Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7NSH	12567	2024-02-14	2021-03-07	3.2	3.39	3.12	3.3	0.003	0.54	0.0	0.05	19.44	0.00	1.187	7.76	0.02	4.2	95.8	0.1	0.71	0.80	0.84	2.70	3.3	0.009	0.75	0.0	0.05	20.18	0.01	0.874	8.89	2.29	5.4	94.6	0.0	0.37	1.22	0.80	0.90	2.66	112448	9643	79	1611	229	2	0	logfile
✔	7LYK	23593	2024-02-19	2021-03-07	3.65	3.91	—	3.8	0.013	1.73	4.0	0.09	12.84	0.01	2.493	0.13	0.35	6.0	93.7	0.3	-0.98	0.81	0.82	2.68	3.8	0.004	0.61	0.0	0.04	14.11	0.00	2.158	5.97	1.53	3.9	96.1	0.0	0.35	0.57	0.81	0.83	2.05	23444	2983	6	0	25	0	0	logfile
✔	7LYM	23595	2024-02-19	2021-03-07	3.57	3.82	—	3.7	0.013	1.73	2.0	0.10	12.92	0.01	2.536	0.04	0.84	5.3	94.4	0.4	-1.08	0.80	0.83	2.78	3.7	0.005	0.65	0.0	0.05	14.28	0.00	2.112	6.11	1.76	4.0	96.0	0.0	0.19	0.64	0.81	0.83	2.39	23916	3006	6	0	33	0	0	logfile
✔	7LYL	23594	2024-02-19	2021-03-07	3.72	4.02	—	3.8	0.013	1.70	2.0	0.09	13.01	0.01	2.538	0.17	0.69	5.7	94.2	0.1	-1.00	0.81	0.83	2.52	3.8	0.003	0.62	0.0	0.04	14.13	0.00	2.166	6.50	1.38	3.7	96.3	0.0	0.48	0.59	0.82	0.84	2.00	23826	3003	6	0	28	0	0	logfile
✔	7EA5	31039	2024-02-15	2021-03-06	3.3	3.36	—	3.3	0.004	0.68	0.0	0.04	24.99	0.01	2.319	2.08	0.00	2.0	98.0	0.0	-3.00	0.74	0.79	2.50	3.3	0.005	0.63	0.0	0.04	26.59	0.00	2.130	6.63	2.42	3.7	96.3	0.0	0.48	1.68	0.77	0.84	2.51	13770	975	11	290	4	0	0	logfile
✔	7EA8	31040	2024-02-17	2021-03-06	3.1	3.23	—	3.2	0.004	0.71	0.0	0.04	24.06	0.01	2.306	1.86	0.00	3.7	96.3	0.0	-3.23	0.69	0.78	2.67	3.2	0.006	0.63	0.0	0.04	25.83	0.00	2.177	5.03	1.57	6.0	94.0	0.0	-0.17	0.61	0.75	0.86	2.19	12865	984	12	244	4	0	0	logfile
✔	7LYB	23591	2024-02-18	2021-03-06	3.28	3.92	3.31	3.6	0.006	0.73	0.0	0.04	26.07	0.00	1.330	8.91	0.00	4.7	95.3	0.0	-1.02	0.88	0.86	1.97	3.6	0.003	0.64	0.0	0.04	26.09	0.00	2.116	10.10	1.81	3.5	96.5	0.0	1.91	1.19	0.87	0.87	1.19	14699	1096	15	293	4	0	0	logfile
✔	7LYC	23592	2024-02-18	2021-03-06	2.94	3.08	2.92	3.1	0.006	0.65	0.0	0.04	25.82	0.00	1.314	6.99	0.10	2.2	97.8	0.0	-0.02	0.73	0.82	3.48	3.1	0.003	0.56	0.0	0.04	26.23	0.00	2.183	7.65	1.57	2.7	97.3	0.0	1.65	0.27	0.72	0.81	3.11	15475	1188	12	293	0	0	0	logfile
✔	7LY9	23589	2024-02-18	2021-03-06	3.91	4.69	3.95	4.1	0.005	0.72	3.0	0.05	15.51	0.00	2.003	4.11	0.76	5.8	94.2	0.0	-0.23	0.76	0.75	1.10	4.1	0.003	0.62	0.0	0.04	14.48	0.00	2.193	10.20	1.71	5.7	94.2	0.0	-0.51	0.69	0.82	0.85	1.44	21464	2538	35	0	96	0	0	logfile
✔	7LXX	23578	2024-02-13	2021-03-05	3.0	2.96	3.03	3.2	0.012	1.19	0.0	0.06	9.98	0.01	2.519	0.57	0.00	3.6	96.4	0.0	0.69	0.75	0.78	4.22	3.2	0.003	0.66	0.0	0.04	13.95	0.00	2.191	9.07	2.81	3.3	96.7	0.0	-0.48	1.60	0.77	0.82	4.40	2740	352	5	0	4	0	0	logfile
✔	7NSC	12564	2024-02-14	2021-03-05	3.3	3.46	3.32	3.4	0.005	0.71	0.0	0.04	14.50	0.00	1.732	9.65	0.10	8.3	91.7	0.0	-1.46	0.77	0.81	2.53	3.5	0.002	0.55	0.0	0.04	16.20	0.00	2.155	8.02	2.08	5.6	94.4	0.0	-0.16	0.90	0.76	0.81	1.32	9327	1230	4	0	0	0	0	logfile
✔	7NSB	12563	2024-02-15	2021-03-05	3.7	3.60	3.62	3.7	0.004	0.70	0.0	0.05	13.75	0.00	2.214	8.33	0.00	11.5	88.5	0.0	-2.03	0.73	0.82	2.57	3.7	0.003	0.62	0.0	0.04	15.33	0.00	2.084	8.26	2.51	11.4	88.6	0.0	-1.06	0.28	0.73	0.82	1.82	13474	1775	4	0	0	0	0	logfile
✔	7NSG	12566	2024-02-14	2021-03-05	3.34	3.46	3.26	3.4	0.009	1.01	0.0	0.05	14.07	0.01	2.307	2.71	0.00	3.1	96.9	0.0	-3.82	0.65	0.84	2.86	3.4	0.002	0.53	0.0	0.04	14.03	0.00	2.171	5.76	0.85	1.7	98.3	0.0	1.79	1.59	0.62	0.84	1.88	10356	1290	6	0	24	0	0	logfile
✔	7LXU	23575	2024-02-25	2021-03-05	3.1	3.45	3.19	3.4	0.006	0.70	0.0	0.05	14.76	0.00	2.067	14.32	0.46	7.8	92.2	0.0	-1.68	0.78	0.83	2.63	3.3	0.002	0.58	0.0	0.04	16.19	0.00	2.128	13.13	2.36	6.7	93.3	0.0	-0.63	0.40	0.79	0.84	2.31	50778	6364	30	0	2	0	0	logfile
✔	7LY0	23581	2024-02-13	2021-03-05	2.6	2.57	2.63	2.7	0.012	1.19	0.0	0.08	9.44	0.01	2.515	0.55	0.36	1.2	98.8	0.0	1.70	0.61	0.70	5.23	2.7	0.003	0.62	0.0	0.04	14.63	0.00	2.156	8.84	2.50	1.5	98.5	0.0	0.79	1.61	0.69	0.76	4.35	2805	354	5	0	6	0	0	logfile
✔	7NS3	12559	2024-02-16	2021-03-05	3.5	3.47	3.37	3.4	0.004	0.58	0.0	0.04	14.32	0.00	2.079	6.57	0.00	6.4	93.6	0.0	0.19	0.83	0.86	2.56	3.4	0.002	0.49	0.0	0.04	15.47	0.00	2.178	5.06	1.05	4.6	95.3	0.1	0.97	0.22	0.83	0.86	2.05	14445	1849	6	0	0	0	0	logfile
✔	7LXV	23576	2024-02-25	2021-03-05	3.4	3.70	3.40	3.6	0.006	0.90	0.0	0.06	13.84	0.01	1.900	9.02	0.12	1.9	97.8	0.3	0.23	0.69	0.81	2.90	3.6	0.004	0.61	0.0	0.04	15.68	0.00	2.077	8.49	2.14	2.6	97.4	0.0	1.26	0.42	0.67	0.81	2.44	48314	6204	30	0	2	0	0	logfile
✔	7NS4	12560	2024-02-13	2021-03-05	3.9	3.81	3.79	3.8	0.006	0.79	0.0	0.05	14.40	0.00	2.116	9.17	0.00	10.8	89.2	0.0	-1.02	0.75	0.84	2.90	3.8	0.003	0.61	0.0	0.04	16.07	0.00	2.197	7.96	3.06	8.9	91.1	0.0	0.42	0.31	0.74	0.83	2.13	5465	698	4	0	2	0	0	logfile
✔	7NS6	12561	2024-02-15	2021-03-05	3.18	4.09	—	3.2	0.004	0.85	25.0	0.06	13.44	0.00	2.006	12.56	0.00	2.3	97.6	0.1	0.71	0.87	0.81	1.73	3.2	0.003	0.59	0.0	0.04	14.46	0.00	2.103	11.83	1.80	3.4	96.6	0.0	0.13	1.53	0.89	0.87	2.10	55899	7109	20	0	52	0	0	logfile
✔	7LY4	23587	2024-02-15	2021-03-05	3.8	4.17	3.83	3.9	0.019	1.73	1.0	0.10	11.37	0.01	2.293	1.48	0.00	1.8	97.8	0.3	0.65	0.82	0.72	1.64	3.9	0.003	0.65	0.0	0.04	14.85	0.00	2.187	8.93	1.48	3.3	96.4	0.3	0.66	0.92	0.84	0.79	1.35	11934	1474	5	0	2	0	0	logfile

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