Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7NYU	12654	2024-02-22	2021-03-23	3.8	3.88	4.17	3.9	0.005	0.86	0.0	0.05	13.98	0.01	2.097	4.70	0.82	3.3	96.7	0.0	-1.67	0.52	0.59	0.84	3.8	0.003	0.80	0.0	0.04	16.82	0.00	2.122	16.51	3.97	3.9	96.1	0.0	0.09	1.84	0.56	0.63	0.71	35228	4618	18	0	11	0	0	logfile
✔	7NYR	12653	2024-02-22	2021-03-23	3.3	3.49	3.68	3.5	0.005	0.87	0.0	0.05	14.05	0.01	2.160	3.84	0.82	3.4	96.6	0.0	-1.75	0.62	0.69	1.98	3.5	0.005	0.84	0.0	0.05	16.21	0.00	2.033	16.36	3.40	3.8	96.2	0.0	-0.46	1.84	0.65	0.79	1.79	35228	4618	18	0	11	0	0	logfile
✔	7M4W	23668	2024-02-20	2021-03-22	2.55	1.74	—	1.6	0.006	0.55	0.0	0.03	22.94	0.01	1.760	3.08	0.02	2.8	97.0	0.2	1.38	0.77	0.74	3.81	1.5	0.010	1.05	0.0	0.06	23.19	0.01	1.569	5.26	2.56	3.7	96.2	0.2	0.13	0.91	0.80	0.77	3.81	137923	5518	76	4373	195	797	0	logfile
✔	7M4Z	23671	2024-02-20	2021-03-22	2.92	1.87	—	1.6	0.005	0.55	0.0	0.03	22.98	0.02	1.833	4.61	0.00	3.0	96.9	0.2	1.09	0.77	0.72	2.81	2.5	0.004	0.68	0.0	0.04	22.92	0.01	1.748	6.56	2.88	3.6	96.3	0.2	0.60	0.35	0.79	0.76	2.70	138172	5625	70	4373	190	229	0	logfile
✔	7M4Q	23664	2024-02-25	2021-03-22	2.87	2.54	—	2.6	0.011	1.08	3.0	0.06	15.29	0.01	2.198	5.41	2.63	2.4	97.5	0.1	0.60	0.54	0.72	3.10	2.6	0.004	0.58	0.0	0.04	17.10	0.00	1.922	5.93	3.32	2.4	97.6	0.0	1.30	0.60	0.66	0.79	2.97	48572	3142	5	0	8	0	24342	logfile
✔	7NYD	12651	2024-02-23	2021-03-22	3.27	2.40	3.23	1.6	0.013	1.84	5.0	0.10	15.56	0.02	1.536	2.06	0.66	4.8	95.2	0.0	-1.14	0.78	0.80	2.42	2.1	0.003	0.75	0.0	0.04	16.19	0.00	2.053	11.98	3.64	4.6	95.4	0.0	-0.77	0.73	0.71	0.72	1.98	38430	4940	17	0	24	0	0	logfile
✔	7M4Y	23670	2024-02-21	2021-03-22	2.5	1.72	—	1.5	0.006	0.58	2.0	0.03	23.65	0.02	1.783	3.47	2.14	2.5	97.3	0.2	1.41	0.77	0.73	3.74	1.5	0.006	0.85	0.0	0.05	23.37	0.01	1.626	4.89	3.66	3.3	96.6	0.1	0.24	0.31	0.79	0.76	3.88	139817	5511	80	4453	200	1044	0	logfile
✔	7M4R	23665	2024-02-14	2021-03-22	3.65	4.49	—	4.2	0.007	0.83	0.0	0.05	14.71	0.01	2.259	9.04	0.00	14.2	85.6	0.2	-2.94	0.74	0.66	1.90	4.2	0.003	0.67	0.0	0.04	15.54	0.00	2.278	6.36	1.46	8.6	91.4	0.0	-1.26	0.55	0.87	0.84	1.63	5092	639	3	0	0	0	0	logfile
✔	7M4X	23669	2024-02-21	2021-03-22	2.66	1.75	—	1.6	0.006	0.56	0.0	0.03	23.02	0.01	1.789	3.62	0.00	2.5	97.4	0.1	1.32	0.77	0.73	3.46	1.6	0.004	0.70	0.0	0.04	23.06	0.01	1.721	5.38	3.36	3.2	96.6	0.1	0.35	0.35	0.79	0.76	3.42	139446	5528	73	4453	194	552	0	logfile
✔	7M4V	23667	2024-02-20	2021-03-22	2.54	2.36	—	2.4	0.006	0.60	0.0	0.03	23.20	0.02	1.808	2.89	0.00	2.3	97.6	0.2	0.82	0.71	0.79	4.43	2.4	0.007	0.97	0.0	0.05	23.31	0.01	1.620	3.99	2.05	3.0	96.8	0.2	-0.22	1.72	0.74	0.87	4.58	86404	3128	48	2847	162	802	0	logfile
✔	7EFC	31083	2024-02-13	2021-03-21	1.7	1.76	1.76	1.9	0.032	3.16	16.0	0.09	14.88	0.02	0.001	2.15	2.15	2.5	96.6	0.8	-0.84	0.75	0.84	6.42	1.9	0.006	0.87	0.0	0.05	14.55	0.01	1.768	10.33	0.54	3.8	96.2	0.0	0.14	0.88	0.80	0.85	6.64	4004	480	4	0	4	156	0	logfile
✔	5BKF	9403	2024-02-15	2021-03-19	3.6	3.87	—	4.0	0.004	0.54	0.0	0.04	14.14	0.00	2.015	7.17	0.35	6.2	93.8	0.0	-3.64	0.66	0.81	2.57	3.9	0.003	0.67	0.0	0.04	15.72	0.00	2.218	11.72	2.70	3.3	96.7	0.0	-0.20	1.30	0.67	0.83	2.39	13470	1694	10	0	9	0	0	logfile
✔	7NY1	12644	2024-02-23	2021-03-19	3.26	2.43	3.24	2.8	0.006	0.82	0.0	0.04	14.20	0.01	2.268	12.62	0.00	7.9	92.1	0.0	-0.71	0.73	0.74	1.84	2.9	0.003	0.62	0.0	0.04	16.17	0.00	2.036	9.39	2.10	6.1	93.9	0.0	-0.13	1.30	0.74	0.80	1.17	38430	4974	12	0	18	0	0	logfile
✔	5BKG	9404	2024-02-15	2021-03-19	3.8	3.93	—	4.0	0.004	0.58	0.0	0.04	12.91	0.00	2.044	8.32	0.21	6.2	93.8	0.0	-3.60	0.68	0.82	2.85	4.0	0.004	0.70	0.0	0.04	15.73	0.00	2.048	11.34	3.64	4.4	95.6	0.0	-0.52	0.61	0.70	0.85	2.07	13509	1689	10	0	9	0	0	logfile
✔	7EEQ	31080	2024-02-22	2021-03-19	3.96	3.15	—	3.0	0.006	0.98	0.0	0.06	10.42	0.01	2.316	4.10	0.17	12.0	88.0	0.0	-4.80	0.52	0.74	2.63	3.0	0.003	0.66	0.0	0.04	13.70	0.00	2.183	10.34	3.14	9.5	90.5	0.0	-3.03	1.15	0.53	0.76	2.94	34260	4488	24	0	0	0	0	logfile
✔	7EEP	31079	2024-02-16	2021-03-19	3.75	3.62	—	3.7	0.009	1.20	0.0	0.07	11.99	0.01	2.267	3.30	1.19	10.3	89.6	0.1	-6.29	0.63	0.84	2.90	3.7	0.003	0.71	0.0	0.04	16.24	0.00	2.145	7.00	4.39	8.1	91.9	0.0	-3.20	1.21	0.61	0.83	1.92	68076	8532	24	0	0	0	0	logfile
✔	7M3F	23653	2024-02-15	2021-03-18	2.8	2.45	—	2.7	0.008	1.01	0.0	0.06	12.47	0.01	2.245	2.64	0.00	5.0	95.0	0.0	-2.56	0.84	0.86	4.26	2.7	0.003	0.56	0.0	0.04	14.65	0.00	2.130	4.20	1.68	3.6	96.3	0.1	-0.26	0.38	0.84	0.87	3.33	13084	1631	7	0	23	0	0	logfile
✔	7NXD	12637	2024-02-15	2021-03-18	4.6	8.22	6.02	6.0	0.013	1.51	0.0	0.11	14.13	0.03	1.831	64.77	1.03	4.0	96.0	0.1	-1.02	0.80	0.44	—	6.0	0.004	0.83	0.0	0.05	11.29	0.00	1.847	30.46	0.00	7.1	92.9	0.0	-1.26	1.51	0.89	0.73	—	12805	1595	18	0	48	0	0	logfile
✔	7M3G	23654	2024-02-15	2021-03-18	2.5	2.29	—	1.8	0.007	0.96	0.0	0.06	17.28	0.01	2.281	2.21	0.93	3.0	97.0	0.0	-2.02	0.84	0.85	3.70	1.8	0.004	0.62	0.0	0.05	17.15	0.00	2.175	4.04	2.79	3.9	96.1	0.0	-0.22	0.31	0.85	0.87	3.46	13298	1627	11	0	41	0	0	logfile
✔	7M33	23641	2024-02-17	2021-03-18	3.55	3.24	3.49	3.6	0.014	1.14	0.0	0.07	14.89	0.01	2.253	1.22	3.23	5.8	94.2	0.0	-2.02	0.62	0.70	2.41	3.5	0.003	0.53	0.0	0.04	15.71	0.00	2.083	7.33	1.18	4.5	95.5	0.0	0.46	1.30	0.61	0.71	1.53	19575	1237	4	0	4	0	9742	logfile

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