Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7NVN	12607	2024-02-17	2021-03-15	3.0	3.12	2.93	3.1	0.004	0.62	0.0	0.04	14.51	0.00	1.909	8.75	1.66	3.2	96.7	0.1	-2.07	0.64	0.77	2.98	3.1	0.003	0.72	0.0	0.04	16.77	0.00	1.121	10.69	3.38	3.5	96.5	0.0	0.46	0.45	0.74	0.86	3.07	69139	8970	51	0	48	19	0	logfile
✔	7NVH	12604	2024-02-13	2021-03-15	3.0	3.23	3.00	3.2	0.006	0.73	0.0	0.05	18.54	0.01	2.145	7.79	0.69	5.6	94.4	0.0	-0.42	0.64	0.86	2.63	3.2	0.002	0.58	0.0	0.04	16.00	0.00	2.247	6.64	1.38	4.2	95.8	0.0	0.91	0.33	0.63	0.87	2.46	5528	717	1	0	1	0	0	logfile
✔	7M22	23629	2024-02-13	2021-03-15	3.65	2.59	3.89	2.3	0.004	0.83	0.0	0.05	14.15	0.01	2.168	7.64	0.61	4.1	95.9	0.0	-0.78	0.72	0.73	2.84	2.3	0.005	0.79	0.0	0.05	16.53	0.01	2.101	10.99	5.92	5.3	94.7	0.0	-0.92	1.22	0.72	0.74	2.50	6042	748	6	0	3	0	0	logfile
✔	7NVM	12606	2024-02-17	2021-03-15	3.1	3.21	3.05	3.2	0.006	0.77	0.0	0.05	16.02	0.01	1.920	9.34	1.50	4.2	95.6	0.1	-2.23	0.65	0.75	3.07	3.2	0.003	0.67	1.0	0.04	16.95	0.00	1.618	10.14	2.31	3.3	96.7	0.0	0.51	0.56	0.75	0.85	2.61	71008	9219	52	0	48	19	0	logfile
✔	7M1X	23626	2024-02-15	2021-03-15	3.7	4.26	—	4.1	0.007	0.78	0.0	0.04	29.13	0.01	2.244	6.51	2.27	5.5	94.4	0.1	-1.56	0.83	0.84	1.52	4.1	0.005	0.65	0.0	0.04	28.98	0.00	2.056	15.83	4.05	5.2	94.8	0.0	1.33	1.22	0.84	0.85	1.43	11475	746	10	272	0	0	0	logfile
✔	7M1P	23617	2024-02-15	2021-03-14	3.6	3.93	—	3.9	0.003	0.61	0.0	0.04	15.82	0.00	2.226	8.07	0.00	9.4	90.4	0.2	-0.96	0.68	0.74	1.70	3.8	0.003	0.60	0.0	0.04	14.49	0.00	2.212	8.34	1.34	9.9	90.0	0.1	-0.85	0.32	0.68	0.75	1.05	13511	1938	5	0	13	1	0	logfile
✔	7ECW	31059	2024-02-18	2021-03-13	3.1	3.18	—	3.2	0.007	0.89	1.0	0.06	17.66	0.01	1.950	7.43	1.10	6.1	93.8	0.1	-3.73	0.75	0.82	2.64	3.2	0.002	0.55	0.0	0.04	18.34	0.00	2.219	6.19	2.49	5.3	94.7	0.0	-0.35	1.21	0.75	0.84	2.12	23089	2934	13	70	0	0	0	logfile
✔	7ECV	31058	2024-02-19	2021-03-13	3.43	3.52	—	3.5	0.006	0.86	0.0	0.05	17.83	0.01	1.818	11.10	0.87	7.5	92.4	0.1	-4.11	0.74	0.80	2.31	3.5	0.002	0.59	0.0	0.04	18.34	0.00	2.093	10.00	3.06	6.0	94.0	0.0	-0.84	0.53	0.74	0.80	1.84	24153	3121	12	60	0	0	0	logfile
✔	7M19	23616	2024-02-16	2021-03-12	3.69	3.92	3.50	3.8	0.009	1.03	0.0	0.05	15.74	0.00	2.231	3.83	0.06	3.9	96.1	0.0	-0.78	0.68	0.80	1.98	3.8	0.003	0.58	0.0	0.04	16.11	0.00	2.136	8.68	3.26	4.6	95.4	0.0	0.56	1.21	0.68	0.80	1.46	16039	1878	12	0	19	0	0	logfile
✔	7M17	23614	2024-02-16	2021-03-12	3.65	3.90	3.47	3.8	0.010	1.02	0.0	0.05	15.77	0.00	2.234	3.14	0.00	4.3	95.7	0.0	-1.06	0.68	0.80	1.78	3.8	0.003	0.61	0.0	0.04	15.88	0.00	2.091	7.41	2.75	4.7	95.3	0.0	0.95	1.21	0.68	0.80	1.64	16039	1878	12	0	19	0	0	logfile
✔	7M0R	23613	2024-02-21	2021-03-11	3.7	4.13	—	3.3	0.004	0.71	0.0	0.05	12.84	0.00	2.056	16.98	1.04	4.4	95.6	0.0	-2.49	0.84	0.82	1.82	3.3	0.003	0.62	0.0	0.04	14.40	0.00	2.164	14.14	2.91	4.0	96.0	0.0	-1.16	1.20	0.84	0.83	1.63	30898	4228	8	0	134	0	0	logfile
✔	7M0J	23612	2024-02-18	2021-03-11	3.52	3.78	—	3.7	0.013	1.87	1.0	0.10	13.97	0.01	2.528	0.15	1.68	7.4	92.2	0.5	-2.03	0.77	0.78	2.38	3.7	0.004	0.65	0.0	0.04	15.17	0.00	2.132	8.46	2.15	4.0	96.0	0.0	-0.01	1.31	0.78	0.80	2.21	22827	2916	3	0	0	0	0	logfile
✔	7NTM	12591	2024-02-14	2021-03-10	2.86	3.19	2.97	2.8	0.013	1.61	7.0	0.10	15.61	0.00	1.962	17.08	1.77	6.2	93.8	0.0	-3.56	0.98	0.97	4.63	2.8	0.004	0.56	0.0	0.04	15.92	0.00	2.064	3.45	0.75	2.5	97.5	0.0	-0.02	0.92	0.99	0.98	5.26	10336	1388	8	0	8	0	0	logfile
✔	7LZJ	23608	2024-02-16	2021-03-10	2.7	2.76	2.62	2.8	0.004	0.66	3.0	0.05	11.18	0.00	1.725	5.95	0.17	4.4	95.6	0.0	-3.14	0.75	0.88	5.01	2.8	0.005	0.63	0.0	0.05	14.29	0.00	2.039	4.16	0.88	5.2	94.8	0.0	-1.73	1.00	0.75	0.91	5.16	16590	2148	3	0	0	0	0	logfile
✔	7NTC	12587	2024-02-21	2021-03-09	3.6	4.35	3.76	4.1	0.005	0.65	0.0	0.05	15.09	0.00	2.165	7.60	0.00	6.7	93.2	0.1	-0.97	0.84	0.83	1.67	4.1	0.002	0.54	0.0	0.04	14.94	0.00	2.149	6.87	1.05	5.8	94.1	0.1	-0.68	0.32	0.84	0.83	1.46	30005	3698	33	0	81	0	0	logfile
✔	7EBF	31053	2024-02-15	2021-03-09	2.63	2.31	—	2.5	0.002	0.42	0.0	0.04	11.01	0.00	2.294	5.76	2.11	2.0	98.0	0.0	1.61	0.65	0.78	2.64	2.3	0.005	0.60	0.0	0.04	15.95	0.00	2.240	9.84	4.14	3.1	96.9	0.0	0.77	0.54	0.67	0.81	3.23	13052	1640	4	0	0	0	0	logfile
✔	7LZE	23605	2024-02-13	2021-03-09	3.23	3.26	3.28	3.6	0.003	0.45	0.0	0.04	13.96	0.00	2.222	3.40	0.11	8.4	91.6	0.0	-0.70	0.76	0.82	3.47	3.5	0.004	0.57	0.0	0.04	14.96	0.00	2.256	3.53	1.95	6.9	93.1	0.0	-0.91	1.12	0.77	0.85	2.78	7842	1011	9	0	9	0	0	logfile
✔	7LZH	23606	2024-02-19	2021-03-09	3.57	4.21	—	4.1	0.009	1.04	1.0	0.15	14.01	0.01	2.231	4.39	0.67	7.5	92.5	0.0	-5.49	0.77	0.81	2.43	4.1	0.004	0.64	0.0	0.05	13.84	0.00	2.168	9.00	2.18	5.8	94.2	0.0	-1.37	0.72	0.77	0.81	1.86	25306	3176	16	0	28	0	0	logfile
✔	7LZi	23607	2024-02-15	2021-03-09	4.39	3.64	—	3.5	0.005	0.94	0.0	0.06	13.06	0.01	2.234	4.41	0.32	5.5	94.5	0.0	-4.68	0.74	0.74	—	3.5	0.003	0.70	0.0	0.05	12.91	0.00	2.129	14.08	0.00	5.2	94.8	0.0	-0.78	2.29	0.75	0.76	—	11782	1484	12	0	8	0	0	logfile
✔	7NTA	12586	2024-02-20	2021-03-09	3.5	3.71	3.63	3.6	0.005	0.69	0.0	0.06	15.19	0.00	2.050	7.05	0.00	4.1	95.9	0.0	-1.38	0.80	0.81	2.51	3.6	0.005	0.69	0.0	0.05	14.52	0.00	1.977	6.73	1.37	6.0	94.0	0.0	-1.19	0.37	0.80	0.82	2.46	26805	3261	34	0	80	89	0	logfile

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