Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7M3G	23654	2024-02-15	2021-03-18	2.5	2.29	—	1.8	0.007	0.96	0.0	0.06	17.28	0.01	2.281	2.21	0.93	3.0	97.0	0.0	-2.02	0.84	0.85	3.70	1.8	0.004	0.62	0.0	0.05	17.15	0.00	2.175	4.04	2.79	3.9	96.1	0.0	-0.22	0.31	0.85	0.87	3.46	13298	1627	11	0	41	0	0	logfile
✔	7NXD	12637	2024-02-15	2021-03-18	4.6	8.22	6.02	6.0	0.013	1.51	0.0	0.11	14.13	0.03	1.831	64.77	1.03	4.0	96.0	0.1	-1.02	0.80	0.44	—	6.0	0.004	0.83	0.0	0.05	11.29	0.00	1.847	30.46	0.00	7.1	92.9	0.0	-1.26	1.51	0.89	0.73	—	12805	1595	18	0	48	0	0	logfile
✔	7M33	23641	2024-02-17	2021-03-18	3.55	3.24	3.49	3.6	0.014	1.14	0.0	0.07	14.89	0.01	2.253	1.22	3.23	5.8	94.2	0.0	-2.02	0.62	0.70	2.41	3.5	0.003	0.53	0.0	0.04	15.71	0.00	2.083	7.33	1.18	4.5	95.5	0.0	0.46	1.30	0.61	0.71	1.53	19575	1237	4	0	4	0	9742	logfile
✔	7EEB	31076	2024-02-25	2021-03-18	2.9	3.13	—	3.1	0.008	1.15	34.0	0.09	17.10	0.01	1.419	23.38	2.98	6.1	93.2	0.7	-0.99	0.65	0.73	2.59	3.1	0.004	0.73	0.0	0.05	15.94	0.00	2.142	8.59	2.50	5.9	93.9	0.2	-0.18	0.72	0.71	0.84	2.88	47874	5975	36	0	95	0	0	logfile
✔	7NWT	12635	2024-02-28	2021-03-17	2.66	2.63	—	2.6	0.011	0.84	0.0	0.05	22.59	0.02	1.145	4.87	2.95	2.6	97.4	0.0	-2.35	0.85	0.88	4.38	2.7	0.002	0.61	0.0	0.03	22.69	0.01	1.153	7.26	3.53	2.8	97.2	0.0	0.16	0.28	0.87	0.88	3.47	149932	6355	74	4641	439	2	0	logfile
✔	7EDX	31075	2024-02-20	2021-03-17	4.5	4.87	—	4.1	0.008	1.09	34.0	0.07	16.72	0.01	1.497	20.97	3.31	6.1	93.4	0.5	-3.70	0.67	0.35	—	3.7	0.003	0.68	0.0	0.04	15.38	0.00	2.106	13.40	0.00	4.9	95.0	0.1	-0.23	0.92	0.78	0.58	—	81790	9837	46	154	10	0	0	logfile
✔	7NWW	12636	2024-02-24	2021-03-17	3.05	3.83	3.02	2.9	0.010	0.97	0.0	0.06	22.83	0.02	1.667	7.33	0.49	3.6	96.3	0.2	-3.85	0.89	0.86	3.17	3.0	0.007	0.76	0.0	0.04	22.94	0.01	1.017	14.96	3.65	4.1	95.9	0.0	-0.19	2.45	0.92	0.91	2.68	145149	5738	67	4651	415	0	0	logfile
✔	7NVV	12614	2024-02-14	2021-03-16	2.9	3.23	2.79	3.1	0.003	0.52	0.0	0.04	17.44	0.00	1.984	3.96	0.00	2.7	97.3	0.0	1.30	0.74	0.80	3.40	3.1	0.004	0.68	0.0	0.04	20.13	0.00	1.932	11.33	2.77	3.3	96.7	0.0	-0.08	0.67	0.72	0.83	3.19	9071	975	9	50	27	0	0	logfile
✔	7NVT	12612	2024-02-24	2021-03-16	2.9	3.03	2.87	2.9	0.003	0.47	0.0	0.04	15.60	0.00	1.979	4.90	0.00	2.8	97.2	0.0	1.40	0.75	0.75	3.26	2.9	0.004	0.65	0.0	0.04	18.25	0.00	2.102	11.68	1.85	3.1	96.8	0.0	0.60	2.20	0.79	0.82	2.78	44114	5249	30	100	11	0	0	logfile
✔	7NVX	12616	2024-02-19	2021-03-16	3.9	3.92	3.77	3.8	0.003	0.49	0.0	0.04	15.66	0.00	1.971	6.61	0.00	4.5	95.5	0.0	0.85	0.70	0.64	1.31	3.8	0.003	0.71	0.0	0.04	17.97	0.00	1.031	15.20	2.21	4.3	95.6	0.0	-0.34	0.92	0.71	0.65	1.06	23663	2796	18	50	35	0	0	logfile
✔	7NVS	12611	2024-02-24	2021-03-16	2.8	2.91	2.75	2.8	0.003	0.46	0.0	0.04	15.53	0.00	1.961	4.43	0.00	2.5	97.5	0.0	1.40	0.72	0.75	3.28	2.8	0.003	0.62	0.0	0.04	18.05	0.00	2.108	10.58	1.59	2.9	97.1	0.0	0.63	0.61	0.77	0.82	2.89	44073	5249	30	98	11	0	0	logfile
✔	7EDH	31071	2024-02-19	2021-03-16	3.6	4.18	—	4.0	0.004	0.67	0.0	0.05	15.72	0.00	2.189	7.03	0.16	6.4	93.3	0.3	-1.26	0.80	0.78	2.26	4.0	0.004	0.62	0.0	0.05	14.63	0.00	2.159	7.62	1.25	7.4	92.2	0.4	-0.95	0.35	0.81	0.79	2.15	23276	2846	36	0	77	0	0	logfile
✔	7EDG	31070	2024-02-19	2021-03-16	3.2	3.75	—	3.7	0.004	0.68	0.0	0.05	14.76	0.00	1.362	6.89	0.45	6.7	92.9	0.4	-1.02	0.79	0.80	2.17	3.7	0.003	0.58	0.0	0.04	14.32	0.00	2.151	6.38	2.05	6.5	93.4	0.1	-0.67	0.30	0.80	0.82	1.84	24715	3023	36	0	79	0	0	logfile
✔	7NVW	12615	2024-02-19	2021-03-16	4.3	4.32	4.26	4.2	0.002	0.45	0.0	0.04	15.51	0.00	1.971	6.64	0.00	4.4	95.6	0.0	0.80	0.71	0.66	—	4.2	0.004	0.71	0.0	0.04	15.86	0.00	2.083	16.29	0.00	5.0	94.9	0.0	-0.73	1.06	0.73	0.69	—	23647	2814	17	42	35	0	0	logfile
✔	7EDJ	31073	2024-02-23	2021-03-16	3.3	3.90	—	3.8	0.006	0.70	0.0	0.05	15.38	0.00	2.085	8.51	0.09	7.9	91.9	0.2	-1.64	0.75	0.72	1.98	3.8	0.002	0.58	0.0	0.04	15.47	0.00	2.160	7.67	1.70	6.4	93.4	0.2	-0.87	0.37	0.78	0.78	1.52	39565	4836	40	0	84	0	0	logfile
✔	7EDi	31072	2024-02-19	2021-03-16	3.3	3.88	—	3.8	0.005	0.70	0.0	0.05	15.14	0.00	2.097	8.05	0.19	6.1	93.4	0.5	-1.02	0.78	0.78	1.89	3.8	0.003	0.60	0.0	0.05	14.51	0.00	2.162	7.66	1.35	5.4	94.1	0.5	-0.60	1.15	0.79	0.79	1.76	24895	3048	37	0	78	0	0	logfile
✔	7EDF	31069	2024-02-19	2021-03-16	3.2	3.77	—	3.7	0.004	0.71	0.0	0.05	16.61	0.00	2.069	6.73	0.26	5.9	93.9	0.2	-0.89	0.78	0.79	2.36	3.7	0.004	0.66	0.0	0.05	14.98	0.00	2.101	6.29	2.32	6.1	93.7	0.2	-0.80	0.38	0.76	0.80	1.94	25090	3065	39	0	82	0	0	logfile
✔	7NVU	12613	2024-02-24	2021-03-16	2.5	2.73	2.50	2.7	0.003	0.45	0.0	0.04	15.45	0.00	1.889	3.87	0.00	2.6	97.4	0.0	1.41	0.78	0.83	3.63	2.7	0.004	0.59	0.0	0.04	17.96	0.00	1.921	9.11	1.86	2.6	97.4	0.0	0.64	0.56	0.75	0.84	3.33	44240	5295	30	90	11	0	0	logfile
✔	7NVM	12606	2024-02-17	2021-03-15	3.1	3.21	3.05	3.2	0.006	0.77	0.0	0.05	16.02	0.01	1.920	9.34	1.50	4.2	95.6	0.1	-2.23	0.65	0.75	3.07	3.2	0.003	0.67	1.0	0.04	16.95	0.00	1.618	10.14	2.31	3.3	96.7	0.0	0.51	0.56	0.75	0.85	2.61	71008	9219	52	0	48	19	0	logfile
✔	7NVN	12607	2024-02-17	2021-03-15	3.0	3.12	2.93	3.1	0.004	0.62	0.0	0.04	14.51	0.00	1.909	8.75	1.66	3.2	96.7	0.1	-2.07	0.64	0.77	2.98	3.1	0.003	0.72	0.0	0.04	16.77	0.00	1.121	10.69	3.38	3.5	96.5	0.0	0.46	0.45	0.74	0.86	3.07	69139	8970	51	0	48	19	0	logfile

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