007	1.39	10.0	0.08	14.42	0.01	2.162	8.96	0.47	5.9	93.9	0.2	-0.98	0.78	0.76	—	4.1	0.003	0.69	0.0	0.05	15.25	0.00	2.157	14.70	2.63	4.9	95.1	0.0	-0.62	1.23	0.80	0.80	—	27359	3450	15	0	39	0	0	logfile
✔	7M6H	23696	2024-02-20	2021-03-25	4.0	4.24	—	3.9	0.006	1.13	7.0	0.07	13.70	0.01	2.170	14.11	0.27	7.0	92.9	0.1	-2.57	0.76	0.70	—	3.9	0.005	0.86	1.0	0.05	15.35	0.00	1.840	27.46	3.06	8.0	91.9	0.1	-2.05	1.07	0.77	0.74	—	27379	3476	10	0	28	0	0	logfile
✔	7M6E	23693	2024-02-21	2021-03-25	3.3	3.62	—	3.7	0.010	1.37	4.0	0.09	13.08	0.01	2.022	6.21	1.03	4.7	95.2	0.1	-0.48	0.63	0.72	1.45	3.7	0.003	0.69	0.0	0.05	15.08	0.00	2.124	11.73	2.74	4.2	95.8	0.0	-0.32	0.63	0.67	0.79	1.58	29796	3795	14	0	35	0	0	logfile
✔	7EG9	31109	2024-02-20	2021-03-24	3.7	4.62	—	3.7	0.008	1.15	54.0	0.08	16.44	0.01	1.514	21.01	4.37	6.7	92.6	0.7	-3.68	0.58	0.30	0.60	3.6	0.006	0.89	3.0	0.04	17.09	0.01	1.837	19.69	1.92	6.5	93.4	0.1	-0.85	1.38	0.79	0.70	0.71	84318	10176	49	142	11	0	0	logfile
✔	7EGA	31110	2024-02-20	2021-03-24	4.1	4.55	—	4.1	0.008	1.08	35.0	0.07	16.94	0.01	1.445	18.65	3.89	6.5	93.1	0.4	-3.75	0.60	0.28	—	3.9	0.004	0.70	0.0	0.04	15.59	0.00	1.926	14.87	0.00	5.5	94.4	0.1	-0.43	1.37	0.74	0.54	—	85697	10273	49	170	11	0	0	logfile
✔	7EGM	31136	2024-02-17	2021-03-24	3.6	3.90	—	3.7	0.005	0.81	0.0	0.05	15.46	0.01	1.440	6.88	8.61	6.3	93.4	0.3	-3.86	0.81	0.81	1.89	3.7	0.003	0.64	0.0	0.04	16.26	0.00	2.137	8.94	4.06	6.8	93.2	0.0	0.44	0.67	0.81	0.81	1.32	19819	2431	8	0	0	0	0	logfile
✔	7EGB	31111	2024-02-14	2021-03-24	3.3	3.51	—	34.0	0.008	1.11	62.0	0.07	15.49	0.01	1.322	21.13	3.22	7.3	91.9	0.8	-3.64	0.32	0.02	0.13	10.0	0.004	0.83	3.0	0.05	16.74	0.01	1.659	17.27	2.30	6.4	93.5	0.2	-0.97	1.04	0.41	0.18	0.03	113098	13887	63	138	18	0	0	logfile
✔	7EGC	31112	2024-02-14	2021-03-24	3.9	3.72	—	4.9	0.008	1.13	76.0	0.08	15.52	0.01	1.402	24.31	3.39	7.3	91.9	0.8	-3.59	0.43	0.10	0.10	3.1	0.003	0.75	0.0	0.04	16.64	0.00	2.033	14.85	1.87	5.6	94.2	0.2	-0.50	1.16	0.50	0.30	0.41	113129	13879	63	142	18	0	0	logfile
✔	7M5o	23678	2024-02-15	2021-03-24	3.54	2.81	3.58	3.6	0.003	0.54	0.0	0.04	18.45	0.00	1.978	10.65	1.25	0.2	99.8	0.0	-2.03	0.79	0.75	1.08	3.6	0.003	0.59	0.0	0.04	19.38	0.00	2.059	12.79	3.56	4.0	96.0	0.0	0.38	1.23	0.79	0.76	1.43	11648	655	3	37	1	0	5635	logfile
✔	7EGF	31115	2024-02-15	2021-03-24	3.16	3.57	—	3.4	0.008	1.07	5.0	0.08	14.83	0.01	2.209	5.90	2.11	6.4	93.3	0.2	-3.03	0.78	0.77	2.39	3.4	0.005	0.80	0.0	0.05	16.67	0.00	2.092	12.06	3.34	5.6	94.4	0.0	-0.29	0.90	0.73	0.81	1.88	13303	1652	10	0	0	0	0	logfile
✔	7EG4	31105	2024-02-16	2021-03-24	3.2	3.21	—	3.3	0.008	0.70	0.0	0.04	14.25	0.00	1.920	16.93	0.12	12.9	87.1	0.0	-3.12	0.78	0.84	3.02	3.2	0.002	0.55	0.0	0.04	15.89	0.00	2.093	5.93	1.38	8.6	91.4	0.0	0.13	0.50	0.75	0.84	2.38	15258	1878	8	0	8	0	0	logfile
✔	7EGH	31117	2024-02-18	2021-03-24	3.04	3.28	—	3.2	0.009	1.21	16.0	0.09	18.68	0.01	2.206	8.25	5.07	4.3	95.6	0.1	-2.18	0.67	0.63	3.18	3.2	0.004	0.63	0.0	0.04	19.02	0.00	2.086	9.57	3.94	4.0	96.0	0.0	0.44	0.62	0.81	0.86	2.91	20543	2336	8	90	0	0	0	logfile
✔	7EGK	31135	2024-02-14	2021-03-24	2.7	2.79	2.60	2.7	0.008	0.97	0.0	0.05	14.76	0.01	2.240	2.92	8.02	3.2	96.5	0.2	-5.67	0.74	0.87	3.24	2.7	0.003	0.66	0.0	0.04	16.49	0.00	2.223	6.05	1.74	2.6	97.4	0.0	0.85	1.19	0.73	0.88	2.35	9894	1317	12	0	6	0	0	logfile
✔	7EG6	31106	2024-02-15	2021-03-24	3.1	3.55	—	3.2	0.007	0.73	0.0	0.04	27.43	0.01	2.328	1.56	0.00	0.9	99.1	0.0	-1.78	0.88	0.86	3.75	3.2	0.003	0.55	0.0	0.03	27.91	0.00	2.213	5.65	0.63	1.6	98.4	0.0	3.27	0.42	0.89	0.89	2.66	12118	779	11	292	0	0	0	logfile
✔	7NZM	12665	2024-02-14	2021-03-24	3.96	6.56	4.22	4.2	0.007	1.12	0.0	0.06	14.32	0.01	1.774	11.10	0.00	3.8	96.2	0.0	-1.56	0.77	0.51	-0.04	4.3	0.005	1.03	0.0	0.04	15.04	0.00	2.012	21.70	0.52	2.9	97.1	0.0	0.39	1.50	0.95	0.84	0.23	9109	1157	8	0	4	0	0	logfile
✔	7EGG	31116	2024-02-14	2021-03-24	2.77	3.08	—	3.0	0.008	1.13	14.0	0.08	14.57	0.01	2.248	8.16	3.51	3.8	96.1	0.1	-3.25	0.72	0.85	3.29	3.0	0.003	0.63	0.0	0.04	17.57	0.00	2.090	11.31	3.15	4.5	95.5	0.1	0.41	1.35	0.66	0.85	3.09	10062	1259	7	0	0	0	0	logfile
✔	7NYU	12654	2024-02-22	2021-03-23	3.8	3.88	4.17	3.9	0.005	0.86	0.0	0.05	13.98	0.01	2.097	4.70	0.82	3.3	96.7	0.0	-1.67	0.52	0.59	0.84	3.8	0.003	0.80	0.0	0.04	16.82	0.00	2.122	16.51	3.97	3.9	96.1	0.0	0.09	1.84	0.56	0.63	0.71	35228	4618	18	0	11	0	0	logfile
✔	7NYV	12655	2024-02-22	2021-03-23	3.7	3.72	4.17	3.8	0.005	0.85	0.0	0.05	13.96	0.01	1.913	5.75	0.85	3.3	96.7	0.0	-1.68	0.52	0.62	1.11	3.7	0.006	0.87	0.0	0.05	16.78	0.01	2.098	19.27	4.08	5.0	95.0	0.0	-0.59	1.83	0.57	0.67	1.05	35228	4618	18	0	11	0	0	logfile
✔	7M5E	23674	2024-02-20	2021-03-23	2.5	2.97	2.51	2.9	0.018	1.47	3.0	0.11	15.70	0.01	2.433	1.16	0.20	1.8	98.1	0.1	0.59	0.78	0.82	5.49	2.9	0.003	0.62	3.0	0.04	13.71	0.00	2.202	5.39	1.29	1.7	98.3	0.0	0.50	0.53	0.66	0.79	4.44	28566	3477	36	0	135	0	0	logfile

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