Table showing results for February 2024

The table shows a selection of parameters. Activate more columns using the drop-down menus below.
peach highlight: initial model; blue highlight: re-refined model

Resolution

• Resolution
• D₉₉
• D_FSC
• D_Model
• D_Model refined

Map vs model

• CC_box
• CC_mask
• EMRinger
• CC_box refined
• CC_mask refined
• EMRinger refined

Geometry

• Bond rmsd
• Angle rmsd
• Cβ devts
• Chirality
• Dihedral rmsd
• Plane rmsd
• Min nonbonded
• Clashscore
• Rota outliers
• Bond rmsd refined
• Angle rmsd refined
• Cβ devts refined
• Chirality refined
• Dihedral rmsd refined
• Plane rmsd refined
• Min nonbonded refined
• Clashscore refined
• Rota outliers refined
• RMSD

Ramachandran

• Rama allowed
• Rama favored
• Rama outliers
• Z-score
• Rama allowed refined
• Rama favored refined
• Rama outliers refined
• Z-score refined

Composition

• # atoms
• # residues
• # chains
• # nucleotides
• # other
• # water
• # H

Other

• Date processed
• Release Date

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Status	PDB code	EMDB code	Date processed	Release Date	Resolution	D99	DFSC	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	CCbox	CCmask	EMRinger	DModel	Bond rmsd	Angle rmsd	Cβ devts	Chirality	Dihedral rmsd	Plane rmsd	Min nonbonded	Clashscore	Rota outliers	Rama allowed	Rama favored	Rama outliers	Z-score	RMSD	CCbox	CCmask	EMRinger	# atoms	# residues	# chains	# nucleotides	# other	# water	# H	Logfile
✔	7NRV	12551	2024-02-13	2021-03-04	3.0	3.20	2.72	3.2	0.007	1.15	0.0	0.07	12.81	0.03	2.385	3.52	0.00	6.0	94.0	0.0	-3.05	0.48	0.83	3.35	3.2	0.007	0.77	0.0	0.05	16.01	0.00	2.229	8.55	1.34	5.7	94.3	0.0	-2.70	0.40	0.41	0.83	3.23	5870	770	10	0	0	0	0	logfile
✔	7LXM	23571	2024-02-18	2021-03-04	3.41	3.61	—	3.6	0.020	1.80	4.0	0.11	15.75	0.01	2.194	1.54	0.24	1.2	98.5	0.3	0.80	0.77	0.78	3.15	3.5	0.004	0.72	0.0	0.05	13.76	0.00	2.185	9.46	2.99	3.4	96.6	0.0	-0.36	1.63	0.80	0.81	2.65	20820	2373	60	0	159	0	0	logfile
✔	7E9C	31029	2024-02-19	2021-03-04	3.5	4.28	3.62	4.0	0.003	0.58	0.0	0.03	26.94	0.00	2.221	12.74	0.14	3.3	96.7	0.0	0.16	0.78	0.69	0.28	4.0	0.003	0.62	0.0	0.04	28.05	0.00	2.148	16.12	3.32	4.2	95.8	0.0	0.21	1.60	0.82	0.78	0.57	12338	898	11	260	0	0	0	logfile
✔	7LXN	23572	2024-02-18	2021-03-04	3.85	4.32	—	4.1	0.020	1.79	3.0	0.11	15.74	0.01	2.257	1.91	0.52	1.3	98.6	0.1	0.84	0.81	0.80	2.22	4.1	0.004	0.75	0.0	0.05	13.31	0.00	2.090	11.80	2.28	3.3	96.7	0.0	0.41	1.32	0.81	0.80	2.42	20820	2373	60	0	159	0	0	logfile
✔	7E9H	31032	2024-02-16	2021-03-04	4.0	2.62	—	1.9	0.003	0.48	0.0	0.04	11.36	0.00	2.202	8.04	0.06	2.9	97.1	0.0	-2.83	0.68	0.61	—	1.9	0.006	0.77	0.0	0.04	15.13	0.00	2.034	18.48	4.22	6.2	93.8	0.0	-1.09	2.02	0.71	0.68	—	16847	2309	8	0	0	0	0	logfile
✔	7NRX	12552	2024-02-13	2021-03-04	3.55	3.48	3.32	3.7	0.010	1.20	0.0	0.09	12.76	0.01	2.356	6.37	0.00	8.7	91.3	0.0	-3.60	0.47	0.83	4.85	3.6	0.008	0.78	0.0	0.05	17.23	0.00	2.205	12.91	3.43	9.3	90.7	0.0	-3.46	1.41	0.43	0.81	4.75	5870	770	10	0	0	0	0	logfile
✔	7E9G	31031	2024-02-18	2021-03-04	3.5	2.34	—	3.1	0.004	0.59	0.0	0.10	12.02	0.00	2.196	9.69	0.00	3.8	96.2	0.0	-3.17	0.70	0.67	1.96	1.9	0.003	0.63	0.0	0.04	14.66	0.00	2.129	13.79	4.36	5.5	94.5	0.0	-1.44	0.64	0.72	0.71	2.00	18816	2557	10	0	3	0	0	logfile
✔	7E9P	31035	2024-02-13	2021-03-04	3.69	4.11	—	4.0	0.005	0.78	0.0	0.05	16.13	0.00	2.218	11.34	0.00	7.5	92.5	0.0	-2.51	0.74	0.81	2.88	4.0	0.004	0.69	0.0	0.05	15.30	0.00	2.170	12.28	2.03	6.4	93.6	0.0	-1.78	1.18	0.74	0.82	2.17	4898	639	4	0	1	0	0	logfile
✔	7E9F	31030	2024-02-19	2021-03-04	4.0	4.14	3.17	4.0	0.004	0.74	0.0	0.04	28.02	0.01	2.264	5.87	0.36	3.0	97.0	0.0	-4.61	0.83	0.75	—	4.0	0.003	0.67	0.0	0.04	28.22	0.00	2.040	17.45	4.72	4.4	95.6	0.0	-0.32	1.31	0.85	0.79	—	13279	1057	12	249	2	0	0	logfile
✔	7E9Q	31036	2024-02-22	2021-03-04	3.65	4.00	—	3.9	0.007	0.93	4.0	0.06	17.92	0.01	2.209	14.87	0.27	6.4	93.6	0.0	-2.42	0.68	0.73	1.84	3.9	0.009	0.85	0.0	0.05	16.00	0.01	2.068	17.02	3.83	10.1	89.9	0.0	-2.33	0.51	0.69	0.74	1.64	33876	4338	12	0	27	0	0	logfile
✔	7E9o	31034	2024-02-22	2021-03-04	3.41	3.80	—	3.7	0.007	0.82	4.0	0.05	16.68	0.01	2.202	10.68	0.24	4.9	95.1	0.0	-1.55	0.70	0.78	2.10	3.7	0.007	0.75	0.0	0.05	15.17	0.00	1.972	10.95	2.64	7.1	92.9	0.0	-1.10	1.18	0.72	0.81	2.05	33876	4338	12	0	27	0	0	logfile
✔	7E9N	31033	2024-02-22	2021-03-04	3.69	4.53	—	3.8	0.009	0.92	0.0	0.06	14.95	0.01	2.217	12.55	0.05	8.1	91.9	0.0	-2.35	0.83	0.77	1.84	3.9	0.003	0.63	0.0	0.04	14.99	0.00	2.115	11.69	1.54	5.2	94.8	0.0	-0.88	1.27	0.85	0.81	1.30	33519	4313	12	0	27	0	0	logfile
✔	7LX5	23566	2024-02-13	2021-03-03	3.44	3.85	3.41	3.9	0.005	0.62	0.0	0.04	10.10	0.00	2.198	4.72	0.00	3.4	96.6	0.0	-0.46	0.71	0.81	3.26	3.9	0.003	0.67	0.0	0.04	15.33	0.00	2.207	9.88	5.93	2.7	97.3	0.0	0.09	1.12	0.70	0.81	2.90	3485	448	3	0	0	0	0	logfile
✔	7NRi	12546	2024-02-18	2021-03-03	3.03	3.49	3.11	3.3	0.007	0.63	2.0	0.05	14.47	0.00	1.984	3.89	0.32	6.2	93.7	0.1	-3.46	0.78	0.84	3.97	3.3	0.003	0.52	0.0	0.04	15.51	0.00	2.028	4.02	1.03	4.1	95.9	0.0	-0.37	0.70	0.75	0.87	3.72	23143	1505	6	0	0	0	11351	logfile
✔	7LXD	23570	2024-02-17	2021-03-03	4.11	4.31	—	4.1	0.006	1.30	1.0	0.07	15.45	0.01	2.276	9.39	0.00	2.7	97.3	0.0	-3.73	0.79	0.63	—	4.1	0.003	0.77	0.0	0.05	14.52	0.01	2.053	21.76	0.05	11.1	88.9	0.0	-2.50	1.70	0.80	0.65	—	17456	2135	6	0	1	0	0	logfile
✔	7LX3	23565	2024-02-17	2021-03-03	3.45	3.77	—	3.6	0.021	1.74	6.0	0.11	12.95	0.01	2.198	1.38	0.10	0.9	99.1	0.0	1.02	0.81	0.85	3.06	3.6	0.004	0.67	0.0	0.04	12.50	0.00	2.173	7.14	2.19	3.0	97.0	0.0	0.42	1.62	0.79	0.83	2.75	20196	2322	54	0	144	0	0	logfile
✔	7E94	31028	2024-02-24	2021-03-03	4.67	5.59	—	4.2	0.008	1.47	7.0	0.08	14.82	0.01	1.403	10.80	1.04	12.4	86.6	1.0	-5.01	0.78	0.52	—	4.1	0.005	0.89	0.0	0.05	13.63	0.01	1.980	28.76	0.05	14.0	85.8	0.2	-2.81	1.49	0.88	0.62	—	46305	6583	22	0	0	0	0	logfile
✔	7E8S	31021	2024-02-24	2021-03-02	4.36	4.87	—	4.2	0.007	1.44	6.0	0.08	14.38	0.01	1.149	8.12	0.55	9.7	89.4	0.8	-4.63	0.75	0.47	—	4.0	0.005	0.90	0.0	0.05	13.37	0.00	2.016	27.25	0.00	12.8	87.0	0.2	-2.64	1.26	0.87	0.72	—	46554	6572	22	0	0	0	0	logfile
✔	7LWY	23560	2024-02-23	2021-03-02	4.0	3.83	—	3.7	0.007	0.87	0.0	0.06	13.34	0.00	2.150	13.02	0.18	8.9	91.1	0.0	-2.13	0.61	0.79	—	3.8	0.004	0.64	1.0	0.04	14.86	0.00	2.015	9.23	1.43	8.4	91.5	0.1	-1.07	0.57	0.60	0.84	—	103460	6645	10	0	0	0	51395	logfile
✔	7LWi	23546	2024-02-19	2021-03-01	3.07	3.28	—	3.2	0.013	1.78	1.0	0.10	13.05	0.01	2.478	0.08	1.07	5.3	94.4	0.2	-1.20	0.73	0.79	3.51	3.2	0.004	0.64	0.0	0.04	14.56	0.00	2.133	6.77	1.83	4.0	96.0	0.0	0.07	0.67	0.73	0.81	2.56	23847	3003	6	0	30	0	0	logfile

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