Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7NTC	12587	2024-02-21	2021-03-09	3.6	4.35	3.76	4.1	0.005	0.65	0.0	0.05	15.09	0.00	2.165	7.60	0.00	6.7	93.2	0.1	-0.97	0.84	0.83	1.67	4.1	0.002	0.54	0.0	0.04	14.94	0.00	2.149	6.87	1.05	5.8	94.1	0.1	-0.68	0.32	0.84	0.83	1.46	30005	3698	33	0	81	0	0	logfile
✔	7LZE	23605	2024-02-13	2021-03-09	3.23	3.26	3.28	3.6	0.003	0.45	0.0	0.04	13.96	0.00	2.222	3.40	0.11	8.4	91.6	0.0	-0.70	0.76	0.82	3.47	3.5	0.004	0.57	0.0	0.04	14.96	0.00	2.256	3.53	1.95	6.9	93.1	0.0	-0.91	1.12	0.77	0.85	2.78	7842	1011	9	0	9	0	0	logfile
✔	7LZi	23607	2024-02-15	2021-03-09	4.39	3.64	—	3.5	0.005	0.94	0.0	0.06	13.06	0.01	2.234	4.41	0.32	5.5	94.5	0.0	-4.68	0.74	0.74	—	3.5	0.003	0.70	0.0	0.05	12.91	0.00	2.129	14.08	0.00	5.2	94.8	0.0	-0.78	2.29	0.75	0.76	—	11782	1484	12	0	8	0	0	logfile
✔	7NSU	12577	2024-02-23	2021-03-08	4.7	3.48	4.74	4.1	0.003	0.70	0.0	0.05	14.51	0.00	1.833	11.03	3.66	4.9	95.0	0.1	-1.84	0.58	0.49	—	2.4	0.003	0.66	0.0	0.05	12.88	0.00	1.674	14.98	0.16	4.1	95.9	0.0	-0.91	2.57	0.60	0.53	—	36070	2410	6	0	0	0	17527	logfile
✔	7NSQ	12575	2024-02-24	2021-03-08	3.1	3.25	3.17	3.2	0.007	0.99	0.0	0.06	23.63	0.01	1.417	4.35	0.52	6.8	92.9	0.3	-3.65	0.82	0.85	2.43	3.2	0.004	0.64	0.0	0.04	23.41	0.00	2.052	10.28	6.57	7.5	92.3	0.2	-1.04	0.39	0.80	0.86	2.03	146158	5690	57	4733	1	0	0	logfile
✔	7NSP	12574	2024-02-24	2021-03-08	3.5	3.66	3.65	3.6	0.008	1.05	2.0	0.08	23.83	0.01	1.432	5.64	0.95	8.1	91.6	0.3	-4.02	0.83	0.82	1.76	3.6	0.004	0.69	0.0	0.04	23.59	0.00	1.999	13.21	5.11	8.8	91.1	0.1	-1.55	0.45	0.83	0.82	1.26	146148	5691	57	4733	1	0	0	logfile
✔	7NSo	12573	2024-02-23	2021-03-08	2.9	3.04	2.97	3.0	0.008	0.99	0.0	0.08	23.59	0.01	1.444	4.46	0.67	7.1	92.6	0.3	-3.62	0.81	0.83	2.59	3.0	0.007	0.76	0.0	0.05	23.52	0.01	1.974	10.40	5.95	7.9	91.9	0.1	-1.41	0.36	0.83	0.87	2.26	144454	5691	56	4653	1	0	0	logfile
✔	7LYS	23600	2024-02-16	2021-03-08	3.05	2.55	3.08	3.1	0.003	0.54	0.0	0.04	20.02	0.00	1.976	5.82	0.17	0.0	100.0	0.0	-1.46	0.83	0.83	2.05	3.1	0.003	0.54	0.0	0.04	20.39	0.00	2.003	6.34	1.05	3.8	96.2	0.0	1.22	0.34	0.83	0.84	2.13	13573	669	4	89	0	0	6374	logfile
✔	7EB4	31051	2024-02-19	2021-03-08	3.5	4.17	—	4.0	0.004	0.62	0.0	0.05	14.12	0.00	2.156	7.05	0.04	4.9	95.1	0.1	-0.84	0.81	0.79	1.94	4.0	0.007	0.75	0.0	0.05	14.67	0.00	2.169	10.56	1.80	8.6	91.4	0.0	-1.27	1.16	0.80	0.78	1.84	24832	3047	35	0	75	0	0	logfile
✔	7EAZ	31047	2024-02-19	2021-03-08	3.5	4.16	—	4.0	0.004	0.67	0.0	0.05	15.47	0.00	2.146	8.23	0.00	5.3	94.7	0.0	-1.15	0.79	0.77	2.17	4.0	0.003	0.63	0.0	0.05	14.72	0.00	2.144	8.21	1.46	5.4	94.6	0.0	-0.80	0.29	0.81	0.79	1.99	24956	3051	38	0	82	0	0	logfile
✔	7EB3	31050	2024-02-19	2021-03-08	3.6	4.26	—	4.0	0.005	0.66	0.0	0.05	14.91	0.00	2.071	7.88	0.04	6.3	93.6	0.1	-1.11	0.83	0.81	2.19	4.0	0.002	0.59	0.0	0.04	14.45	0.00	2.120	7.27	1.51	5.0	94.9	0.1	-0.72	1.59	0.83	0.80	1.90	24844	3041	36	0	79	0	0	logfile
✔	7EB0	31048	2024-02-19	2021-03-08	3.6	4.22	—	4.0	0.004	0.66	0.0	0.05	15.82	0.00	2.188	7.18	0.00	5.9	94.1	0.0	-1.14	0.81	0.79	2.19	4.0	0.004	0.62	0.0	0.05	14.84	0.00	2.187	8.42	1.91	6.5	93.5	0.0	-1.18	1.15	0.82	0.80	1.74	24946	3055	35	0	80	0	0	logfile
✔	7NSL	12570	2024-02-14	2021-03-08	3.1	3.25	2.92	3.2	0.012	1.84	0.0	0.08	14.48	0.01	2.367	4.69	0.00	3.7	96.3	0.0	-5.51	0.54	0.77	3.94	3.2	0.006	0.70	0.0	0.04	17.65	0.00	2.121	7.46	4.11	8.3	91.7	0.0	-4.17	0.95	0.55	0.81	2.94	8323	595	7	0	0	0	4053	logfile
✔	7NST	12576	2024-02-19	2021-03-08	3.7	2.58	3.69	3.4	0.003	0.65	0.0	0.04	13.58	0.00	2.022	10.96	0.98	3.3	96.6	0.1	-1.72	0.67	0.69	2.83	3.1	0.003	0.61	0.0	0.04	15.36	0.00	1.932	14.26	2.86	3.6	96.4	0.0	-0.54	1.68	0.66	0.70	3.42	23528	1703	5	0	0	0	10582	logfile
✔	7EB5	31052	2024-02-19	2021-03-08	3.4	4.18	—	4.0	0.004	0.64	0.0	0.05	15.01	0.00	2.162	7.58	0.11	5.5	94.4	0.1	-1.06	0.79	0.77	1.94	4.0	0.003	0.60	0.0	0.05	14.78	0.00	2.139	7.96	1.69	6.0	93.9	0.1	-0.84	1.15	0.80	0.80	1.78	24902	3058	33	0	74	0	0	logfile
✔	7LYT	23601	2024-02-16	2021-03-08	2.9	2.52	2.91	3.0	0.009	0.55	0.0	0.04	20.71	0.03	2.087	7.16	0.33	0.0	100.0	0.0	-1.59	0.82	0.80	2.24	3.0	0.005	0.87	0.0	0.04	21.54	0.00	1.211	9.74	1.98	5.9	94.1	0.0	-0.37	1.22	0.83	0.82	2.86	14354	712	5	92	6	0	6722	logfile
✔	7NSH	12567	2024-02-14	2021-03-07	3.2	3.39	3.12	3.3	0.003	0.54	0.0	0.05	19.44	0.00	1.187	7.76	0.02	4.2	95.8	0.1	0.71	0.80	0.84	2.70	3.3	0.009	0.75	0.0	0.05	20.18	0.01	0.874	8.89	2.29	5.4	94.6	0.0	0.37	1.22	0.80	0.90	2.66	112448	9643	79	1611	229	2	0	logfile
✔	7LYQ	23599	2024-02-19	2021-03-07	3.34	3.59	—	3.6	0.013	1.74	1.0	0.10	12.67	0.01	2.521	0.30	0.43	5.2	94.3	0.4	-0.83	0.77	0.83	3.22	3.5	0.004	0.60	0.0	0.04	14.07	0.00	2.201	4.78	2.08	3.3	96.7	0.0	0.51	1.24	0.79	0.86	2.61	23641	2985	6	0	38	0	0	logfile
✔	7LYP	23598	2024-02-19	2021-03-07	4.05	4.38	—	4.1	0.013	1.73	0.0	0.09	12.97	0.01	2.509	0.28	0.71	6.7	92.7	0.6	-1.22	0.82	0.81	—	4.1	0.004	0.65	0.0	0.04	12.58	0.00	2.037	10.76	0.00	5.5	94.5	0.0	0.00	0.67	0.83	0.82	—	23504	2985	6	0	28	0	0	logfile
✔	7LYo	23597	2024-02-19	2021-03-07	3.32	3.53	—	3.5	0.013	1.75	5.0	0.09	12.47	0.01	2.511	0.09	0.43	5.4	94.3	0.3	-0.89	0.78	0.83	3.84	3.5	0.005	0.65	0.0	0.05	14.24	0.00	2.167	6.65	2.00	4.1	95.8	0.1	0.31	0.65	0.82	0.87	2.97	23649	2982	6	0	40	0	0	logfile

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